Rh6DG184800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0014473
Physical Location & Seq
Forward (+)
32982172 .. 32986246
4075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG184800.1

Sequence Viewer

Length: 711 bp
ATGAGCTTAGCACTCGTCCAGGGTTATTCTTCCTCTGAAGAAGAAGAAGAAGCAGAAGAAGGCCAAAATGGCCTCCATTACCATAACTCATCGGACGACGACGGCGACGGCGTTGAGCACAAATTAGCATCCTCCTCCGTTTATGAGTCGTCCCGACCCACCGCCTCCAATACCTCCGCCCTCCCGTCTGCTTCCGACGCCTTCTCCGAGATTTCGGGACCCCCTGCTTTTCTGAACAACTGCGTCCAAGAATACTCCCCCCAGCAAGTGAGGCATGATGCTCGTCACAACAAACATCGCAAGGAAAAGAAAGACTTACCAGCTGGTGCAGTAGTGGAGTCCAAAGCTCATTTAGTTGGTATCCATGAACGAGTAAGAAGTGATCTTGATGGTAAGCAACCTCCAACAGTAGCTGATGCAAGCACAAATCAAGGAGGCAAGCGTGTGGCAACTGTAACAAATCCCAGTGCAGAGGATGCTGCAGCGCTTCTGAGGATGTGTTTGCAATGTGGAATACCCAAGACCTTCTCCAATGCACGGGGAATGGTCTGCCCAGCATGTGGTGATCGGCCTGTAGAGGCAACCGACGACTCCAAGAAGAAGGGGTCTACAATCAAAGATAAGGAGAAGAATAAGAGGATGAAAGGCCAGTCATCTCATGCTACATGGAAAAGTGAAACTGAAATGCAGCTTCGACAGCAATTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

25.58

Weight (kDa)

6.0

Isoelectric Point (pI)

