Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Forward (+)

11321639 .. 11328460

Gene Structure 6822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0085100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGATTCGTTCTGGAGCCACAATGCCGCCCCAGACTCGTCGCATTTCCTCGTCGCCATCTACTTCGCCGTTGGATTCTTCTTCGCTAGGCTCTTCCTTGATAGAGTCATCTTCACCAGGCTTGCCATCTGGTTGTTGGGTAAAGGTTCTGCTCCATTGAAAAAGATTGATATGGTCCAACGGGCAAAGATTGTAAAATGCTCAGAGTCAATGTGGAAGTTAACATACTATACAGCCGTTGAAGCTTGCATTCTCAGTATAAGCTACCACGAGCCATGGTTCACAGATACAGCAGAGTACTTCAAAGGCTGGCCAAACCAAGAGTTGGGGCTTCCCCTAAAGCTTGTCTATATGTGTCAATGTGGATTCTACACCTACAGCATTGTTGCTCTCCTTACATGGGAGACTCGAAGGAAGGATTTTTCAGTGATGATGTCTCATCATGTAATTACCGTCTTCCTGATTGGATGCTCATACGTTACAAGCTTTTTCCGGATTGGCTCAATCATTCTTGCCCTGCATGATGGGAGTGATGTATTCATGGAAGCTGCCAAGGTCTTCAAATATTCCGAGAAGGAGCTTGCAGCAAGTGTGTTCTTTGGATGTTTTGCTGTTTCATGGCTCATACTGCGGTTAATATACTTCCCCTTTTGGGTCATAAGCTCAACAAGCTATGACCTTCTTAAGCACTTGGATTTGTCAAAGTCCTCTCATATAACACTGTACTATGTGTTCAATACGTTGTTACTGACGCTGCTTGTGTTCCACATATACTGGTGGGTTATGATATACTCAATGATTAGGAGACAACTGAATAATAGAGGAAAAGTTGGAGAAGATATAAGATCAGATTCAGACGATGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

289

Amino Acids

33.66

Weight (kDa)

