Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004572

Physical Location & Seq

Genomic Coordinates Forward (+)

11650259 .. 11652613

Gene Structure 2355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13350.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAGATGAATTTCGATGCAATGAAGAGGAATCAACTAAAACTACTGTGTAAAAAGCATGAAATTCCTGCAAATATAACGAACATAGAAATGGCCAAGAGGCTTACTTTGCTTCACAAGGTTCAGATACAAAAGGTGAAGAAAGTAAGCTTCAATCCTGAGACACACATATTTTTCTTTGAGGCTACGCCCAAATATACATACTCCAGTTTAAAGAAGAAAAGGGTGCAAAAGAGGAAGTCCAGGGTGAAGCAAGCTTCAAAGAAGAAGCAGGTTCAGCTTGCTGAAATTGGCAGAGAACTTGAACTCTCGGTGAACATAACTGCTACCCCAGTTAGACTTACAAGATCTAGTGCACAAAGAATAGAACAAGGCAATGCAGAAGCAATGTCTTTGCCATTTTCTGTGCGGAAGAACGTCAGAAGTGTTGTGGAAAATGTAGGTGGTAATAAGCCGCCTCTGGAGGTTAAGTTGAGTGAGGGAGTTGGTGGTGATGATGGAGATGCAATTTCGGGTGGAGTATTAATTTATAAAAAACTGAGGAGCAGAATTGTGGTGTGTAAATATGGTGGAGGTTCAATGGTTTTGAGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.28

Weight (kDa)

10.29

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76740
fragaria_vesca	FvH4_2g13350 FvH4_2g13350
malus_domestica	MD05G1029500.v1.1
prunus_persica	Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1
pyrus_communis	pycom05g02080
rosa_chinensis	RchiOBHm_Chr6g0274831
rosa_laevigata	RLG00000013518
rosa_multiflora	Rmu_sc0008611.1_g000008
rosa_roxburghii	Rroxscaffold_7G00193900
rosa_rugosa	Rorug06G0085100
rosa_samantha	Rh6AG200700 Rh6BG204100 Rh6CG204400 Rh6DG195600
rosa_wichuraiana	Rw6G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	531
Acc36I	ACCTGC	1 cut(s)	262
AciI	CCGC	2 cut(s)	409, 455
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	2 cut(s)	10, 63
AgsI	TTSAA	4 cut(s)	154, 261, 305, 579
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	3 cut(s)	150, 257, 280
AluI	AGCT	3 cut(s)	150, 257, 280
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	155
Alw44I	GTGCAC	1 cut(s)	354
AoxI	GGCC	1 cut(s)	93
ApaLI	GTGCAC	1 cut(s)	354
ApoI	RAATTY	2 cut(s)	10, 63
AseI	ATTAAT	1 cut(s)	524
AsuHPI	GGTGA	4 cut(s)	148, 259, 325, 503
BaeGI	GKGCMC	1 cut(s)	358
BalI	TGGCCA	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	358
BccI	CCATC	1 cut(s)	491
BciT130I	CCWGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	262
BglII	AGATCT	1 cut(s)	347
BisI	GCNGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	456
Bme1390I	CCNGG	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	244
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	2 cut(s)	7, 493
BmuI	ACTGGG	1 cut(s)	326
BpmI	CTGGAG	2 cut(s)	190, 482
BsaJI	CCNNGG	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bse1I	ACTGG	2 cut(s)	207, 332
Bse3DI	GCAATG	3 cut(s)	27, 382, 393
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	243
BseMI	GCAATG	3 cut(s)	27, 382, 393
BseMII	CTCAG	2 cut(s)	150, 530
BseNI	ACTGG	2 cut(s)	207, 332
BseRI	GAGGAG	1 cut(s)	556
BseSI	GKGCMC	1 cut(s)	358
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	1 cut(s)	347
BspACI	CCGC	2 cut(s)	409, 455
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	151, 531
BspMI	ACCTGC	1 cut(s)	262
BsrDI	GCAATG	3 cut(s)	27, 382, 393
BsrI	ACTGG	2 cut(s)	207, 332
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	255, 282
BstDEI	CTNAG	2 cut(s)	159, 539
BstKTI	GATC	1 cut(s)	350
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	347
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 277
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	242
BstSLI	GKGCMC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	95
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	255, 282
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	7 cut(s)	95, 103, 150, 185, 257, 280, 454
CviKI_1	RGCY	7 cut(s)	95, 103, 150, 185, 257, 280, 454
DdeI	CTNAG	2 cut(s)	159, 539
DpnI	GATC	1 cut(s)	349
DpnII	GATC	1 cut(s)	347
DraI	TTTAAA	1 cut(s)	213
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	242
FaeI	CATG	1 cut(s)	62
FaiI	YATR	9 cut(s)	60, 77, 86, 170, 198, 202, 320, 531, 567
FatI	CATG	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	455
Fsp4HI	GCNGC	1 cut(s)	455
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	1 cut(s)	455
GsuI	CTGGAG	2 cut(s)	190, 482
HaeIII	GGCC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	62
HindIII	AAGCTT	2 cut(s)	148, 255
HinfI	GANTC	1 cut(s)	31
HphI	GGTGA	4 cut(s)	148, 259, 325, 503
Hpy166II	GTNNAC	2 cut(s)	316, 356
Hpy188I	TCNGA	2 cut(s)	126, 422
Hpy188III	TCNNGA	2 cut(s)	158, 461
Hpy8I	GTNNAC	2 cut(s)	316, 356
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	6 cut(s)	20, 71, 229, 356, 380, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 277
HpyF3I	CTNAG	2 cut(s)	159, 539
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	347
LmnI	GCTCC	1 cut(s)	543
LpnPI	CCDG	8 cut(s)	81, 171, 220, 229, 256, 257, 345, 446
LweI	GCATC	2 cut(s)	7, 493
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	417
MalI	GATC	1 cut(s)	349
MboI	GATC	1 cut(s)	347
MboII	GAAGA	5 cut(s)	37, 151, 229, 277, 424
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	358
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	6 cut(s)	10, 63, 288, 507, 525, 549
MluNI	TGGCCA	1 cut(s)	95
Mox20I	TGGCCA	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	3 cut(s)	212, 468, 524
MslI	CAYNNNNRTG	1 cut(s)	89
Msp20I	TGGCCA	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	2 cut(s)	109, 277
NdeII	GATC	1 cut(s)	347
NlaIII	CATG	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	456
PshBI	ATTAAT	1 cut(s)	524
PsiI	TTATAA	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	212, 468, 524
SatI	GCNGC	1 cut(s)	455
Sau3AI	GATC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	358
SfaNI	GCATC	2 cut(s)	7, 493
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	6 cut(s)	10, 63, 288, 507, 525, 549
SsiI	CCGC	2 cut(s)	409, 455
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	1 cut(s)	15
TasI	AATT	6 cut(s)	10, 63, 288, 507, 525, 549
TauI	GCSGC	1 cut(s)	457
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	3 cut(s)	212, 468, 524
Tru9I	TTAA	3 cut(s)	212, 468, 524
TspDTI	ATGAA	3 cut(s)	23, 38, 75
VneI	GTGCAC	1 cut(s)	354
VspI	ATTAAT	1 cut(s)	524
XapI	RAATTY	2 cut(s)	10, 63
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.