Rorug06G0075500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014473
Physical Location & Seq
Reverse (-)
10015273 .. 10017157
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0075500.1

Sequence Viewer

Length: 1452 bp
ATGGAAACCAAAACTCATCAACAGCTTCACATTTTCTTCCTTCCATATATGGTTCAAGGCCACACTTTACCCCTCCTAGACATAGCCAAACTATTTGCTTCACGTGGTGTTAAATCCACCATAATAACCACCCCTGTCAATGCACCACTCTTCTCCAAATCAATCGAAACCAGCAAAAGTTTGGGTTTAGAAATCGAACTTCTCGTCATCAAGTTCCCATCTACTGAAGTTGGGTTGCCTGACGGAATTGAAAGAACGAAGTTGGTGAAAACCCAAGAGACGAAGGAAAAGTTCTATAAAGCTATAACTGCGCTTGAAAAACAGGTAGAGCAGCTTTTAGACCAACATCGTCCCCACTGTCTCGTTGCAAGCACATTATTTCATTGGGCTACGGATGTTGCTGCCAAGTTTGGAATTCCGAGGCTCATCTTTCATGGACCTGGTTTCTTCCCCTTGTGTGCTGCAATGAGTATGACGCTGTACCAACCTCACATGAAGGTTTCATCTGATTCAGAATTTTTTGTTATTCCTAATCTCCCGCATGAGATCAAGACGACAAGAAACGAACTACCAACTTTTCTTACTCAAAATGGTGAGACAGGACTCAACAAGATGCTCGAAGTATGTAGAAAGGCTGAAGAAAGGAGCTTCGGGATTATTATTAATAGCTTCTATGAACTTGAACCAGATTATGCAGATCACTATAGGAAGGTATTTAGGAGGAAGTCATGGCATATCGGCCCGGTTTCTTTATGCAACAAGGCAGAAAAGGATATATCAGGAAGGGGAACGGAAGGCTCGGTTGATGAAGTTCATGAGTGCTTGAACTGGCTTAATTCTAAGAAAGCGAATTCGGTTGTTTATATATGCTTTGGAAGCCTTAGCAGTTTCAGTGATGTTCAGCTCTTAGAAATTGCTATAGGTCTTGAGGCTTCTGGAAAACAGTTCATTTGGGTTGTTAAGAAAGAAAAGAATGATGAAGAAGAGTGGTTGCCTGAAGGGTTTGAGCAGAGAATGGAGGGAAAGGGACTTATTATAAGAGGTTGGGCTCCCCAACTACTGATTCTTCAACATGAAGCAGTTGGGGCCTTTCTCACTCATTGTGGGTGGAACTCGATCCTTGAAGGAGTGTCAGCCGGGGTGCCAATGATCACCTGGCCGGTGTTCGCTGACCAGTTTAACAATGAGAAGTTGGTGACTCAGATACTTAGGATTGGAGTTGCTATTGGTGCTCAAAAGTCGGAGGATGGTAGTGTGAAGACCGAAGCCAGTGTGAAGAGTGAAGGTATTAAGAAGGCTGTAACTGAAATAATGGAGGGTGATGAAGCTGACGGAATGAGAAGCAAAGCTTTTGTTCTTGGAGAGACGGCAAAGAGGGCAGTTGAGGAAGGTGGTTCGTCGTTTTCCGATTTAACTGCTCTAATTGAAGAGTTGAGGTCCCTTGGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

483

Amino Acids

53.85

Weight (kDa)

5.93

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 269 - 401 5.7e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64160
fragaria_vesca FvH4_2g12710
malus_domestica MD10G1051500.v1.1
prunus_persica Prupe.8G062400_v2.0.a1
pyrus_communis pycom10g03630
rosa_chinensis RchiOBHm_Chr6g0273461
rosa_laevigata RLG00000013615
rosa_multiflora Rmu_co8520659.1_g000001 Rmu_sc0005891.1_g000032 Rmu_sc0010380.1_g000009
rosa_roxburghii Rroxscaffold_7G00195310
rosa_rugosa Rorug06G0075500
rosa_samantha Rh6AG190200 Rh6BG193700 Rh6CG193200 Rh6DG184800