7.64

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	66 - 263	9.7e-49	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccIII	TCCGGA	1 cut(s)	492
AciI	CCGC	2 cut(s)	27, 631
AcoI	YGGCCR	1 cut(s)	311
AfaI	GTAC	2 cut(s)	299, 725
AfiI	CCNNNNNNNGG	3 cut(s)	325, 400, 652
AflII	CTTAAG	1 cut(s)	683
AgsI	TTSAA	5 cut(s)	160, 242, 304, 562, 736
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	8 cut(s)	245, 264, 343, 486, 548, 580, 663, 672
AluI	AGCT	8 cut(s)	245, 264, 343, 486, 548, 580, 663, 672
Alw26I	GTCTC	3 cut(s)	398, 441, 799
Aor13HI	TCCGGA	1 cut(s)	492
AoxI	GGCC	1 cut(s)	311
ApeKI	GCWGC	3 cut(s)	548, 584, 754
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	313
BarI	GAAGNNNNNNTAC	2 cut(s)	209, 241
BauI	CACGAG	1 cut(s)	269
BbsI	GAAGAC	2 cut(s)	448, 550
BbvI	GCAGC	3 cut(s)	535, 596, 741
BccI	CCATC	3 cut(s)	65, 134, 518
BceAI	ACGGC	2 cut(s)	53, 221
BciT130I	CCWGG	1 cut(s)	118
BcoDI	GTCTC	3 cut(s)	398, 441, 799
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	376
BfrI	CTTAAG	1 cut(s)	683
BisI	GCNGC	4 cut(s)	27, 549, 585, 755
BlsI	GCNGC	4 cut(s)	28, 550, 586, 756
BmcAI	AGTACT	1 cut(s)	299
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	1 cut(s)	458
BpiI	GAAGAC	2 cut(s)	448, 550
BpmI	CTGGAG	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	275, 552
BsaWI	WCCGGW	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	3 cut(s)	325, 400, 652
Bse1I	ACTGG	1 cut(s)	779
BseAI	TCCGGA	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	275, 552
BseGI	GGATG	2 cut(s)	473, 608
BseLI	CCNNNNNNNGG	3 cut(s)	325, 400, 652
BseMII	CTCAG	2 cut(s)	216, 268
BseNI	ACTGG	1 cut(s)	779
BseXI	GCAGC	3 cut(s)	535, 596, 741
BshFI	GGCC	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	493
BslI	CCNNNNNNNGG	3 cut(s)	325, 400, 652
BsmAI	GTCTC	3 cut(s)	398, 441, 799
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	313
Bsp13I	TCCGGA	1 cut(s)	492
Bsp143I	GATC	1 cut(s)	845
Bsp19I	CCATGG	1 cut(s)	275
BspACI	CCGC	2 cut(s)	27, 631
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	2 cut(s)	215, 267
BspEI	TCCGGA	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	17
BspQI	GCTCTTC	1 cut(s)	98
BspTI	CTTAAG	1 cut(s)	683
BsrI	ACTGG	1 cut(s)	779
BssECI	CCNNGG	2 cut(s)	275, 552
BssMI	GATC	1 cut(s)	845
BssSI	CACGAG	1 cut(s)	269
BssT1I	CCWWGG	2 cut(s)	275, 552
Bst2BI	CACGAG	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	454, 723
Bst6I	CTCTTC	1 cut(s)	98
BstAFI	CTTAAG	1 cut(s)	683
BstC8I	GCNNGC	4 cut(s)	123, 247, 311, 582
BstDEI	CTNAG	2 cut(s)	202, 254
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	2 cut(s)	473, 608
BstKTI	GATC	1 cut(s)	848
BstMAI	GTCTC	3 cut(s)	398, 441, 799
BstMBI	GATC	1 cut(s)	845
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 628, 669
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	376
BstV1I	GCAGC	3 cut(s)	535, 596, 741
BstV2I	GAAGAC	2 cut(s)	448, 550
BsuRI	GGCC	1 cut(s)	313
BtgI	CCRYGG	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	473, 608
BtsIMutI	CAGTG	2 cut(s)	432, 719
Cac8I	GCNNGC	4 cut(s)	123, 247, 311, 582
Cfr13I	GGNCC	1 cut(s)	175
CseI	GACGC	1 cut(s)	760
Csp6I	GTAC	2 cut(s)	298, 724
CviAII	CATG	6 cut(s)	276, 399, 443, 521, 541, 618
CviQI	GTAC	2 cut(s)	298, 724
DdeI	CTNAG	2 cut(s)	202, 254
DpnI	GATC	1 cut(s)	847
DpnII	GATC	1 cut(s)	845
EaeI	YGGCCR	1 cut(s)	311
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	2 cut(s)	275, 552
Eco47I	GGWCC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	116
EcoT14I	CCWWGG	2 cut(s)	275, 552
ErhI	CCWWGG	2 cut(s)	275, 552
FaeI	CATG	6 cut(s)	279, 402, 446, 524, 544, 621
FatI	CATG	6 cut(s)	275, 398, 442, 520, 540, 617
Fnu4HI	GCNGC	4 cut(s)	27, 549, 585, 755
