FvH4_2g12740

CS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013609
Physical Location & Seq
Forward (+)
11198023 .. 11200329
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12740.t2

Sequence Viewer

Length: 552 bp
ATGGGCCGACATCCTATTGTCAAGTGGGCGCAGCGGCCTGATACGCTTTACATCACTATTGACTTGCCTGATGCCCAGGATGTAAAGCTCAAGCTGGGTCCTGAGGGAAAGTTTCTATTTTCTGCTACTACTGGAAAAGAAAAGACACCTTATGAAGTTGACCTTGATCTCTATGACAAGATTGATGTAAATGAGAGTAAGGCTAGTATTGGCTTGAGGAATATCTGTTACCTAGTAAAAAAAGCTGAAAGTAAATGGTGGAGCAGGTTGATAAAGCAAGAAGGAAAAGCTCCTGTGTTCTTGAAGGTTGATTGGGATAAATGGGTGGATGAGGATGAGGAGTCGGATGCCCAAGGACCTGGAAATGACATGGACTTCGGCGACTTAGATTTTTCTAAGCTGAGTATGGGTGGTGGGGGCGATGCTCTTGACGATGAATTTGACGATAGCAGTGACACTGAAGATGAAAACGTTGAAGCACCATCTACCACTGCAGAATCTGATACCAAGCTTCCTGCAAGTGTGGAGGATGAAGCAAAGCCTTCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko01100 map00590 map01100
Pfam Domains
Protein Families
CS

Protein Analysis

184

Amino Acids

20.35

Weight (kDa)

4.29

Isoelectric Point (pI)