62.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64160
fragaria_vesca FvH4_2g12710
malus_domestica MD10G1051500.v1.1
prunus_persica Prupe.8G062400_v2.0.a1
pyrus_communis pycom10g03630
rosa_chinensis RchiOBHm_Chr6g0273461
rosa_laevigata RLG00000013615
rosa_multiflora Rmu_co8520659.1_g000001 Rmu_sc0005891.1_g000032 Rmu_sc0010380.1_g000009
rosa_roxburghii Rroxscaffold_7G00195310
rosa_rugosa Rorug06G0075500
rosa_samantha Rh6AG190200 Rh6BG193700 Rh6CG193200 Rh6DG184800
rosa_wichuraiana Rw6G016640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 560
AccI GTMKAC 1 cut(s) 608
AciI CCGC 2 cut(s) 162, 177
AcuI CTGAAG 1 cut(s) 57
AcyI GRCGYC 1 cut(s) 198
AfeI AGCGCT 1 cut(s) 486
AfiI CCNNNNNNNGG 2 cut(s) 537, 560
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 5 cut(s) 6, 323, 347, 413, 691
AluI AGCT 5 cut(s) 6, 323, 347, 413, 691
Alw21I GWGCWC 1 cut(s) 120
AlwNI CAGNNNCTG 1 cut(s) 413
Aor51HI AGCGCT 1 cut(s) 486
AoxI GGCC 4 cut(s) 61, 70, 569, 646
ApeKI GCWGC 3 cut(s) 479, 482, 688
AspLEI GCGC 1 cut(s) 487
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 575
AvaII GGWCC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 466, 494, 700
BccI CCATC 1 cut(s) 383
BceAI ACGGC 2 cut(s) 118, 124
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciT130I CCWGG 1 cut(s) 20
BciVI GTATCC 1 cut(s) 371
BfaI CTAG 1 cut(s) 709
BfmI CTRYAG 2 cut(s) 480, 573
BfoI RGCGCY 1 cut(s) 488
BfuI GTATCC 1 cut(s) 371
BglI GCCNNNNNGGC 1 cut(s) 69
BisI GCNGC 3 cut(s) 480, 483, 689
BlpI GCTNAGC 1 cut(s) 7
BlsI GCNGC 3 cut(s) 481, 484, 690
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 219, 220
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 459
BmsI GCATC 4 cut(s) 137, 268, 406, 466
BmuI ACTGGG 1 cut(s) 459
Bpu1102I GCTNAGC 1 cut(s) 7
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 537, 560
Bse1I ACTGG 2 cut(s) 465, 649
Bse3DI GCAATG 1 cut(s) 512
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 4 cut(s) 128, 481, 501, 645
BseLI CCNNNNNNNGG 2 cut(s) 537, 560
BseMI GCAATG 1 cut(s) 512
BseMII CTCAG 1 cut(s) 482
BseNI ACTGG 2 cut(s) 465, 649
BseRI GAGGAG 1 cut(s) 124
BseXI GCAGC 3 cut(s) 466, 494, 700
BseYI CCCAGC 2 cut(s) 261, 553
BsgI GTGCAG 2 cut(s) 348, 489
BshFI GGCC 4 cut(s) 63, 72, 571, 648
BsiHKAI GWGCWC 1 cut(s) 120
BslFI GGGAC 2 cut(s) 136, 231
BslI CCNNNNNNNGG 2 cut(s) 537, 560
BsmFI GGGAC 2 cut(s) 136, 231
BsnI GGCC 4 cut(s) 63, 72, 571, 648
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 2 cut(s) 382, 565
Bsp1720I GCTNAGC 1 cut(s) 7
BspACI CCGC 2 cut(s) 162, 177
BspANI GGCC 4 cut(s) 63, 72, 571, 648
BspCNI CTCAG 1 cut(s) 483
BspLI GGNNCC 2 cut(s) 219, 220
BspMAI CTGCAG 1 cut(s) 484
BsrDI GCAATG 1 cut(s) 512
BsrI ACTGG 2 cut(s) 465, 649
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 2 cut(s) 382, 565
BssNI GRCGYC 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 409, 454
BstACI GRCGYC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 476
BstC8I GCNNGC 2 cut(s) 421, 440
BstDEI CTNAG 2 cut(s) 7, 491
BstF5I GGATG 4 cut(s) 128, 481, 501, 645
BstH2I RGCGCY 1 cut(s) 488
BstHHI GCGC 1 cut(s) 487
BstKTI GATC 2 cut(s) 385, 568
BstMBI GATC 2 cut(s) 382, 565
BstMWI GCNNNNNNNGC 5 cut(s) 69, 197, 271, 476, 697
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 561
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 2 cut(s) 480, 573
BstV1I GCAGC 3 cut(s) 466, 494, 700
BsuI GTATCC 1 cut(s) 371
BsuRI GGCC 4 cut(s) 63, 72, 571, 648
BtgZI GCGATG 1 cut(s) 281
BtsCI GGATG 4 cut(s) 128, 481, 501, 645
BtsIMutI CAGTG 1 cut(s) 472
Cac8I GCNNGC 2 cut(s) 421, 440
CaiI CAGNNNCTG 1 cut(s) 413
CfoI GCGC 1 cut(s) 487
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 2 cut(s) 206, 232
CviAII CATG 5 cut(s) 275, 365, 558, 659, 666
CviJI RGCY 9 cut(s) 6, 63, 72, 323, 347, 413, 571, 648, 691
