Prupe.8G045200_v2.0.a1

CS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013609
Physical Location & Seq
Reverse (-)
4703338 .. 4706125
2788 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G045200.2

Sequence Viewer

Length: 714 bp
ATGAGCCGACATCCTAATGTGAAATGGGCCCAGAGGTCTGATACGGTCTACATAACTATTAACTTGCCGGATGCCCACGATGTAAAGCTTAACCTGGAGCCTGAAGGAAAGTTTTTATTCTCTGCTACTACTGGACCAGAGAAGACACCTTATGAAGTTGACCTTGATCTCTATGACAAGATTGATGTAAATGAGAGCAAGGCTAGTGTTGGCTTGAGAAATATCTGTTACCTTGTGAAAAAGGCTGAGGATAAATGGTGGAGCAGGTTGATAAAACAACAGGGAAAAGCTCCTGTGTTTCTCAAAGTGGATTGGGATAAATGGGTTGATGAAGATGAAGAGCCGGAAGTGAAACCTGATGAAGGTGCTGGAAACAATATGGACTTTGGAGACTTTGATTTCTCTAAACTGAACATGGGTGGTGGCGGTGGCTTCAATCCTGAGGCTCTTGGCATGAACATGGGTGGCGCCGGTGGCTTCAATCCTAATGCTCTTGGCATGAACATGGGTGGCGCCAGTGGCTTCAATCCTGATGCTCTTGGCAACATGGGTGGCCCTGGTGGCTTCAATCCCGATGCTCTTGGCAACTTTGATGAAGAGATTGGTGATAGTGACACCGAGGATGAAATTGTTGACCAACCACCATCAGCTGCTGCACAATCTGATGCCAAACCACCTGCGAGTGGTGAGCATGACGCAAAGGCTTCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko01100 map00590 map01100
Pfam Domains
Protein Families
CS

Protein Analysis

238

Amino Acids

25.46

Weight (kDa)

4.35

Isoelectric Point (pI)