29.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 7 - 68 8.4e-08 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013609)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12740 FvH4_2g12740
malus_domestica MD05G1037300.v1.1 MD10G1041200.v1.1
prunus_persica Prupe.8G045200_v2.0.a1 Prupe.8G045200_v2.0.a1
pyrus_communis pycom05g02760 pycom10g02830
rosa_chinensis RchiOBHm_Chr6g0273521
rosa_laevigata RLG00000013610
rosa_multiflora Rmu_sc0001419.1_g000004
rosa_roxburghii Rroxscaffold_7G00195260
rosa_rugosa Rorug06G0076000
rosa_samantha Rh6AG190700 Rh6CG193800 Rh6DG185600
rosa_wichuraiana Rw6G005270 Rw6G016690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 255
AciI CCGC 1 cut(s) 34
AclI AACGTT 1 cut(s) 471
AcsI RAATTY 1 cut(s) 437
AcuI CTGAAG 2 cut(s) 480, 528
AgsI TTSAA 2 cut(s) 304, 476
AjnI CCWGG 2 cut(s) 75, 358
AluBI AGCT 6 cut(s) 88, 94, 245, 290, 400, 511
AluI AGCT 6 cut(s) 88, 94, 245, 290, 400, 511
AlwNI CAGNNNCTG 1 cut(s) 500
AoxI GGCC 2 cut(s) 4, 35
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 437
ArsI GACNNNNNNTTYG 4 cut(s) 359, 391, 422, 454
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 3 cut(s) 4, 98, 356
AvaII GGWCC 2 cut(s) 98, 356
AxyI CCTNAGG 1 cut(s) 102
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 490
BciT130I CCWGG 2 cut(s) 77, 360
BfaI CTAG 2 cut(s) 204, 233
BfmI CTRYAG 1 cut(s) 492
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 2 cut(s) 32, 35
BlsI GCNGC 2 cut(s) 33, 36
Bme1390I CCNGG 2 cut(s) 77, 360
Bme18I GGWCC 2 cut(s) 98, 356
BmgT120I GGNCC 3 cut(s) 4, 98, 356
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 2 cut(s) 77, 360
BmsI GCATC 3 cut(s) 61, 337, 412
BpuEI CTTGAG 2 cut(s) 74, 235
BsaJI CCNNGG 2 cut(s) 75, 352
Bse1I ACTGG 1 cut(s) 136
Bse21I CCTNAGG 1 cut(s) 102
BseBI CCWGG 2 cut(s) 77, 360
BseDI CCNNGG 2 cut(s) 75, 352
BseGI GGATG 6 cut(s) 10, 85, 334, 340, 352, 535
BseMII CTCAG 2 cut(s) 93, 392
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 353
BseXI GCAGC 1 cut(s) 43
BseYI CCCAGC 1 cut(s) 94
BshFI GGCC 2 cut(s) 6, 37
BsnI GGCC 2 cut(s) 6, 37
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 1 cut(s) 34
BspANI GGCC 2 cut(s) 6, 37
BspCNI CTCAG 2 cut(s) 94, 393
BspLI GGNNCC 1 cut(s) 99
BspMAI CTGCAG 1 cut(s) 496
BspMI ACCTGC 1 cut(s) 255
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 75, 352
BssMI GATC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 352
Bst2UI CCWGG 2 cut(s) 77, 360
BstDEI CTNAG 4 cut(s) 102, 385, 396, 401
BstF5I GGATG 6 cut(s) 10, 85, 334, 340, 352, 535
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 2 cut(s) 77, 360
BstSCI CCNGG 2 cut(s) 75, 358
BstSFI CTRYAG 1 cut(s) 492
BstV1I GCAGC 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 359
Bsu36I CCTNAGG 1 cut(s) 102
BsuRI GGCC 2 cut(s) 6, 37
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 6 cut(s) 10, 85, 334, 340, 352, 535
BtsI GCAGTG 2 cut(s) 457, 489
BtsIMutI CAGTG 3 cut(s) 456, 457, 489
BveI ACCTGC 1 cut(s) 255
CaiI CAGNNNCTG 1 cut(s) 500
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 3 cut(s) 4, 98, 356
CviAII CATG 1 cut(s) 370
DdeI CTNAG 4 cut(s) 102, 385, 396, 401
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 352
Eco47I GGWCC 2 cut(s) 98, 356
Eco57I CTGAAG 2 cut(s) 480, 528
Eco81I CCTNAGG 1 cut(s) 102
EcoO109I RGGNCCY 2 cut(s) 98, 356
EcoRII CCWGG 2 cut(s) 75, 358
EcoT14I CCWWGG 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 1 cut(s) 373
FaiI YATR 4 cut(s) 153, 174, 371, 407
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FatI CATG 1 cut(s) 369
Fnu4HI GCNGC 2 cut(s) 32, 35
FokI GGATG 5 cut(s) 92, 341, 347, 359, 542
Fsp4HI GCNGC 2 cut(s) 32, 35
FspBI CTAG 2 cut(s) 204, 233
GlaI GCGC 1 cut(s) 30
GluI GCNGC 2 cut(s) 32, 35
GsaI CCCAGC 1 cut(s) 98
HaeIII GGCC 2 cut(s) 6, 37
HhaI GCGC 1 cut(s) 31
Hin1II CATG 1 cut(s) 373
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 2 cut(s) 341, 497
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 3 cut(s) 346, 502, 551
Hpy188III TCNNGA 3 cut(s) 101, 301, 428
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 3 cut(s) 275, 298, 552
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 2 cut(s) 494, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 4 cut(s) 102, 385, 396, 401
HpySE526I ACGT 1 cut(s) 471
Hsp92II CATG 1 cut(s) 373
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 2 cut(s) 261, 295
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 3 cut(s) 61, 337, 412
MaeI CTAG 2 cut(s) 204, 233
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 2 cut(s) 227, 452
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 1 cut(s) 473
MluCI AATT 1 cut(s) 437
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 5 cut(s) 97, 210, 325, 331, 520
MspA1I CMGCKG 1 cut(s) 34
MspR9I CCNGG 2 cut(s) 77, 360
MvaI CCWGG 2 cut(s) 77, 360
MwoI GCNNNNNNNGC 1 cut(s) 43
NdeII GATC 1 cut(s) 166
NlaIII CATG 1 cut(s) 373
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 452
PfeI GAWTC 1 cut(s) 497
PkrI GCNGC 2 cut(s) 33, 36
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PpuMI RGGWCCY 2 cut(s) 98, 356
Psp1406I AACGTT 1 cut(s) 471
Psp5II RGGWCCY 2 cut(s) 98, 356
Psp6I CCWGG 2 cut(s) 75, 358
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 2 cut(s) 75, 358
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 3 cut(s) 4, 98, 356
PspPPI RGGWCCY 2 cut(s) 98, 356
PstI CTGCAG 1 cut(s) 496
PstNI CAGNNNCTG 1 cut(s) 500
SatI GCNGC 2 cut(s) 32, 35
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 3 cut(s) 4, 98, 356
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 2 cut(s) 77, 360
SfaNI GCATC 3 cut(s) 61, 337, 412
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 2 cut(s) 98, 356
SmlI CTYRAG 2 cut(s) 89, 214
SmoI CTYRAG 2 cut(s) 89, 214
Sse9I AATT 1 cut(s) 437
SsiI CCGC 1 cut(s) 34
SspMI CTAG 2 cut(s) 204, 233
StyD4I CCNGG 2 cut(s) 75, 358
StyI CCWWGG 1 cut(s) 352
TaiI ACGT 1 cut(s) 474
TasI AATT 1 cut(s) 437
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 1 cut(s) 497
TscAI CASTG 3 cut(s) 457, 463, 496
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 4 cut(s) 168, 450, 480, 546
TspRI CASTG 3 cut(s) 457, 463, 496
VpaK11BI GGWCC 2 cut(s) 98, 356
XapI RAATTY 1 cut(s) 437
XspI CTAG 2 cut(s) 204, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.