rosa_wichuraiana Rw6G016640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1037
AccB1I GGYRCC 1 cut(s) 1141
AciI CCGC 1 cut(s) 539
AclWI GGATC 1 cut(s) 1111
AcoI YGGCCR 1 cut(s) 1157
AcsI RAATTY 3 cut(s) 414, 515, 850
AcuI CTGAAG 3 cut(s) 246, 657, 1017
AcvI CACGTG 1 cut(s) 104
AdeI CACNNNGTG 1 cut(s) 107
AfaI GTAC 1 cut(s) 482
AgsI TTSAA 8 cut(s) 56, 251, 317, 683, 826, 1070, 1124, 1427
AjnI CCWGG 2 cut(s) 439, 1154
AjuI GAANNNNNNNTTGG 2 cut(s) 1047, 1079
AluBI AGCT 8 cut(s) 25, 302, 334, 648, 669, 904, 1328, 1349
AluI AGCT 8 cut(s) 25, 302, 334, 648, 669, 904, 1328, 1349
Alw21I GWGCWC 1 cut(s) 1234
Alw26I GTCTC 4 cut(s) 272, 365, 590, 1358
AlwI GGATC 1 cut(s) 1111
AoxI GGCC 4 cut(s) 58, 739, 1086, 1157
ApeKI GCWGC 3 cut(s) 331, 401, 461
ApoI RAATTY 3 cut(s) 414, 515, 850
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
AseI ATTAAT 1 cut(s) 663
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 4 cut(s) 437, 740, 1086, 1437
AsuC2I CCSGG 2 cut(s) 743, 1138
AsuHPI GGTGA 5 cut(s) 277, 605, 1144, 1207, 1331
AvaII GGWCC 2 cut(s) 437, 1437
BanI GGYRCC 1 cut(s) 1141
BanII GRGCYC 1 cut(s) 1051
BbrPI CACGTG 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 1265
Bbv12I GWGCWC 1 cut(s) 1234
BbvI GCAGC 3 cut(s) 343, 388, 448
BccI CCATC 2 cut(s) 226, 1241
BceAI ACGGC 1 cut(s) 1383
BcgI CGANNNNNNTGC 2 cut(s) 1397, 1431
BciT130I CCWGG 2 cut(s) 441, 1156
BclI TGATCA 1 cut(s) 1149
BcnI CCSGG 2 cut(s) 743, 1138
BcoDI GTCTC 4 cut(s) 272, 365, 590, 1358
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 2 cut(s) 703, 918
BisI GCNGC 3 cut(s) 332, 402, 462
BlsI GCNGC 3 cut(s) 333, 403, 463
Bme1390I CCNGG 4 cut(s) 441, 743, 1138, 1156
Bme18I GGWCC 2 cut(s) 437, 1437
BmgT120I GGNCC 4 cut(s) 437, 740, 1086, 1437
BmiI GGNNCC 4 cut(s) 1050, 1087, 1143, 1439
BmrFI CCNGG 4 cut(s) 441, 743, 1138, 1156
BmsI GCATC 1 cut(s) 603
BpiI GAAGAC 1 cut(s) 1265
Bpu10I CCTNAGC 1 cut(s) 881
BpuEI CTTGAG 1 cut(s) 947
BpuMI CCSGG 2 cut(s) 743, 1138
BsaAI YACGTR 1 cut(s) 104
BsaJI CCNNGG 3 cut(s) 419, 1137, 1441
Bse118I RCCGGY 1 cut(s) 1159
Bse1I ACTGG 3 cut(s) 833, 1174, 1269
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 2 cut(s) 441, 1156
BseDI CCNNGG 3 cut(s) 419, 1137, 1441
BseGI GGATG 2 cut(s) 400, 1252
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 1 cut(s) 1214
