Rh6CG193200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0014473
Physical Location & Seq
Forward (+)
31910723 .. 31914428
3706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG193200.1

Sequence Viewer

Length: 714 bp
ATGAGCTTAGCACTCGTCCAGGGCTATTCTTCCTCTGAAGAAGAAGAAGAAGCAGCAGAAGAAGGCCAAAATGGCCTCCATTACCATAACTCATCGGGCGACGACGGCGACGGCGTTGAGCATAAATTAGCATCCTCCTCCGTTTACGAGTCGTCCCGACCCACCGCCTCCAATGCCTCCGCCCTCCCGTCTGCTTCCGACGCCTTCTCCGAGATTTCGGGACCCCCTGCTTTTCTGAACAACTGCGTCCAAGAATACTCCCCCCAGCAAGTGAGGCATGATGCTCGTCACAACAAACATCGCAAGGAAAAGAAAGACTTACCGGCTGGTGCAGTAGTGGTGTCCAAAGCTCATTTAGTTGGTATCCATGAACGAGTAAGAAGTGATCTTGATGGTAAGCAACCTCCAACAGTAGCTGATGCAAGCACAAATCAAGGAGGCAAGCGTGTGGCAACTGTAACAAATCCCAGTGCAGAGGATGCTGCAGCACTTCTGAGGATGTGTTTGCAATGTGGAATACCCAAGACCTTCTCCAATGCACGGGGAATGGTCTGCCCAGCATGTGGTGATCGGCCTGTAGAGGCAACCGACGACTCCAAGAAGAAGGGGTCTACAATCAAAGATAAGGAGAAGAATAAGAGGATGAAAGGCCAGTCATCTCATGCTACATGGAAAAGTGAAACTGAAATGCAGCTTCGACAGCAATTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

25.53

Weight (kDa)

6.31

Isoelectric Point (pI)