FokI	GGATG	2 cut(s)	480, 615
Fsp4HI	GCNGC	4 cut(s)	27, 549, 585, 755
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	4 cut(s)	27, 549, 585, 755
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	1 cut(s)	493
HgaI	GACGC	1 cut(s)	760
Hin1II	CATG	6 cut(s)	279, 402, 446, 524, 544, 621
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	3 cut(s)	243, 341, 484
HinfI	GANTC	8 cut(s)	5, 35, 75, 105, 206, 366, 406, 851
HpaI	GTTAAC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	493
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	222, 282
Hpy188I	TCNGA	4 cut(s)	205, 571, 850, 856
Hpy188III	TCNNGA	3 cut(s)	13, 460, 493
Hpy8I	GTNNAC	2 cut(s)	222, 282
Hpy99I	CGWCG	2 cut(s)	43, 56
HpyAV	CCTTC	4 cut(s)	405, 409, 568, 689
HpyCH4III	ACNGT	2 cut(s)	454, 723
HpyCH4IV	ACGT	2 cut(s)	477, 740
HpyCH4V	TGCA	3 cut(s)	249, 520, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 628, 669
HpyF3I	CTNAG	2 cut(s)	202, 254
HpySE526I	ACGT	2 cut(s)	477, 740
Hsp92II	CATG	6 cut(s)	279, 402, 446, 524, 544, 621
Kpn2I	TCCGGA	1 cut(s)	492
KspAI	GTTAAC	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	845
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	3 cut(s)	15, 157, 577
LpnPI	CCDG	9 cut(s)	45, 103, 115, 130, 295, 473, 506, 530, 760
Lsp1109I	GCAGC	3 cut(s)	535, 596, 741
LweI	GCATC	1 cut(s)	458
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	2 cut(s)	477, 740
MaeIII	GTNAC	2 cut(s)	478, 744
MalI	GATC	1 cut(s)	847
MboI	GATC	1 cut(s)	845
MboII	GAAGA	7 cut(s)	70, 73, 85, 103, 448, 550, 848
MlsI	TGGCCA	1 cut(s)	313
MluCI	AATT	1 cut(s)	447
MluNI	TGGCCA	1 cut(s)	313
MlyI	GAGTC	4 cut(s)	29, 114, 215, 400
MmeI	TCCRAC	3 cut(s)	52, 202, 811
MnlI	CCTC	3 cut(s)	59, 718, 815
Mox20I	TGGCCA	1 cut(s)	313
MroI	TCCGGA	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	313
MseI	TTAA	3 cut(s)	221, 635, 684
Msp20I	TGGCCA	1 cut(s)	313
MspCI	CTTAAG	1 cut(s)	683
MspI	CCGG	1 cut(s)	493
MspR9I	CCNGG	1 cut(s)	118
Mva1269I	GAATGC	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	3 cut(s)	242, 628, 669
NcoI	CCATGG	1 cut(s)	275
NdeII	GATC	1 cut(s)	845
NlaIII	CATG	6 cut(s)	279, 402, 446, 524, 544, 621
NlaIV	GGNNCC	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	98
PctI	GAATGC	1 cut(s)	249
PfeI	GAWTC	4 cut(s)	5, 75, 366, 851
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	4 cut(s)	28, 550, 586, 756
PleI	GAGTC	4 cut(s)	29, 113, 214, 400
PpsI	GAGTC	4 cut(s)	29, 113, 214, 400
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	175
PsrI	GAACNNNNNNTAC	2 cut(s)	716, 748
RsaI	GTAC	2 cut(s)	299, 725
RsaNI	GTAC	2 cut(s)	298, 724
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	221, 635, 684
SatI	GCNGC	4 cut(s)	27, 549, 585, 755
Sau3AI	GATC	1 cut(s)	845
Sau96I	GGNCC	1 cut(s)	175
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	4 cut(s)	29, 114, 215, 400
ScrFI	CCNGG	1 cut(s)	118
SfaNI	GCATC	1 cut(s)	458
SfcI	CTRYAG	1 cut(s)	376
SinI	GGWCC	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	1 cut(s)	447
SsiI	CCGC	2 cut(s)	27, 631
SspI	AATATT	1 cut(s)	566
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	2 cut(s)	275, 552
TaaI	ACNGT	2 cut(s)	454, 723
TaiI	ACGT	2 cut(s)	480, 743
TaqI	TCGA	1 cut(s)	409
TasI	AATT	1 cut(s)	447
TatI	WGTACW	2 cut(s)	297, 723
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	4 cut(s)	5, 75, 366, 851
Tru1I	TTAA	3 cut(s)	221, 635, 684
Tru9I	TTAA	3 cut(s)	221, 635, 684
TscAI	CASTG	2 cut(s)	432, 726
TseI	GCWGC	3 cut(s)	548, 584, 754
TspDTI	ATGAA	2 cut(s)	529, 606
TspRI	CASTG	2 cut(s)	432, 726
Van91I	CCANNNNNTGG	1 cut(s)	325
Vha464I	CTTAAG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XspI	CTAG	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.