BseNI ACTGG 3 cut(s) 833, 1174, 1269
BseXI GCAGC 3 cut(s) 343, 388, 448
BshFI GGCC 4 cut(s) 60, 741, 1088, 1159
BshNI GGYRCC 1 cut(s) 1141
BsiHKAI GWGCWC 1 cut(s) 1234
BsiSI CCGG 3 cut(s) 743, 1137, 1160
BslFI GGGAC 3 cut(s) 336, 1041, 1423
BsmAI GTCTC 4 cut(s) 272, 365, 590, 1358
BsmBI CGTCTC 2 cut(s) 272, 1358
BsmFI GGGAC 3 cut(s) 336, 1041, 1423
BsnI GGCC 4 cut(s) 60, 741, 1088, 1159
Bsp1286I GDGCHC 2 cut(s) 1051, 1234
Bsp143I GATC 4 cut(s) 546, 697, 1116, 1149
BspACI CCGC 1 cut(s) 539
BspANI GGCC 4 cut(s) 60, 741, 1088, 1159
BspCNI CTCAG 1 cut(s) 1213
BspHI TCATGA 1 cut(s) 814
BspLI GGNNCC 4 cut(s) 1050, 1087, 1143, 1439
BspPI GGATC 1 cut(s) 1111
BspT107I GGYRCC 1 cut(s) 1141
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 1159
BsrI ACTGG 3 cut(s) 833, 1174, 1269
BssAI RCCGGY 1 cut(s) 1159
BssECI CCNNGG 3 cut(s) 419, 1137, 1441
BssMI GATC 4 cut(s) 546, 697, 1116, 1149
BssT1I CCWWGG 1 cut(s) 1441
Bst2UI CCWGG 2 cut(s) 441, 1156
Bst4CI ACNGT 2 cut(s) 359, 945
Bst6I CTCTTC 4 cut(s) 155, 978, 1271, 1422
BstBAI YACGTR 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 5 cut(s) 840, 881, 907, 1200, 1208
BstF5I GGATG 2 cut(s) 400, 1252
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 4 cut(s) 549, 700, 1119, 1152
BstMAI GTCTC 4 cut(s) 272, 365, 590, 1358
BstMBI GATC 4 cut(s) 546, 697, 1116, 1149
BstMWI GCNNNNNNNGC 5 cut(s) 308, 876, 1085, 1229, 1376
BstNI CCWGG 2 cut(s) 441, 1156
BstSCI CCNGG 4 cut(s) 439, 741, 1136, 1154
BstSFI CTRYAG 2 cut(s) 703, 918
BstV1I GCAGC 3 cut(s) 343, 388, 448
BstV2I GAAGAC 1 cut(s) 1265
BsuRI GGCC 4 cut(s) 60, 741, 1088, 1159
BtsCI GGATG 2 cut(s) 400, 1252
BtsIMutI CAGTG 3 cut(s) 355, 898, 1276
Cac8I GCNNGC 1 cut(s) 370
CciI TCATGA 1 cut(s) 814
CfoI GCGC 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 1159
Cfr13I GGNCC 4 cut(s) 437, 740, 1086, 1437
CseI GACGC 1 cut(s) 484
CsiI ACCWGGT 1 cut(s) 439
Csp6I GTAC 1 cut(s) 481
CviAII CATG 6 cut(s) 434, 493, 542, 729, 815, 1073
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 5 cut(s) 840, 881, 907, 1200, 1208
DpnI GATC 4 cut(s) 548, 699, 1118, 1151
DpnII GATC 4 cut(s) 546, 697, 1116, 1149
DraIII CACNNNGTG 1 cut(s) 107
EaeI YGGCCR 1 cut(s) 1157
Eam1104I CTCTTC 4 cut(s) 155, 978, 1271, 1422
EarI CTCTTC 4 cut(s) 155, 978, 1271, 1422
