Rroxscaffold_7G00195260

CS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013609
Physical Location & Seq
Reverse (-)
37529564 .. 37532273
2710 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00195260.1

Sequence Viewer

Length: 474 bp
ATGAGCCGACATCCTATTGTCAAGTGGGCTCAGCGGCCTGATACGCTTTACATTACTATTGACTTGCCTGATGCCCAGGATGTAAAGCTCAAACTGGAGCCTGAAGGAAAGTTTCTATTCTCTGCTACCACTGGACCAGAAAAGACACCCTATGAAGTTGATCTTGATCTCTATGACAAAATTGATGTAAATATTGATAAAACAAGAAGGAAAACCCCTGTGTTCTTGAAAGTTGATTGGGATAAATGGGTAGATGAGGATGAGGAGGAAGGCCAAGGACTTGGAAATGACATGGACTTTGGCGACATGGATTTCTCTAAGCTGAATATGGGTGGTGGGGGCGATGGTCTTGATGAATTCGATGATAGCAGTGACACTGAAGACGAGACCACTCAAGCAGTACCATCTGCCTCTGCTGAATCTGATACCAAGCCTACTGCAAGTATGGAGCATGAAGCAAAACCTTCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko01100 map00590 map01100
Pfam Domains
Protein Families
CS

Protein Analysis

157

Amino Acids

17.55

Weight (kDa)

4.2

Isoelectric Point (pI)

30.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 7 - 64 6.5e-07 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013609)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12740 FvH4_2g12740
malus_domestica MD05G1037300.v1.1 MD10G1041200.v1.1
prunus_persica Prupe.8G045200_v2.0.a1 Prupe.8G045200_v2.0.a1
pyrus_communis pycom05g02760 pycom10g02830
rosa_chinensis RchiOBHm_Chr6g0273521
rosa_laevigata RLG00000013610
rosa_multiflora Rmu_sc0001419.1_g000004
rosa_roxburghii Rroxscaffold_7G00195260
rosa_rugosa Rorug06G0076000
rosa_samantha Rh6AG190700 Rh6CG193800 Rh6DG185600
rosa_wichuraiana Rw6G005270 Rw6G016690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 34
AcsI RAATTY 1 cut(s) 356
AcuI CTGAAG 3 cut(s) 123, 399, 450
AfaI GTAC 1 cut(s) 402
AgsI TTSAA 1 cut(s) 229
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 2 cut(s) 88, 322
AluI AGCT 2 cut(s) 88, 322
Alw26I GTCTC 1 cut(s) 380
AoxI GGCC 2 cut(s) 35, 271
ApoI RAATTY 1 cut(s) 356
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AspS9I GGNCC 1 cut(s) 134
AvaII GGWCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 387
BccI CCATC 2 cut(s) 338, 412
BciT130I CCWGG 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 380
BisI GCNGC 1 cut(s) 35
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 77
BmsI GCATC 1 cut(s) 61
BpiI GAAGAC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 116
Bpu1102I GCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 378
BsaBI GATNNNNATC 1 cut(s) 165
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 2 cut(s) 75, 274
Bse1I ACTGG 2 cut(s) 99, 136
Bse8I GATNNNNATC 1 cut(s) 165
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 2 cut(s) 75, 274
BseGI GGATG 3 cut(s) 10, 85, 265
BseJI GATNNNNATC 1 cut(s) 165
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 2 cut(s) 99, 136
BseRI GAGGAG 1 cut(s) 278
BshFI GGCC 2 cut(s) 37, 273
BsmAI GTCTC 1 cut(s) 380
BsnI GGCC 2 cut(s) 37, 273
Bso31I GGTCTC 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 2 cut(s) 160, 166
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 1 cut(s) 34
BspANI GGCC 2 cut(s) 37, 273
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 99
BspTNI GGTCTC 1 cut(s) 380
BsrI ACTGG 2 cut(s) 99, 136
BssECI CCNNGG 2 cut(s) 75, 274
BssMI GATC 2 cut(s) 160, 166
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 77
BstDEI CTNAG 2 cut(s) 30, 318
BstF5I GGATG 3 cut(s) 10, 85, 265
BstKTI GATC 2 cut(s) 163, 169
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 2 cut(s) 160, 166
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 387
BstXI CCANNNNNNTGG 1 cut(s) 281
BsuRI GGCC 2 cut(s) 37, 273
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 3 cut(s) 10, 85, 265
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 3 cut(s) 129, 375, 376
Cfr13I GGNCC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 401
CviAII CATG 3 cut(s) 292, 307, 452
CviJI RGCY 8 cut(s) 6, 29, 37, 88, 100, 273, 322, 433
CviKI_1 RGCY 8 cut(s) 6, 29, 37, 88, 100, 273, 322, 433
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 2 cut(s) 30, 318
DpnI GATC 2 cut(s) 162, 168
DpnII GATC 2 cut(s) 160, 166
Eco130I CCWWGG 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 31
Eco31I GGTCTC 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 134
Eco57I CTGAAG 3 cut(s) 123, 399, 450
EcoRI GAATTC 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 3 cut(s) 295, 310, 455
FaiI YATR 7 cut(s) 153, 174, 293, 308, 329, 446, 453
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FatI CATG 3 cut(s) 291, 306, 451
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 2 cut(s) 92, 272
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 35
GsuI CTGGAG 1 cut(s) 116
HaeIII GGCC 2 cut(s) 37, 273
Hin1II CATG 3 cut(s) 295, 310, 455
HinfI GANTC 1 cut(s) 419
Hpy188I TCNGA 2 cut(s) 424, 473
Hpy188III TCNNGA 3 cut(s) 164, 226, 350
HpyAV CCTTC 4 cut(s) 98, 201, 263, 474
HpyCH4V TGCA 1 cut(s) 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 2 cut(s) 30, 318
Hsp92II CATG 3 cut(s) 295, 310, 455
Kzo9I GATC 2 cut(s) 160, 166
LmnI GCTCC 2 cut(s) 97, 448
LpnPI CCDG 9 cut(s) 51, 62, 80, 81, 89, 114, 117, 150, 231
LweI GCATC 1 cut(s) 61
MaeIII GTNAC 1 cut(s) 371
MalI GATC 2 cut(s) 162, 168
MboI GATC 2 cut(s) 160, 166
MboII GAAGA 1 cut(s) 392
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 2 cut(s) 180, 356
MnlI CCTC 4 cut(s) 250, 256, 259, 421
MspA1I CMGCKG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 77
MvaI CCWGG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 43
NdeII GATC 2 cut(s) 160, 166
NlaIII CATG 3 cut(s) 295, 310, 455
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 371
PfeI GAWTC 1 cut(s) 419
PkrI GCNGC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 1 cut(s) 134
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 2 cut(s) 160, 166
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 1 cut(s) 31
SetI ASST 3 cut(s) 90, 324, 466
SfaNI GCATC 1 cut(s) 61
SinI GGWCC 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 393
SmoI CTYRAG 1 cut(s) 393
Sse9I AATT 2 cut(s) 180, 356
SsiI CCGC 1 cut(s) 34
SspI AATATT 1 cut(s) 193
StyD4I CCNGG 1 cut(s) 75
StyI CCWWGG 1 cut(s) 274
TaqI TCGA 1 cut(s) 360
TasI AATT 2 cut(s) 180, 356
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 1 cut(s) 419
TscAI CASTG 3 cut(s) 136, 376, 382
TseFI GTSAC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 3 cut(s) 168, 369, 468
TspRI CASTG 3 cut(s) 136, 376, 382
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.