Rorug06G0076000

CS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013609
Physical Location & Seq
Reverse (-)
10082463 .. 10083385
923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0076000.1

Sequence Viewer

Length: 894 bp
ATGACAAAAAACAAATTAGCTCCTTTTCTTACTCTAGATGGTGAGTCAGAACTCATCAAGTTGGTCAAAGCATCCAGAGAGGCCGAGGAAAGGAGCTACGGGATTATTGTAAACTGCTACTATGAACTTGAAGCTGATTATGTAGATCACTATAGGAAGGCGCTGGGGAAGAAGTCATGGCATATTGGCCCAGTTTCTTTATGCGAAACAGAAAAAGATAAAGCAGAGAGGGGAAGGGAAGGCTCAGTTGATGAAGTACATGAGTGCTTGAACTGGCTTAATTCTAAGAAAGCCAATTCTGTAGTTTATATATGTTTTGGAAGCCTGACCAATTTTGGTGATTGTCAGCTCTTAGAAATTGCCTTGGCTCTTCAAGCTTCTAGACAGCAATTCATTTGGGTTGTGAAGACAGAAAAGAATGATAAAGAAGAGTGGTTGCCTGAAGAATTTGAGCAGAGAGTGGAAGGAAAGGGATTGATTATAAGAGGTTGGGCTCCCCAACTACTGATTCTACAACATGAAGCAGTTGGGGCCTTTTTCACTCATTGTGGGTGGAACTCAACCCTTGAAGGAGTGTGTGCTGGGGTGCCAATGATCACGTGGCCAGTAAACGCAGATCAGTTTTACAATGAGAAGTTGGTGACTGAGATACTTGGGATTGGAGTTGCTATTGGTGTTCAAAAGTGGGAGCATGTTAGTGTGAAAAGCAAAGCCAGTGTGAAGGAGACCATAGAGAAGGCTTTGACTGGATTCATGGTCGGTGATGAAAAAGAGGAAATCAGAAGCAAAGTTCTTGTGCTCAGAGAGCTCGCAAGGAGGGCAGTTGAAGATGGTGGTTCATCGTTCTCGGATTTAACTGCTCTAATTGAAGAGTTGAAGTCTCTCGGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko01100 map00590 map01100
Pfam Domains
Protein Families
CS

Protein Analysis

297

Amino Acids

33.34

Weight (kDa)