31.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013609)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12740 FvH4_2g12740
malus_domestica MD05G1037300.v1.1 MD10G1041200.v1.1
prunus_persica Prupe.8G045200_v2.0.a1 Prupe.8G045200_v2.0.a1
pyrus_communis pycom05g02760 pycom10g02830
rosa_chinensis RchiOBHm_Chr6g0273521
rosa_laevigata RLG00000013610
rosa_multiflora Rmu_sc0001419.1_g000004
rosa_roxburghii Rroxscaffold_7G00195260
rosa_rugosa Rorug06G0076000
rosa_samantha Rh6AG190700 Rh6CG193800 Rh6DG185600
rosa_wichuraiana Rw6G005270 Rw6G016690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 685
Acc36I ACCTGC 2 cut(s) 255, 685
AccB1I GGYRCC 2 cut(s) 467, 512
AccI GTMKAC 1 cut(s) 48
AciI CCGC 1 cut(s) 426
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 2 cut(s) 468, 513
AfiI CCNNNNNNNGG 2 cut(s) 362, 683
AgsI TTSAA 4 cut(s) 436, 481, 526, 568
AjnI CCWGG 2 cut(s) 93, 556
AluBI AGCT 3 cut(s) 88, 290, 650
AluI AGCT 3 cut(s) 88, 290, 650
Alw26I GTCTC 1 cut(s) 384
AlwNI CAGNNNCTG 1 cut(s) 653
AoxI GGCC 2 cut(s) 27, 553
ApaI GGGCCC 1 cut(s) 31
ApeKI GCWGC 2 cut(s) 650, 653
AspLEI GCGC 2 cut(s) 470, 515
AspS9I GGNCC 4 cut(s) 27, 28, 134, 554
AsuHPI GGTGA 2 cut(s) 617, 698
AvaII GGWCC 1 cut(s) 134
AxyI CCTNAGG 1 cut(s) 441
BaeGI GKGCMC 1 cut(s) 31
BanI GGYRCC 2 cut(s) 467, 512
BanII GRGCYC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 149
BbvCI CCTCAGC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 637, 640
BccI CCATC 1 cut(s) 652
BciT130I CCWGG 2 cut(s) 95, 558
BcoDI GTCTC 1 cut(s) 384
BfaI CTAG 1 cut(s) 204
BfoI RGCGCY 2 cut(s) 471, 516
BfuAI ACCTGC 2 cut(s) 255, 685
BglI GCCNNNNNGGC 1 cut(s) 561
BisI GCNGC 2 cut(s) 651, 654
BlsI GCNGC 2 cut(s) 652, 655
Bme1390I CCNGG 2 cut(s) 95, 558
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 4 cut(s) 27, 28, 134, 554
BmiI GGNNCC 4 cut(s) 29, 99, 469, 514
BmrFI CCNGG 2 cut(s) 95, 558
BmsI GCATC 4 cut(s) 61, 523, 565, 655
BpiI GAAGAC 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 116
Bpu10I CCTNAGC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 235
BsaHI GRCGYC 2 cut(s) 468, 513
BsaJI CCNNGG 2 cut(s) 556, 618
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 683
Bse118I RCCGGY 1 cut(s) 470
Bse1I ACTGG 2 cut(s) 136, 516
Bse21I CCTNAGG 1 cut(s) 441
BseBI CCWGG 2 cut(s) 95, 558
BseDI CCNNGG 2 cut(s) 556, 618
BseGI GGATG 3 cut(s) 10, 76, 628
BseLI CCNNNNNNNGG 2 cut(s) 362, 683
BseMII CTCAG 2 cut(s) 237, 432
BseNI ACTGG 2 cut(s) 136, 516
BseSI GKGCMC 1 cut(s) 31
BseXI GCAGC 2 cut(s) 637, 640
BsgI GTGCAG 1 cut(s) 639
BshFI GGCC 2 cut(s) 29, 555
BshNI GGYRCC 2 cut(s) 467, 512
BsiSI CCGG 3 cut(s) 68, 344, 471
BslI CCNNNNNNNGG 2 cut(s) 362, 683
BsmAI GTCTC 1 cut(s) 384
BsnI GGCC 2 cut(s) 29, 555
Bsp120I GGGCCC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 1 cut(s) 426
BspANI GGCC 2 cut(s) 29, 555
BspCNI CTCAG 2 cut(s) 238, 433
BspLI GGNNCC 4 cut(s) 29, 99, 469, 514
BspMI ACCTGC 2 cut(s) 255, 685
BspQI GCTCTTC 1 cut(s) 333
BspT107I GGYRCC 2 cut(s) 467, 512
BsrFI RCCGGY 1 cut(s) 470
BsrI ACTGG 2 cut(s) 136, 516
BssAI RCCGGY 1 cut(s) 470
BssECI CCNNGG 2 cut(s) 556, 618
BssMI GATC 1 cut(s) 166
BssNI GRCGYC 2 cut(s) 468, 513
Bst2UI CCWGG 2 cut(s) 95, 558
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 2 cut(s) 333, 591
BstACI GRCGYC 2 cut(s) 468, 513
BstDEI CTNAG 2 cut(s) 246, 441
BstENI CCTNNNNNAGG 1 cut(s) 360
BstF5I GGATG 3 cut(s) 10, 76, 628
BstH2I RGCGCY 2 cut(s) 471, 516
BstHHI GCGC 2 cut(s) 470, 515
BstKTI GATC 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 3 cut(s) 474, 519, 561
BstNI CCWGG 2 cut(s) 95, 558
BstSCI CCNGG 2 cut(s) 93, 556
BstSLI GKGCMC 1 cut(s) 31
BstV1I GCAGC 2 cut(s) 637, 640
BstV2I GAAGAC 1 cut(s) 149
Bsu36I CCTNAGG 1 cut(s) 441
BsuRI GGCC 2 cut(s) 29, 555
BtsCI GGATG 3 cut(s) 10, 76, 628
BtsIMutI CAGTG 1 cut(s) 523
BveI ACCTGC 2 cut(s) 255, 685
CaiI CAGNNNCTG 1 cut(s) 653
CfoI GCGC 2 cut(s) 470, 515
Cfr10I RCCGGY 1 cut(s) 470
Cfr13I GGNCC 4 cut(s) 27, 28, 134, 554
CseI GACGC 1 cut(s) 704
