Rw6G005270

CS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013609
Physical Location & Seq
Reverse (-)
8506328 .. 8509396
3069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005270.1

Sequence Viewer

Length: 486 bp
ATGAGTCGACATCCTAGTGTGAAGTGGGCTCAGCAGCCTGATACGCTTTACATCACTATAGAGTTGCCTGATGCCGAGGACGTAAAGCTTAAACTGGAGCCTGAAGGAAAGTTTCTATTCTCTGCTACAACTGGAGCAGAAAAGACACCTTATGTAGTTGATCTTGATCTCTATGACAAGATTGATGTGACTGAGAGTAGGTATACTGTTGGCTCGGGAAATATCTTTCACCTAGTGAAAAAAGCTGAAAATAAATGGTGGAGCAGATTGATAAAACAAGAAGGAAAAGCTCCTGGGTTCTTGAAAGTTGATTGGGATATGAGCAATGTCTTCCATGGGGGGAACGATCCAAGCAGGTGCCGCTTGAAATTGAATATGAGATCGGGAGGTGCGAAGAGGGATGGGGCACCGAGTGGTGGTTTTGATCGGGGAGAGAGAGAGAGAGAGAACAGAGTTCGTACTTCAACAGCTTCAGAGTATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko01100 map00590 map01100
Pfam Domains
Protein Families
CS

Protein Analysis

161

Amino Acids

18.18

Weight (kDa)