61.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64160
fragaria_vesca FvH4_2g12710
malus_domestica MD10G1051500.v1.1
prunus_persica Prupe.8G062400_v2.0.a1
pyrus_communis pycom10g03630
rosa_chinensis RchiOBHm_Chr6g0273461
rosa_laevigata RLG00000013615
rosa_multiflora Rmu_co8520659.1_g000001 Rmu_sc0005891.1_g000032 Rmu_sc0010380.1_g000009
rosa_roxburghii Rroxscaffold_7G00195310
rosa_rugosa Rorug06G0075500
rosa_samantha Rh6AG190200 Rh6BG193700 Rh6CG193200 Rh6DG184800
rosa_wichuraiana Rw6G016640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 563
AccI GTMKAC 1 cut(s) 611
AciI CCGC 2 cut(s) 165, 180
AcuI CTGAAG 1 cut(s) 57
AcyI GRCGYC 1 cut(s) 201
AfiI CCNNNNNNNGG 2 cut(s) 540, 563
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 4 cut(s) 6, 350, 416, 694
AluI AGCT 4 cut(s) 6, 350, 416, 694
AlwNI CAGNNNCTG 1 cut(s) 416
AoxI GGCC 4 cut(s) 64, 73, 572, 649
ApeKI GCWGC 4 cut(s) 53, 482, 485, 691
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 578
AvaII GGWCC 1 cut(s) 221
BbvI GCAGC 4 cut(s) 65, 469, 497, 703
BccI CCATC 1 cut(s) 386
BceAI ACGGC 2 cut(s) 121, 127
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BciT130I CCWGG 1 cut(s) 20
BciVI GTATCC 1 cut(s) 374
BfaI CTAG 1 cut(s) 712
BfmI CTRYAG 2 cut(s) 483, 576
BfuI GTATCC 1 cut(s) 374
BglI GCCNNNNNGGC 1 cut(s) 72
BisI GCNGC 4 cut(s) 54, 483, 486, 692
BlpI GCTNAGC 1 cut(s) 7
BlsI GCNGC 4 cut(s) 55, 484, 487, 693
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 2 cut(s) 222, 223
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 462
BmsI GCATC 4 cut(s) 140, 271, 409, 469
BmuI ACTGGG 1 cut(s) 462
Bpu1102I GCTNAGC 1 cut(s) 7
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 540, 563
Bse118I RCCGGY 1 cut(s) 322
Bse1I ACTGG 2 cut(s) 468, 652
Bse3DI GCAATG 1 cut(s) 515
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 4 cut(s) 131, 484, 504, 648
BseLI CCNNNNNNNGG 2 cut(s) 540, 563
BseMI GCAATG 1 cut(s) 515
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 2 cut(s) 468, 652
BseRI GAGGAG 1 cut(s) 127
BseXI GCAGC 4 cut(s) 65, 469, 497, 703
BseYI CCCAGC 2 cut(s) 264, 556
BsgI GTGCAG 2 cut(s) 351, 492
BshFI GGCC 4 cut(s) 66, 75, 574, 651
BsiSI CCGG 1 cut(s) 323
BslFI GGGAC 2 cut(s) 139, 234
BslI CCNNNNNNNGG 2 cut(s) 540, 563
BsmFI GGGAC 2 cut(s) 139, 234
BsnI GGCC 4 cut(s) 66, 75, 574, 651
Bsp143I GATC 2 cut(s) 385, 568
Bsp1720I GCTNAGC 1 cut(s) 7
BspACI CCGC 2 cut(s) 165, 180
BspANI GGCC 4 cut(s) 66, 75, 574, 651
BspCNI CTCAG 1 cut(s) 486
BspLI GGNNCC 2 cut(s) 222, 223
BspMAI CTGCAG 1 cut(s) 487
BsrDI GCAATG 1 cut(s) 515
BsrFI RCCGGY 1 cut(s) 322
BsrI ACTGG 2 cut(s) 468, 652
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 2 cut(s) 385, 568
BssNI GRCGYC 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 412, 457
BstACI GRCGYC 1 cut(s) 201
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 424, 443
BstDEI CTNAG 2 cut(s) 7, 494
BstF5I GGATG 4 cut(s) 131, 484, 504, 648
BstKTI GATC 2 cut(s) 388, 571
BstMBI GATC 2 cut(s) 385, 568
BstMWI GCNNNNNNNGC 7 cut(s) 72, 105, 173, 200, 274, 479, 700
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 564
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 2 cut(s) 483, 576
BstV1I GCAGC 4 cut(s) 65, 469, 497, 703
BsuI GTATCC 1 cut(s) 374
BsuRI GGCC 4 cut(s) 66, 75, 574, 651
BtgZI GCGATG 1 cut(s) 284
BtsCI GGATG 4 cut(s) 131, 484, 504, 648
BtsIMutI CAGTG 1 cut(s) 475
Cac8I GCNNGC 2 cut(s) 424, 443
CaiI CAGNNNCTG 1 cut(s) 416
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 221
