Rroxscaffold_7G00195310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0014473
Physical Location & Seq
Reverse (-)
37549487 .. 37554854
5368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195310.1

Sequence Viewer

Length: 726 bp
ATGAGCCTAGCACTCGTCCAGGGCTATTCTTCCTCTGAAGAAGAAGAAGAAGAAGAAGCAGAAGAAGGCCAAAATGGCCTCCATTACCATAACTCATCGGACGACGACGGCGACGGCGACGGCGTTGAGAACAAATTAGCATCCTCCTCCGTTTACGAGTCGTCCCGACCCACCGCCTCCAATACCTCCGCCCTCCCTTCTGCTTCCGACGCCTTCTCCGAGATTTCGGGACCCCCTGCTTTTCTGAACAACTGCGTCCAAGAATACTCCCCCAGCAAGCTTATCAAGTTGTCAGTGAAATCGACTCCGTTTACCAATTCGGCACATTTTGGGGTGGATCCATGTGCAGTAGTGGAGTCCAAAGCTCATTTAGTTGGTATCCATGAACGAGTAAGAAGTGATCTTGATGGCAAGCAACCTCCAACAGTAGCTGATGCAAGCACAAATCAAGGAGGCAAGCGTGTGGCAACTGTAACAAATCCCAGTGCAGAGGATGCTGCAGCGCTTCTGAGGATGTGTTTGCAATGTGGAATACCCAAGACCTTCTCCAATGCACAGGGAATGGTCTGCCCAGCATGTGGTGATCGGCCTGTAGACGCAACCGACGACTCCAAGAAAAAGGGGTCTACAATCAAAGATAAGGAGAAGAATAAGAGGATGAAAGGCCAGTCATCTCATGCTACATGGAAAAGTGAATGTGATGTTTGTCTAGATGGTTCCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

25.49

Weight (kDa)

4.94

Isoelectric Point (pI)