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviAII CATG 7 cut(s) 415, 454, 460, 499, 505, 547, 692
DdeI CTNAG 2 cut(s) 246, 441
DinI GGCGCC 2 cut(s) 469, 514
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eam1104I CTCTTC 2 cut(s) 333, 591
EarI CTCTTC 2 cut(s) 333, 591
Eco24I GRGCYC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 123
Eco81I CCTNAGG 1 cut(s) 441
EcoNI CCTNNNNNAGG 1 cut(s) 360
EcoRII CCWGG 2 cut(s) 93, 556
EcoT38I GRGCYC 1 cut(s) 31
EgeI GGCGCC 2 cut(s) 469, 514
EheI GGCGCC 2 cut(s) 469, 514
FaeI CATG 7 cut(s) 418, 457, 463, 502, 508, 550, 695
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FatI CATG 7 cut(s) 414, 453, 459, 498, 504, 546, 691
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 2 cut(s) 651, 654
FokI GGATG 2 cut(s) 83, 635
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 2 cut(s) 651, 654
FspBI CTAG 1 cut(s) 204
GlaI GCGC 2 cut(s) 469, 514
GluI GCNGC 2 cut(s) 651, 654
GsuI CTGGAG 1 cut(s) 116
HaeII RGCGCY 2 cut(s) 471, 516
HaeIII GGCC 2 cut(s) 29, 555
HapII CCGG 3 cut(s) 68, 344, 471
HgaI GACGC 1 cut(s) 704
HhaI GCGC 2 cut(s) 470, 515
Hin1I GRCGYC 2 cut(s) 468, 513
Hin1II CATG 7 cut(s) 418, 457, 463, 502, 508, 550, 695
Hin6I GCGC 2 cut(s) 468, 513
HinP1I GCGC 2 cut(s) 468, 513
HincII GTYRAC 2 cut(s) 160, 634
HindII GTYRAC 2 cut(s) 160, 634
HindIII AAGCTT 1 cut(s) 86
HpaII CCGG 3 cut(s) 68, 344, 471
HphI GGTGA 2 cut(s) 617, 698
Hpy166II GTNNAC 3 cut(s) 49, 160, 634
Hpy188I TCNGA 2 cut(s) 40, 664
Hpy188III TCNNGA 3 cut(s) 440, 530, 572
Hpy8I GTNNAC 3 cut(s) 49, 160, 634
HpyAV CCTTC 2 cut(s) 98, 356
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 474, 519, 561
HpyF3I CTNAG 2 cut(s) 246, 441
Hsp92I GRCGYC 2 cut(s) 468, 513
Hsp92II CATG 7 cut(s) 418, 457, 463, 502, 508, 550, 695
HspAI GCGC 2 cut(s) 468, 513
KasI GGCGCC 2 cut(s) 467, 512
Kzo9I GATC 1 cut(s) 166
LguI GCTCTTC 1 cut(s) 333
LmnI GCTCC 3 cut(s) 97, 261, 295
Lsp1109I GCAGC 2 cut(s) 637, 640
LweI GCATC 4 cut(s) 61, 523, 565, 655
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 2 cut(s) 227, 611
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 4 cut(s) 154, 344, 350, 608
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 1 cut(s) 627
Mly113I GGCGCC 2 cut(s) 468, 513
MnlI CCTC 4 cut(s) 27, 241, 436, 613
MseI TTAA 2 cut(s) 60, 90
MslI CAYNNNNRTG 3 cut(s) 15, 458, 503
MspA1I CMGCKG 1 cut(s) 650
MspI CCGG 3 cut(s) 68, 344, 471
MspR9I CCNGG 2 cut(s) 95, 558
MvaI CCWGG 2 cut(s) 95, 558
MwoI GCNNNNNNNGC 3 cut(s) 474, 519, 561
NarI GGCGCC 2 cut(s) 468, 513
NdeII GATC 1 cut(s) 166
NlaIII CATG 7 cut(s) 418, 457, 463, 502, 508, 550, 695
NlaIV GGNNCC 4 cut(s) 29, 99, 469, 514
NmuCI GTSAC 1 cut(s) 611
PaqCI CACCTGC 1 cut(s) 685
PciSI GCTCTTC 1 cut(s) 333
PkrI GCNGC 2 cut(s) 652, 655
PluTI GGCGCC 2 cut(s) 471, 516
Psp6I CCWGG 2 cut(s) 93, 556
PspGI CCWGG 2 cut(s) 93, 556
PspN4I GGNNCC 4 cut(s) 29, 99, 469, 514
PspOMI GGGCCC 1 cut(s) 27
PspPI GGNCC 4 cut(s) 27, 28, 134, 554
PstNI CAGNNNCTG 1 cut(s) 653
PvuII CAGCTG 1 cut(s) 650
RseI CAYNNNNRTG 3 cut(s) 15, 458, 503
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 2 cut(s) 60, 90
SatI GCNGC 2 cut(s) 651, 654
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 4 cut(s) 27, 28, 134, 554
ScrFI CCNGG 2 cut(s) 95, 558
SduI GDGCHC 1 cut(s) 31
SfaNI GCATC 4 cut(s) 61, 523, 565, 655
SfoI GGCGCC 2 cut(s) 469, 514
SgrAI CRCCGGYG 1 cut(s) 470
SinI GGWCC 1 cut(s) 134
SmiMI CAYNNNNRTG 3 cut(s) 15, 458, 503
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 1 cut(s) 627
SsiI CCGC 1 cut(s) 426
SspDI GGCGCC 2 cut(s) 467, 512
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 2 cut(s) 93, 556
TaaI ACNGT 1 cut(s) 46
TasI AATT 1 cut(s) 627
Tru1I TTAA 2 cut(s) 60, 90
Tru9I TTAA 2 cut(s) 60, 90
TscAI CASTG 1 cut(s) 523
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 2 cut(s) 650, 653
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 8 cut(s) 168, 345, 351, 375, 470, 515, 609, 639
TspRI CASTG 1 cut(s) 523
VpaK11BI GGWCC 1 cut(s) 134
XagI CCTNNNNNAGG 1 cut(s) 360
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.