CseI GACGC 2 cut(s) 209, 235
CviAII CATG 5 cut(s) 278, 368, 561, 662, 669
DdeI CTNAG 2 cut(s) 7, 494
DpnI GATC 2 cut(s) 387, 570
DpnII GATC 2 cut(s) 385, 568
EciI GGCGGA 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 18
FaeI CATG 5 cut(s) 281, 371, 564, 665, 672
FaiI YATR 7 cut(s) 87, 123, 279, 369, 562, 663, 670
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FaqI GGGAC 2 cut(s) 139, 234
FatI CATG 5 cut(s) 277, 367, 560, 661, 668
FblI GTMKAC 1 cut(s) 611
Fnu4HI GCNGC 4 cut(s) 54, 483, 486, 692
FokI GGATG 4 cut(s) 118, 491, 511, 655
Fsp4HI GCNGC 4 cut(s) 54, 483, 486, 692
FspBI CTAG 1 cut(s) 712
GluI GCNGC 4 cut(s) 54, 483, 486, 692
GsaI CCCAGC 2 cut(s) 268, 560
HaeIII GGCC 4 cut(s) 66, 75, 574, 651
HapII CCGG 1 cut(s) 323
HgaI GACGC 2 cut(s) 209, 235
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 5 cut(s) 281, 371, 564, 665, 672
HinfI GANTC 2 cut(s) 149, 593
HpaII CCGG 1 cut(s) 323
HphI GGTGA 1 cut(s) 578
Hpy166II GTNNAC 2 cut(s) 145, 612
Hpy188I TCNGA 5 cut(s) 37, 199, 211, 237, 495
Hpy188III TCNNGA 3 cut(s) 156, 219, 389
Hpy8I GTNNAC 2 cut(s) 145, 612
Hpy99I CGWCG 5 cut(s) 104, 107, 113, 203, 593
HpyAV CCTTC 4 cut(s) 56, 214, 538, 598
HpyCH4III ACNGT 2 cut(s) 412, 457
HpyCH4V TGCA 7 cut(s) 332, 422, 473, 485, 508, 539, 691
HpyF10VI GCNNNNNNNGC 7 cut(s) 72, 105, 173, 200, 274, 479, 700
HpyF3I CTNAG 2 cut(s) 7, 494
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 5 cut(s) 281, 371, 564, 665, 672
KflI GGGWCCC 1 cut(s) 221
Kzo9I GATC 2 cut(s) 385, 568
Lsp1109I GCAGC 4 cut(s) 65, 469, 497, 703
LweI GCATC 4 cut(s) 140, 271, 409, 469
MaeI CTAG 1 cut(s) 712
MaeIII GTNAC 2 cut(s) 287, 457
MalI GATC 2 cut(s) 387, 570
MboI GATC 2 cut(s) 385, 568
MboII GAAGA 8 cut(s) 21, 50, 53, 56, 59, 71, 613, 643
MluCI AATT 2 cut(s) 125, 704
MlyI GAGTC 2 cut(s) 158, 587
MmeI TCCRAC 2 cut(s) 222, 431
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 7 cut(s) 72, 105, 173, 200, 274, 479, 700
NdeII GATC 2 cut(s) 385, 568
NlaIII CATG 5 cut(s) 281, 371, 564, 665, 672
NlaIV GGNNCC 2 cut(s) 222, 223
NmuCI GTSAC 1 cut(s) 287
NspI RCATGY 1 cut(s) 564
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 207
PflMI CCANNNNNTGG 1 cut(s) 563
PkrI GCNGC 4 cut(s) 55, 484, 487, 693
PleI GAGTC 2 cut(s) 157, 587
PpsI GAGTC 2 cut(s) 157, 587
PpuMI RGGWCCY 1 cut(s) 221
Psp5II RGGWCCY 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 18
PspFI CCCAGC 2 cut(s) 264, 556
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 222, 223
PspPI GGNCC 1 cut(s) 221
PspPPI RGGWCCY 1 cut(s) 221
PstI CTGCAG 1 cut(s) 487
PstNI CAGNNNCTG 1 cut(s) 416
SatI GCNGC 4 cut(s) 54, 483, 486, 692
Sau3AI GATC 2 cut(s) 385, 568
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 2 cut(s) 158, 587
ScrFI CCNGG 1 cut(s) 20
SetI ASST 6 cut(s) 8, 352, 406, 418, 530, 696
SfaNI GCATC 4 cut(s) 140, 271, 409, 469
SfcI CTRYAG 2 cut(s) 483, 576
SfiI GGCCNNNNNGGCC 1 cut(s) 72
SinI GGWCC 1 cut(s) 221
Sse9I AATT 2 cut(s) 125, 704
SsiI CCGC 2 cut(s) 165, 180
SspMI CTAG 1 cut(s) 712
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 412, 457
TaqI TCGA 1 cut(s) 697
TasI AATT 2 cut(s) 125, 704
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 4 cut(s) 53, 482, 485, 691
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 384, 659
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 1 cut(s) 475
Van91I CCANNNNNTGG 1 cut(s) 563
VpaK11BI GGWCC 1 cut(s) 221
XceI RCATGY 1 cut(s) 564
XmiI GTMKAC 1 cut(s) 611
XspI CTAG 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.