56.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64160
fragaria_vesca FvH4_2g12710
malus_domestica MD10G1051500.v1.1
prunus_persica Prupe.8G062400_v2.0.a1
pyrus_communis pycom10g03630
rosa_chinensis RchiOBHm_Chr6g0273461
rosa_laevigata RLG00000013615
rosa_multiflora Rmu_co8520659.1_g000001 Rmu_sc0005891.1_g000032 Rmu_sc0010380.1_g000009
rosa_roxburghii Rroxscaffold_7G00195310
rosa_rugosa Rorug06G0075500
rosa_samantha Rh6AG190200 Rh6BG193700 Rh6CG193200 Rh6DG184800
rosa_wichuraiana Rw6G016640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 578
AccI GTMKAC 2 cut(s) 594, 626
AciI CCGC 2 cut(s) 174, 189
AclWI GGATC 2 cut(s) 332, 345
AcuI CTGAAG 1 cut(s) 57
AcyI GRCGYC 1 cut(s) 210
AfeI AGCGCT 1 cut(s) 504
AfiI CCNNNNNNNGG 1 cut(s) 578
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 3 cut(s) 280, 365, 431
AluI AGCT 3 cut(s) 280, 365, 431
AlwI GGATC 2 cut(s) 332, 345
AlwNI CAGNNNCTG 1 cut(s) 431
Aor51HI AGCGCT 1 cut(s) 504
AoxI GGCC 4 cut(s) 67, 76, 587, 664
ApeKI GCWGC 2 cut(s) 497, 500
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 593
AvaII GGWCC 1 cut(s) 230
BamHI GGATCC 1 cut(s) 337
BbvI GCAGC 2 cut(s) 484, 512
BccI CCATC 2 cut(s) 401, 707
BceAI ACGGC 3 cut(s) 124, 130, 136
BciT130I CCWGG 1 cut(s) 20
BciVI GTATCC 1 cut(s) 389
BfaI CTAG 2 cut(s) 8, 710
BfmI CTRYAG 2 cut(s) 498, 591
BfoI RGCGCY 1 cut(s) 506
BfuI GTATCC 1 cut(s) 389
BglI GCCNNNNNGGC 1 cut(s) 75
BisI GCNGC 2 cut(s) 498, 501
BlsI GCNGC 2 cut(s) 499, 502
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 4 cut(s) 231, 232, 339, 718
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 477
BmsI GCATC 3 cut(s) 149, 424, 484
BmuI ACTGGG 1 cut(s) 477
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 578
Bse1I ACTGG 2 cut(s) 483, 667
Bse3DI GCAATG 1 cut(s) 530
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 4 cut(s) 140, 499, 519, 663
BseLI CCNNNNNNNGG 1 cut(s) 578
BseMI GCAATG 1 cut(s) 530
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 2 cut(s) 483, 667
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 484, 512
BseYI CCCAGC 2 cut(s) 272, 571
BsgI GTGCAG 2 cut(s) 366, 507
BshFI GGCC 4 cut(s) 69, 78, 589, 666
BslFI GGGAC 2 cut(s) 148, 243
BslI CCNNNNNNNGG 1 cut(s) 578
BsmFI GGGAC 2 cut(s) 148, 243
BsnI GGCC 4 cut(s) 69, 78, 589, 666
Bsp143I GATC 3 cut(s) 337, 400, 583
BspACI CCGC 2 cut(s) 174, 189
BspANI GGCC 4 cut(s) 69, 78, 589, 666
BspCNI CTCAG 1 cut(s) 501
BspLI GGNNCC 4 cut(s) 231, 232, 339, 718
BspMAI CTGCAG 1 cut(s) 502
BspPI GGATC 2 cut(s) 332, 345
BsrDI GCAATG 1 cut(s) 530
BsrI ACTGG 2 cut(s) 483, 667
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 3 cut(s) 337, 400, 583
BssNI GRCGYC 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 427, 472
BstACI GRCGYC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 494
BstC8I GCNNGC 4 cut(s) 278, 413, 439, 458
BstDEI CTNAG 1 cut(s) 509
BstF5I GGATG 4 cut(s) 140, 499, 519, 663
BstH2I RGCGCY 1 cut(s) 506
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 3 cut(s) 340, 403, 586
BstMBI GATC 3 cut(s) 337, 400, 583
BstMWI GCNNNNNNNGC 3 cut(s) 75, 209, 494
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 579
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 2 cut(s) 498, 591
BstV1I GCAGC 2 cut(s) 484, 512
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuI GTATCC 1 cut(s) 389
BsuRI GGCC 4 cut(s) 69, 78, 589, 666
BtsCI GGATG 4 cut(s) 140, 499, 519, 663
BtsIMutI CAGTG 2 cut(s) 300, 490
Cac8I GCNNGC 4 cut(s) 278, 413, 439, 458
CaiI CAGNNNCTG 1 cut(s) 431
CfoI GCGC 1 cut(s) 505
Cfr13I GGNCC 1 cut(s) 230
CseI GACGC 3 cut(s) 218, 244, 605
CviAII CATG 5 cut(s) 342, 383, 576, 677, 684
CviJI RGCY 9 cut(s) 6, 24, 69, 78, 280, 365, 431, 589, 666