8.61

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 5 - 81 1.8e-11 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013609)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12740 FvH4_2g12740
malus_domestica MD05G1037300.v1.1 MD10G1041200.v1.1
prunus_persica Prupe.8G045200_v2.0.a1 Prupe.8G045200_v2.0.a1
pyrus_communis pycom05g02760 pycom10g02830
rosa_chinensis RchiOBHm_Chr6g0273521
rosa_laevigata RLG00000013610
rosa_multiflora Rmu_sc0001419.1_g000004
rosa_roxburghii Rroxscaffold_7G00195260
rosa_rugosa Rorug06G0076000
rosa_samantha Rh6AG190700 Rh6CG193800 Rh6DG185600
rosa_wichuraiana Rw6G005270 Rw6G016690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 345
Acc36I ACCTGC 1 cut(s) 345
AccB1I GGYRCC 2 cut(s) 357, 406
AccI GTMKAC 2 cut(s) 7, 203
AciI CCGC 1 cut(s) 361
AclWI GGATC 1 cut(s) 341
AcuI CTGAAG 2 cut(s) 123, 456
AdeI CACNNNGTG 2 cut(s) 235, 413
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 4 cut(s) 304, 367, 373, 465
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 4 cut(s) 88, 245, 290, 470
AluI AGCT 4 cut(s) 88, 245, 290, 470
AlwI GGATC 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 409
BanI GGYRCC 2 cut(s) 357, 406
BanII GRGCYC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 395
BciT130I CCWGG 1 cut(s) 294
BfaI CTAG 2 cut(s) 15, 233
BfmI CTRYAG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 345
BisI GCNGC 2 cut(s) 35, 361
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 2 cut(s) 36, 362
Bme1390I CCNGG 1 cut(s) 294
BmeT110I CYCGRG 1 cut(s) 214
BmiI GGNNCC 3 cut(s) 99, 359, 408
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 61
BpiI GAAGAC 1 cut(s) 322
BpmI CTGGAG 2 cut(s) 116, 153
Bpu1102I GCTNAGC 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 75, 293, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse1I ACTGG 2 cut(s) 99, 136
Bse3DI GCAATG 1 cut(s) 331
Bse8I GATNNNNATC 1 cut(s) 165
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 3 cut(s) 75, 293, 334
BseGI GGATG 2 cut(s) 10, 406
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 416
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 2 cut(s) 44, 183
BseNI ACTGG 2 cut(s) 99, 136
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 1 cut(s) 46
BshNI GGYRCC 2 cut(s) 357, 406
BsiHKCI CYCGRG 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 416
BsoBI CYCGRG 1 cut(s) 214
Bsp1286I GDGCHC 2 cut(s) 31, 409
Bsp143I GATC 5 cut(s) 160, 166, 346, 380, 424
Bsp1720I GCTNAGC 1 cut(s) 30
Bsp19I CCATGG 1 cut(s) 334
BspACI CCGC 1 cut(s) 361
BspCNI CTCAG 2 cut(s) 43, 184
BspLI GGNNCC 3 cut(s) 99, 359, 408
BspMI ACCTGC 1 cut(s) 345
BspPI GGATC 1 cut(s) 341
BspT107I GGYRCC 2 cut(s) 357, 406
BsrDI GCAATG 1 cut(s) 331
BsrI ACTGG 2 cut(s) 99, 136
BssECI CCNNGG 3 cut(s) 75, 293, 334
BssMI GATC 5 cut(s) 160, 166, 346, 380, 424
BssNAI GTATAC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 334
Bst1107I GTATAC 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 389
BstDEI CTNAG 2 cut(s) 30, 192
BstDSI CCRYGG 1 cut(s) 334
BstF5I GGATG 2 cut(s) 10, 406
BstKTI GATC 5 cut(s) 163, 169, 349, 383, 427
BstMBI GATC 5 cut(s) 160, 166, 346, 380, 424
BstMWI GCNNNNNNNGC 2 cut(s) 43, 360
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 409
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 322
BstZ17I GTATAC 1 cut(s) 204
BtgI CCRYGG 1 cut(s) 334
BtsCI GGATG 2 cut(s) 10, 406
BveI ACCTGC 1 cut(s) 345
Csp6I GTAC 1 cut(s) 459
CviAII CATG 1 cut(s) 335
CviJI RGCY 8 cut(s) 29, 37, 88, 100, 213, 245, 290, 470
CviKI_1 RGCY 8 cut(s) 29, 37, 88, 100, 213, 245, 290, 470
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 2 cut(s) 30, 192
DpnI GATC 5 cut(s) 162, 168, 348, 382, 426
DpnII GATC 5 cut(s) 160, 166, 346, 380, 424
DraIII CACNNNGTG 2 cut(s) 235, 413
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 31
Eco57I CTGAAG 2 cut(s) 123, 456
Eco88I CYCGRG 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 1 cut(s) 338
FaiI YATR 8 cut(s) 59, 153, 174, 204, 320, 336, 377, 480
FatI CATG 1 cut(s) 334
FblI GTMKAC 2 cut(s) 7, 203
Fnu4HI GCNGC 2 cut(s) 35, 361
FokI GGATG 1 cut(s) 413
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 2 cut(s) 35, 361
FspBI CTAG 2 cut(s) 15, 233
GluI GCNGC 2 cut(s) 35, 361
GsuI CTGGAG 2 cut(s) 116, 153
Hin1II CATG 1 cut(s) 338
HincII GTYRAC 1 cut(s) 8
HindII GTYRAC 1 cut(s) 8
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 2 cut(s) 8, 204
Hpy188I TCNGA 1 cut(s) 475
Hpy188III TCNNGA 4 cut(s) 164, 216, 301, 384
Hpy8I GTNNAC 2 cut(s) 8, 204
HpyAV CCTTC 2 cut(s) 98, 275
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 360
HpyF3I CTNAG 2 cut(s) 30, 192
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 1 cut(s) 338
Kzo9I GATC 5 cut(s) 160, 166, 346, 380, 424
LmnI GCTCC 4 cut(s) 97, 134, 261, 295
LpnPI CCDG 8 cut(s) 51, 80, 81, 114, 117, 279, 306, 340
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 61
MaeI CTAG 2 cut(s) 15, 233
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 187
MalI GATC 5 cut(s) 162, 168, 348, 382, 426
MboI GATC 5 cut(s) 160, 166, 346, 380, 424
MboII GAAGA 2 cut(s) 322, 406
MhlI GDGCHC 2 cut(s) 31, 409
MluCI AATT 1 cut(s) 368
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 3 cut(s) 70, 380, 390
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 43, 360
NcoI CCATGG 1 cut(s) 334
NdeII GATC 5 cut(s) 160, 166, 346, 380, 424
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 3 cut(s) 99, 359, 408
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 187
PaqCI CACCTGC 1 cut(s) 345
PcsI WCGNNNNNNNCGW 1 cut(s) 389
PkrI GCNGC 2 cut(s) 36, 362
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 3 cut(s) 99, 359, 408
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
RseI CAYNNNNRTG 1 cut(s) 15
SalI GTCGAC 1 cut(s) 6
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 2 cut(s) 35, 361
Sau3AI GATC 5 cut(s) 160, 166, 346, 380, 424
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 2 cut(s) 31, 409
SfaNI GCATC 1 cut(s) 61
SfcI CTRYAG 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 1 cut(s) 368
SsiI CCGC 1 cut(s) 361
SspMI CTAG 2 cut(s) 15, 233
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 7
TasI AATT 1 cut(s) 368
TauI GCSGC 1 cut(s) 363
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 187
XmiI GTMKAC 2 cut(s) 7, 203
XspI CTAG 2 cut(s) 15, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.