5.29

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 88 - 226 6e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013609)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12740 FvH4_2g12740
malus_domestica MD05G1037300.v1.1 MD10G1041200.v1.1
prunus_persica Prupe.8G045200_v2.0.a1 Prupe.8G045200_v2.0.a1
pyrus_communis pycom05g02760 pycom10g02830
rosa_chinensis RchiOBHm_Chr6g0273521
rosa_laevigata RLG00000013610
rosa_multiflora Rmu_sc0001419.1_g000004
rosa_roxburghii Rroxscaffold_7G00195260
rosa_rugosa Rorug06G0076000
rosa_samantha Rh6AG190700 Rh6CG193800 Rh6DG185600
rosa_wichuraiana Rw6G005270 Rw6G016690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 482
AccB1I GGYRCC 1 cut(s) 586
AcoI YGGCCR 1 cut(s) 602
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 462
AcvI CACGTG 1 cut(s) 600
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 8 cut(s) 131, 271, 374, 569, 680, 827, 869, 877
AjuI GAANNNNNNNTTGG 2 cut(s) 492, 524
AluBI AGCT 6 cut(s) 20, 96, 134, 349, 377, 808
AluI AGCT 6 cut(s) 20, 96, 134, 349, 377, 808
Alw21I GWGCWC 2 cut(s) 801, 810
Alw26I GTCTC 2 cut(s) 719, 885
Ama87I CYCGRG 1 cut(s) 884
AoxI GGCC 4 cut(s) 81, 187, 531, 602
ApoI RAATTY 1 cut(s) 446
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 2 cut(s) 188, 531
AsuHPI GGTGA 4 cut(s) 53, 350, 652, 773
AvaI CYCGRG 1 cut(s) 884
BalI TGGCCA 1 cut(s) 604
BanI GGYRCC 1 cut(s) 586
BanII GRGCYC 2 cut(s) 496, 810
BbrPI CACGTG 1 cut(s) 600
BbsI GAAGAC 1 cut(s) 413
Bbv12I GWGCWC 2 cut(s) 801, 810
BccI CCATC 2 cut(s) 32, 824
BclI TGATCA 1 cut(s) 594
BcoDI GTCTC 2 cut(s) 719, 885
BfaI CTAG 2 cut(s) 35, 381
BfmI CTRYAG 2 cut(s) 151, 300
BfoI RGCGCY 1 cut(s) 164
BmeT110I CYCGRG 1 cut(s) 884
BmgT120I GGNCC 2 cut(s) 188, 531
BmiI GGNNCC 3 cut(s) 495, 532, 588
BmrI ACTGGG 1 cut(s) 185
BmsI GCATC 1 cut(s) 80
BmuI ACTGGG 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 413
BsaAI YACGTR 1 cut(s) 600
BsaI GGTCTC 1 cut(s) 719
BsaJI CCNNGG 2 cut(s) 84, 363
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse1I ACTGG 5 cut(s) 191, 278, 605, 714, 751
BseDI CCNNGG 2 cut(s) 84, 363
BseGI GGATG 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMII CTCAG 3 cut(s) 258, 636, 814
BseNI ACTGG 5 cut(s) 191, 278, 605, 714, 751
BseYI CCCAGC 2 cut(s) 163, 581
BshFI GGCC 4 cut(s) 83, 189, 533, 604
BshNI GGYRCC 1 cut(s) 586
BsiHKAI GWGCWC 2 cut(s) 801, 810
BsiHKCI CYCGRG 1 cut(s) 884
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 2 cut(s) 719, 885
BsnI GGCC 4 cut(s) 83, 189, 533, 604
Bso31I GGTCTC 1 cut(s) 719
BsoBI CYCGRG 1 cut(s) 884
Bsp1286I GDGCHC 3 cut(s) 496, 801, 810
Bsp143I GATC 3 cut(s) 145, 594, 616
BspANI GGCC 4 cut(s) 83, 189, 533, 604
BspCNI CTCAG 3 cut(s) 257, 637, 813
BspLI GGNNCC 3 cut(s) 495, 532, 588
BspQI GCTCTTC 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 586
BspTNI GGTCTC 1 cut(s) 719
BsrI ACTGG 5 cut(s) 191, 278, 605, 714, 751
BssECI CCNNGG 2 cut(s) 84, 363
BssMI GATC 3 cut(s) 145, 594, 616
BssT1I CCWWGG 1 cut(s) 363
Bst6I CTCTTC 3 cut(s) 375, 423, 864
BstBAI YACGTR 1 cut(s) 600
BstC8I GCNNGC 1 cut(s) 810
BstDEI CTNAG 5 cut(s) 244, 285, 352, 645, 800
BstF5I GGATG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 3 cut(s) 148, 597, 619
BstMAI GTCTC 2 cut(s) 719, 885
BstMBI GATC 3 cut(s) 145, 594, 616
BstMWI GCNNNNNNNGC 4 cut(s) 374, 530, 805, 818
BstNSI RCATGY 1 cut(s) 695
BstSFI CTRYAG 2 cut(s) 151, 300
BstV2I GAAGAC 1 cut(s) 413
BsuRI GGCC 4 cut(s) 83, 189, 533, 604
BtsCI GGATG 1 cut(s) 71
BtsIMutI CAGTG 1 cut(s) 721
Cac8I GCNNGC 1 cut(s) 810
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 188, 531
Csp6I GTAC 1 cut(s) 257
CviAII CATG 5 cut(s) 177, 260, 518, 692, 754
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 5 cut(s) 244, 285, 352, 645, 800
DpnI GATC 3 cut(s) 147, 596, 618
DpnII GATC 3 cut(s) 145, 594, 616
EaeI YGGCCR 1 cut(s) 602
Eam1104I CTCTTC 3 cut(s) 375, 423, 864