Eco130I CCWWGG 1 cut(s) 1441
Eco24I GRGCYC 1 cut(s) 1051
Eco47I GGWCC 2 cut(s) 437, 1437
Eco57I CTGAAG 3 cut(s) 246, 657, 1017
Eco72I CACGTG 1 cut(s) 104
EcoO109I RGGNCCY 2 cut(s) 1086, 1437
EcoRI GAATTC 2 cut(s) 414, 850
EcoRII CCWGG 2 cut(s) 439, 1154
EcoT14I CCWWGG 1 cut(s) 1441
EcoT38I GRGCYC 1 cut(s) 1051
ErhI CCWWGG 1 cut(s) 1441
Esp3I CGTCTC 2 cut(s) 272, 1358
FaeI CATG 6 cut(s) 437, 496, 545, 732, 818, 1076
FalI AAGNNNNNCTT 2 cut(s) 1333, 1365
FaqI GGGAC 3 cut(s) 336, 1041, 1423
FatI CATG 6 cut(s) 433, 492, 541, 728, 814, 1072
FauI CCCGC 1 cut(s) 546
FbaI TGATCA 1 cut(s) 1149
Fnu4HI GCNGC 3 cut(s) 332, 402, 462
FokI GGATG 2 cut(s) 407, 1259
FriOI GRGCYC 1 cut(s) 1051
Fsp4HI GCNGC 3 cut(s) 332, 402, 462
FspBI CTAG 1 cut(s) 77
GlaI GCGC 1 cut(s) 312
GluI GCNGC 3 cut(s) 332, 402, 462
HaeIII GGCC 4 cut(s) 60, 741, 1088, 1159
HapII CCGG 3 cut(s) 743, 1137, 1160
HgaI GACGC 1 cut(s) 484
HhaI GCGC 1 cut(s) 313
Hin1II CATG 6 cut(s) 437, 496, 545, 732, 818, 1076
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HindIII AAGCTT 1 cut(s) 1347
HinfI GANTC 4 cut(s) 509, 603, 1063, 1198
HpaII CCGG 3 cut(s) 743, 1137, 1160
HphI GGTGA 5 cut(s) 277, 605, 1144, 1207, 1331
Hpy188I TCNGA 6 cut(s) 420, 508, 514, 1203, 1243, 1408
Hpy188III TCNNGA 7 cut(s) 550, 652, 780, 815, 926, 936, 1449
Hpy99I CGWCG 1 cut(s) 1402
HpyCH4III ACNGT 2 cut(s) 359, 945
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 5 cut(s) 143, 368, 464, 695, 756
HpyF10VI GCNNNNNNNGC 5 cut(s) 308, 876, 1085, 1229, 1376
HpyF3I CTNAG 5 cut(s) 840, 881, 907, 1200, 1208
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 6 cut(s) 437, 496, 545, 732, 818, 1076
HspAI GCGC 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 1149
Kzo9I GATC 4 cut(s) 546, 697, 1116, 1149
LmnI GCTCC 2 cut(s) 645, 1054
Lsp1109I GCAGC 3 cut(s) 343, 388, 448
LweI GCATC 1 cut(s) 603
MabI ACCWGGT 1 cut(s) 439
MaeI CTAG 1 cut(s) 77
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 2 cut(s) 1195, 1300
MalI GATC 4 cut(s) 548, 699, 1118, 1151
MboI GATC 4 cut(s) 546, 697, 1116, 1149
MhlI GDGCHC 2 cut(s) 1051, 1234
MluCI AATT 7 cut(s) 246, 414, 515, 835, 850, 912, 1422
MlyI GAGTC 2 cut(s) 597, 1192
MmeI TCCRAC 1 cut(s) 1221
MseI TTAA 7 cut(s) 111, 663, 834, 960, 1179, 1290, 1412
MspI CCGG 3 cut(s) 743, 1137, 1160