CviKI_1 RGCY 9 cut(s) 6, 24, 69, 78, 280, 365, 431, 589, 666
DdeI CTNAG 1 cut(s) 509
DpnI GATC 3 cut(s) 339, 402, 585
DpnII GATC 3 cut(s) 337, 400, 583
EciI GGCGGA 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 230
Eco47III AGCGCT 1 cut(s) 504
Eco57I CTGAAG 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 18
FaeI CATG 5 cut(s) 345, 386, 579, 680, 687
FaiI YATR 7 cut(s) 90, 343, 384, 577, 678, 685, 724
FaqI GGGAC 2 cut(s) 148, 243
FatI CATG 5 cut(s) 341, 382, 575, 676, 683
FblI GTMKAC 2 cut(s) 594, 626
Fnu4HI GCNGC 2 cut(s) 498, 501
FokI GGATG 4 cut(s) 127, 506, 526, 670
Fsp4HI GCNGC 2 cut(s) 498, 501
FspBI CTAG 2 cut(s) 8, 710
GlaI GCGC 1 cut(s) 504
GluI GCNGC 2 cut(s) 498, 501
GsaI CCCAGC 2 cut(s) 276, 575
HaeII RGCGCY 1 cut(s) 506
HaeIII GGCC 4 cut(s) 69, 78, 589, 666
HgaI GACGC 3 cut(s) 218, 244, 605
HhaI GCGC 1 cut(s) 505
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 5 cut(s) 345, 386, 579, 680, 687
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 4 cut(s) 158, 304, 356, 608
HphI GGTGA 1 cut(s) 593
Hpy166II GTNNAC 4 cut(s) 154, 312, 595, 627
Hpy188I TCNGA 6 cut(s) 37, 100, 208, 220, 246, 510
Hpy188III TCNNGA 4 cut(s) 165, 228, 404, 710
Hpy8I GTNNAC 4 cut(s) 154, 312, 595, 627
Hpy99I CGWCG 6 cut(s) 107, 110, 116, 122, 212, 608
HpyAV CCTTC 4 cut(s) 59, 207, 223, 553
HpyCH4III ACNGT 2 cut(s) 427, 472
HpyCH4V TGCA 6 cut(s) 347, 437, 488, 500, 523, 554
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 209, 494
HpyF3I CTNAG 1 cut(s) 509
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 5 cut(s) 345, 386, 579, 680, 687
HspAI GCGC 1 cut(s) 503
KflI GGGWCCC 1 cut(s) 230
Kzo9I GATC 3 cut(s) 337, 400, 583
LpnPI CCDG 9 cut(s) 5, 32, 249, 286, 496, 542, 585, 603, 680
Lsp1109I GCAGC 2 cut(s) 484, 512
LweI GCATC 3 cut(s) 149, 424, 484
MaeI CTAG 2 cut(s) 8, 710
MaeIII GTNAC 1 cut(s) 472
MalI GATC 3 cut(s) 339, 402, 585
MboI GATC 3 cut(s) 337, 400, 583
MboII GAAGA 9 cut(s) 21, 50, 53, 56, 59, 62, 65, 74, 658
MflI RGATCY 1 cut(s) 337
MluCI AATT 2 cut(s) 134, 316
MlyI GAGTC 4 cut(s) 167, 298, 365, 602
MmeI TCCRAC 2 cut(s) 231, 446
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 3 cut(s) 75, 209, 494
NdeII GATC 3 cut(s) 337, 400, 583
NlaIII CATG 5 cut(s) 345, 386, 579, 680, 687
NlaIV GGNNCC 4 cut(s) 231, 232, 339, 718
NspI RCATGY 1 cut(s) 579
PcsI WCGNNNNNNNCGW 5 cut(s) 108, 114, 120, 216, 603
PflMI CCANNNNNTGG 1 cut(s) 578
PkrI GCNGC 2 cut(s) 499, 502
PleI GAGTC 4 cut(s) 166, 298, 364, 602
PpsI GAGTC 4 cut(s) 166, 298, 364, 602
PpuMI RGGWCCY 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 18
PspFI CCCAGC 2 cut(s) 272, 571
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 4 cut(s) 231, 232, 339, 718
PspPI GGNCC 1 cut(s) 230
PspPPI RGGWCCY 1 cut(s) 230
PstI CTGCAG 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 431
PsuI RGATCY 1 cut(s) 337
SatI GCNGC 2 cut(s) 498, 501
Sau3AI GATC 3 cut(s) 337, 400, 583
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 4 cut(s) 167, 298, 365, 602
ScrFI CCNGG 1 cut(s) 20
SetI ASST 6 cut(s) 188, 282, 367, 421, 433, 545
SfaNI GCATC 3 cut(s) 149, 424, 484
SfcI CTRYAG 2 cut(s) 498, 591
SfiI GGCCNNNNNGGCC 1 cut(s) 75
SinI GGWCC 1 cut(s) 230
Sse9I AATT 2 cut(s) 134, 316
SsiI CCGC 2 cut(s) 174, 189
SspMI CTAG 2 cut(s) 8, 710
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 427, 472
TaqI TCGA 1 cut(s) 302
TasI AATT 2 cut(s) 134, 316
TscAI CASTG 2 cut(s) 300, 490
TseI GCWGC 2 cut(s) 497, 500
TspDTI ATGAA 2 cut(s) 399, 674
TspGWI ACGGA 3 cut(s) 139, 297, 709
TspRI CASTG 2 cut(s) 300, 490
Van91I CCANNNNNTGG 1 cut(s) 578
VpaK11BI GGWCC 1 cut(s) 230
XbaI TCTAGA 1 cut(s) 709
XceI RCATGY 1 cut(s) 579
XmiI GTMKAC 2 cut(s) 594, 626
XspI CTAG 2 cut(s) 8, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.