CviKI_1 RGCY 9 cut(s) 6, 63, 72, 323, 347, 413, 571, 648, 691
DdeI CTNAG 2 cut(s) 7, 491
DpnI GATC 2 cut(s) 384, 567
DpnII GATC 2 cut(s) 382, 565
EciI GGCGGA 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 218
Eco47III AGCGCT 1 cut(s) 486
Eco57I CTGAAG 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 18
FaeI CATG 5 cut(s) 278, 368, 561, 662, 669
FaiI YATR 7 cut(s) 84, 144, 276, 366, 559, 660, 667
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 2 cut(s) 136, 231
FatI CATG 5 cut(s) 274, 364, 557, 658, 665
FblI GTMKAC 1 cut(s) 608
Fnu4HI GCNGC 3 cut(s) 480, 483, 689
FokI GGATG 4 cut(s) 115, 488, 508, 652
Fsp4HI GCNGC 3 cut(s) 480, 483, 689
FspBI CTAG 1 cut(s) 709
GlaI GCGC 1 cut(s) 486
GluI GCNGC 3 cut(s) 480, 483, 689
GsaI CCCAGC 2 cut(s) 265, 557
HaeII RGCGCY 1 cut(s) 488
HaeIII GGCC 4 cut(s) 63, 72, 571, 648
HgaI GACGC 2 cut(s) 206, 232
HhaI GCGC 1 cut(s) 487
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 5 cut(s) 278, 368, 561, 662, 669
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HinfI GANTC 3 cut(s) 146, 338, 590
HphI GGTGA 1 cut(s) 575
Hpy166II GTNNAC 1 cut(s) 609
Hpy188I TCNGA 6 cut(s) 37, 94, 196, 208, 234, 492
Hpy188III TCNNGA 3 cut(s) 153, 216, 386
Hpy8I GTNNAC 1 cut(s) 609
Hpy99I CGWCG 5 cut(s) 101, 104, 110, 200, 590
HpyAV CCTTC 4 cut(s) 53, 211, 535, 595
HpyCH4III ACNGT 2 cut(s) 409, 454
HpyCH4V TGCA 7 cut(s) 329, 419, 470, 482, 505, 536, 688
HpyF10VI GCNNNNNNNGC 5 cut(s) 69, 197, 271, 476, 697
HpyF3I CTNAG 2 cut(s) 7, 491
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 5 cut(s) 278, 368, 561, 662, 669
HspAI GCGC 1 cut(s) 485
KflI GGGWCCC 1 cut(s) 218
Kzo9I GATC 2 cut(s) 382, 565
Lsp1109I GCAGC 3 cut(s) 466, 494, 700
LweI GCATC 4 cut(s) 137, 268, 406, 466
MaeI CTAG 1 cut(s) 709
MaeIII GTNAC 2 cut(s) 284, 454
MalI GATC 2 cut(s) 384, 567
MboI GATC 2 cut(s) 382, 565
MboII GAAGA 8 cut(s) 21, 50, 53, 56, 59, 68, 610, 640
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 2 cut(s) 122, 701
MlyI GAGTC 3 cut(s) 155, 347, 584
MmeI TCCRAC 2 cut(s) 219, 428
MspA1I CMGCKG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 5 cut(s) 69, 197, 271, 476, 697
NdeII GATC 2 cut(s) 382, 565
NlaIII CATG 5 cut(s) 278, 368, 561, 662, 669
NlaIV GGNNCC 2 cut(s) 219, 220
NmuCI GTSAC 1 cut(s) 284
NspI RCATGY 1 cut(s) 561
PcsI WCGNNNNNNNCGW 3 cut(s) 102, 108, 204
PflMI CCANNNNNTGG 1 cut(s) 560
PkrI GCNGC 3 cut(s) 481, 484, 690
PleI GAGTC 3 cut(s) 154, 346, 584
PpsI GAGTC 3 cut(s) 154, 346, 584
PpuMI RGGWCCY 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 18
PspFI CCCAGC 2 cut(s) 261, 553
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 219, 220
PspPI GGNCC 1 cut(s) 218
PspPPI RGGWCCY 1 cut(s) 218
PstI CTGCAG 1 cut(s) 484
PstNI CAGNNNCTG 1 cut(s) 413
PvuII CAGCTG 1 cut(s) 323
SatI GCNGC 3 cut(s) 480, 483, 689
Sau3AI GATC 2 cut(s) 382, 565
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 3 cut(s) 155, 347, 584
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 1 cut(s) 120
SetI ASST 8 cut(s) 8, 176, 325, 349, 403, 415, 527, 693
SfaNI GCATC 4 cut(s) 137, 268, 406, 466
SfcI CTRYAG 2 cut(s) 480, 573
SfiI GGCCNNNNNGGCC 1 cut(s) 69
SinI GGWCC 1 cut(s) 218
Sse9I AATT 2 cut(s) 122, 701
SsiI CCGC 2 cut(s) 162, 177
SspMI CTAG 1 cut(s) 709
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 409, 454
TaqI TCGA 1 cut(s) 694
TasI AATT 2 cut(s) 122, 701
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 3 cut(s) 479, 482, 688
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 2 cut(s) 381, 656
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 1 cut(s) 472
Van91I CCANNNNNTGG 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 218
XceI RCATGY 1 cut(s) 561
XmiI GTMKAC 1 cut(s) 608
XspI CTAG 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.