MspR9I CCNGG 4 cut(s) 441, 743, 1138, 1156
MvaI CCWGG 2 cut(s) 441, 1156
MwoI GCNNNNNNNGC 5 cut(s) 308, 876, 1085, 1229, 1376
NciI CCSGG 2 cut(s) 743, 1138
NdeII GATC 4 cut(s) 546, 697, 1116, 1149
NlaIII CATG 6 cut(s) 437, 496, 545, 732, 818, 1076
NlaIV GGNNCC 4 cut(s) 1050, 1087, 1143, 1439
NmuCI GTSAC 1 cut(s) 1195
PagI TCATGA 1 cut(s) 814
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 2 cut(s) 509, 1063
PkrI GCNGC 3 cut(s) 333, 403, 463
PleI GAGTC 2 cut(s) 597, 1192
PmaCI CACGTG 1 cut(s) 104
PmlI CACGTG 1 cut(s) 104
PpsI GAGTC 2 cut(s) 597, 1192
Ppu21I YACGTR 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 1437
PshBI ATTAAT 1 cut(s) 663
PsiI TTATAA 1 cut(s) 1037
Psp5II RGGWCCY 1 cut(s) 1437
Psp6I CCWGG 2 cut(s) 439, 1154
PspCI CACGTG 1 cut(s) 104
PspGI CCWGG 2 cut(s) 439, 1154
PspN4I GGNNCC 4 cut(s) 1050, 1087, 1143, 1439
PspPI GGNCC 4 cut(s) 437, 740, 1086, 1437
PspPPI RGGWCCY 1 cut(s) 1437
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
SaqAI TTAA 7 cut(s) 111, 663, 834, 960, 1179, 1290, 1412
SatI GCNGC 3 cut(s) 332, 402, 462
Sau3AI GATC 4 cut(s) 546, 697, 1116, 1149
Sau96I GGNCC 4 cut(s) 437, 740, 1086, 1437
SchI GAGTC 2 cut(s) 597, 1192
ScrFI CCNGG 4 cut(s) 441, 743, 1138, 1156
SduI GDGCHC 2 cut(s) 1051, 1234
SexAI ACCWGGT 1 cut(s) 439
SfaNI GCATC 1 cut(s) 603
SfcI CTRYAG 2 cut(s) 703, 918
SinI GGWCC 2 cut(s) 437, 1437
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
Sse9I AATT 7 cut(s) 246, 414, 515, 835, 850, 912, 1422
SsiI CCGC 1 cut(s) 539
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 4 cut(s) 439, 741, 1136, 1154
StyI CCWWGG 1 cut(s) 1441
TaaI ACNGT 2 cut(s) 359, 945
TaiI ACGT 1 cut(s) 106
TaqI TCGA 4 cut(s) 165, 195, 618, 1115
TaqII GACCGA 1 cut(s) 1277
TasI AATT 7 cut(s) 246, 414, 515, 835, 850, 912, 1422
TfiI GAWTC 2 cut(s) 509, 1063
Tru1I TTAA 7 cut(s) 111, 663, 834, 960, 1179, 1290, 1412
Tru9I TTAA 7 cut(s) 111, 663, 834, 960, 1179, 1290, 1412
TscAI CASTG 3 cut(s) 362, 898, 1276
TseFI GTSAC 1 cut(s) 1195
TseI GCWGC 3 cut(s) 331, 401, 461
Tsp45I GTSAC 1 cut(s) 1195
TspGWI ACGGA 4 cut(s) 258, 407, 806, 1347
TspRI CASTG 3 cut(s) 362, 898, 1276
VpaK11BI GGWCC 2 cut(s) 437, 1437
VspI ATTAAT 1 cut(s) 663
XapI RAATTY 3 cut(s) 414, 515, 850
XcmI CCANNNNNNNNNTGG 2 cut(s) 178, 1152
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.