EarI CTCTTC 3 cut(s) 375, 423, 864
Ecl136II GAGCTC 1 cut(s) 808
Eco130I CCWWGG 1 cut(s) 363
Eco24I GRGCYC 2 cut(s) 496, 810
Eco31I GGTCTC 1 cut(s) 719
Eco53kI GAGCTC 1 cut(s) 808
Eco57I CTGAAG 1 cut(s) 462
Eco72I CACGTG 1 cut(s) 600
Eco88I CYCGRG 1 cut(s) 884
EcoICRI GAGCTC 1 cut(s) 808
EcoO109I RGGNCCY 1 cut(s) 531
EcoT14I CCWWGG 1 cut(s) 363
EcoT38I GRGCYC 2 cut(s) 496, 810
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 5 cut(s) 180, 263, 521, 695, 757
FatI CATG 5 cut(s) 176, 259, 517, 691, 753
FbaI TGATCA 1 cut(s) 594
FokI GGATG 1 cut(s) 58
FriOI GRGCYC 2 cut(s) 496, 810
FspBI CTAG 2 cut(s) 35, 381
GlaI GCGC 1 cut(s) 162
GsaI CCCAGC 2 cut(s) 167, 585
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 4 cut(s) 83, 189, 533, 604
HhaI GCGC 1 cut(s) 163
Hin1II CATG 5 cut(s) 180, 263, 521, 695, 757
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HindIII AAGCTT 1 cut(s) 375
HinfI GANTC 3 cut(s) 44, 508, 750
HphI GGTGA 4 cut(s) 53, 350, 652, 773
Hpy166II GTNNAC 2 cut(s) 112, 610
Hpy188I TCNGA 4 cut(s) 49, 782, 803, 850
Hpy188III TCNNGA 4 cut(s) 35, 75, 381, 891
Hpy8I GTNNAC 2 cut(s) 112, 610
HpyAV CCTTC 7 cut(s) 151, 228, 233, 458, 563, 715, 730
HpyCH4IV ACGT 1 cut(s) 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 374, 530, 805, 818
HpyF3I CTNAG 5 cut(s) 244, 285, 352, 645, 800
HpySE526I ACGT 1 cut(s) 599
Hsp92II CATG 5 cut(s) 180, 263, 521, 695, 757
HspAI GCGC 1 cut(s) 161
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 3 cut(s) 145, 594, 616
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 4 cut(s) 25, 93, 499, 688
LweI GCATC 1 cut(s) 80
MaeI CTAG 2 cut(s) 35, 381
MaeII ACGT 1 cut(s) 599
MaeIII GTNAC 1 cut(s) 640
MalI GATC 3 cut(s) 147, 596, 618
MboI GATC 3 cut(s) 145, 594, 616
MboII GAAGA 7 cut(s) 181, 362, 418, 440, 455, 839, 881
MhlI GDGCHC 3 cut(s) 496, 801, 810
MlsI TGGCCA 1 cut(s) 604
MluCI AATT 8 cut(s) 14, 280, 295, 331, 357, 389, 446, 864
MluNI TGGCCA 1 cut(s) 604
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 6 cut(s) 73, 79, 222, 479, 766, 810
Mox20I TGGCCA 1 cut(s) 604
MscI TGGCCA 1 cut(s) 604
MseI TTAA 2 cut(s) 279, 854
MslI CAYNNNNRTG 1 cut(s) 696
Msp20I TGGCCA 1 cut(s) 604
MwoI GCNNNNNNNGC 4 cut(s) 374, 530, 805, 818
NdeII GATC 3 cut(s) 145, 594, 616
NlaIII CATG 5 cut(s) 180, 263, 521, 695, 757
NlaIV GGNNCC 3 cut(s) 495, 532, 588
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 640
NspI RCATGY 1 cut(s) 695
PciSI GCTCTTC 1 cut(s) 375
PfeI GAWTC 2 cut(s) 508, 750
PleI GAGTC 1 cut(s) 52
PmaCI CACGTG 1 cut(s) 600
PmlI CACGTG 1 cut(s) 600
PpsI GAGTC 1 cut(s) 52
Ppu21I YACGTR 1 cut(s) 600
PsiI TTATAA 1 cut(s) 482
Psp124BI GAGCTC 1 cut(s) 810
PspCI CACGTG 1 cut(s) 600
PspFI CCCAGC 2 cut(s) 163, 581
PspN4I GGNNCC 3 cut(s) 495, 532, 588
PspPI GGNCC 2 cut(s) 188, 531
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 696
SacI GAGCTC 1 cut(s) 810
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 2 cut(s) 279, 854
Sau3AI GATC 3 cut(s) 145, 594, 616
Sau96I GGNCC 2 cut(s) 188, 531
SchI GAGTC 1 cut(s) 53
SduI GDGCHC 3 cut(s) 496, 801, 810
SetI ASST 8 cut(s) 22, 98, 136, 351, 379, 490, 602, 810
SfaNI GCATC 1 cut(s) 80
SfcI CTRYAG 2 cut(s) 151, 300
SmiMI CAYNNNNRTG 1 cut(s) 696
Sse9I AATT 8 cut(s) 14, 280, 295, 331, 357, 389, 446, 864
SspMI CTAG 2 cut(s) 35, 381
SstI GAGCTC 1 cut(s) 810
StyI CCWWGG 1 cut(s) 363
TaiI ACGT 1 cut(s) 602
TasI AATT 8 cut(s) 14, 280, 295, 331, 357, 389, 446, 864
TatI WGTACW 1 cut(s) 256
TfiI GAWTC 2 cut(s) 508, 750
Tru1I TTAA 2 cut(s) 279, 854
Tru9I TTAA 2 cut(s) 279, 854
TscAI CASTG 1 cut(s) 721
TseFI GTSAC 1 cut(s) 640
Tsp45I GTSAC 1 cut(s) 640
TspDTI ATGAA 7 cut(s) 138, 267, 382, 534, 742, 780, 828
TspRI CASTG 1 cut(s) 721
XapI RAATTY 1 cut(s) 446
XbaI TCTAGA 2 cut(s) 34, 380
XceI RCATGY 1 cut(s) 695
XcmI CCANNNNNNNNNTGG 1 cut(s) 597
XspI CTAG 2 cut(s) 35, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.