Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Reverse (-)

8956145 .. 8956657

Gene Structure 513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTGCACTCTTGAGTTACTTAGCAACCACAAAATCAACTCCTTCAAGTCAGTGAGGAAAGAAGAGGTCACCCTCATGGTGGATTCTATTCGACAGTCTGCAGCCAAGGGACAACGTGTTTCAGTTGATCTTAGCTCCAAGGTGTCGTCGCTTAGCGCAGACATGACTTGCAGGATGGTGTTTGGGAAGAAATACATGGATGATAAATTTAGTGAGAGGGGTTTCAAGTCTATGATTCTAGAAGGCTTGCAATTAGGAGCTGCCCCTAACTTGGGAGATTACATTCCTTGGATTGCTCCACTTGATCTCCAAGGATTCACTAAAAGAATGAAGGCTGTTCACAAGGTCTTTGACGACAGCTTTTTGGATAAGATTGTTGAGGAGCATCTCCAATCTAGAGATCGTGAAGAAAGAACAAAGGACTTTGTTGTTATCATGCTAGCGTTCATACCGGTGTTGGCAGACACATTTGGGTGGGACTATGACCCTTCCATATCGCCAATGTTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

171

Amino Acids

19.35

Weight (kDa)

5.96

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 148	8.5e-12	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	206
AfiI	CCNNNNNNNGG	3 cut(s)	79, 271, 272
AflIII	ACRYGT	1 cut(s)	115
AgeI	ACCGGT	1 cut(s)	451
AgsI	TTSAA	2 cut(s)	46, 226
AluBI	AGCT	3 cut(s)	135, 260, 360
AluI	AGCT	3 cut(s)	135, 260, 360
Alw21I	GWGCWC	1 cut(s)	8
Alw44I	GTGCAC	1 cut(s)	4
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	2 cut(s)	101, 260
ApoI	RAATTY	1 cut(s)	206
AsiGI	ACCGGT	1 cut(s)	451
AspLEI	GCGC	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	61
AsuNHI	GCTAGC	1 cut(s)	439
BaeGI	GKGCMC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	113, 247
BccI	CCATC	1 cut(s)	169
BfaI	CTAG	3 cut(s)	239, 396, 440
BfmI	CTRYAG	1 cut(s)	99
BisI	GCNGC	2 cut(s)	102, 261
BlpI	GCTNAGC	1 cut(s)	152
BlsI	GCNGC	2 cut(s)	103, 262
BmsI	GCATC	1 cut(s)	394
BmtI	GCTAGC	1 cut(s)	443
Bpu1102I	GCTNAGC	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	32
BsaJI	CCNNGG	4 cut(s)	105, 138, 287, 310
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 271, 272
Bse118I	RCCGGY	1 cut(s)	451
BseDI	CCNNGG	4 cut(s)	105, 138, 287, 310
BseGI	GGATG	2 cut(s)	180, 205
BseLI	CCNNNNNNNGG	3 cut(s)	79, 271, 272
BseRI	GAGGAG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	113, 247
BshTI	ACCGGT	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	452
BslFI	GGGAC	2 cut(s)	123, 491
BslI	CCNNNNNNNGG	3 cut(s)	79, 271, 272
BsmFI	GGGAC	2 cut(s)	123, 491
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	127, 304, 400
Bsp1720I	GCTNAGC	1 cut(s)	152
BspMAI	CTGCAG	1 cut(s)	103
BspOI	GCTAGC	1 cut(s)	443
BsrFI	RCCGGY	1 cut(s)	451
BssAI	RCCGGY	1 cut(s)	451
BssECI	CCNNGG	4 cut(s)	105, 138, 287, 310
BssMI	GATC	3 cut(s)	127, 304, 400
BssT1I	CCWWGG	4 cut(s)	105, 138, 287, 310
Bst4CI	ACNGT	1 cut(s)	96
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	248, 441
BstDEI	CTNAG	3 cut(s)	20, 131, 152
BstEII	GGTNACC	1 cut(s)	67
BstF5I	GGATG	2 cut(s)	180, 205
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	3 cut(s)	130, 307, 403
BstMBI	GATC	3 cut(s)	127, 304, 400
BstPI	GGTNACC	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	113, 247
BtsCI	GGATG	2 cut(s)	180, 205
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	248, 441
CfoI	GCGC	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	451
CspAI	ACCGGT	1 cut(s)	451
CviAII	CATG	4 cut(s)	76, 163, 196, 436
CviJI	RGCY	6 cut(s)	104, 135, 246, 260, 335, 360
CviKI_1	RGCY	6 cut(s)	104, 135, 246, 260, 335, 360
DdeI	CTNAG	3 cut(s)	20, 131, 152
DpnI	GATC	3 cut(s)	129, 306, 402
DpnII	GATC	3 cut(s)	127, 304, 400
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco130I	CCWWGG	4 cut(s)	105, 138, 287, 310
Eco91I	GGTNACC	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	67
EcoT14I	CCWWGG	4 cut(s)	105, 138, 287, 310
ErhI	CCWWGG	4 cut(s)	105, 138, 287, 310
FaeI	CATG	4 cut(s)	79, 166, 199, 439
FaiI	YATR	8 cut(s)	77, 164, 197, 233, 437, 449, 483, 494
FaqI	GGGAC	2 cut(s)	123, 491
FatI	CATG	4 cut(s)	75, 162, 195, 435
Fnu4HI	GCNGC	2 cut(s)	102, 261
FokI	GGATG	2 cut(s)	187, 212
Fsp4HI	GCNGC	2 cut(s)	102, 261
FspBI	CTAG	3 cut(s)	239, 396, 440
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	2 cut(s)	102, 261
HapII	CCGG	1 cut(s)	452
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	4 cut(s)	79, 166, 199, 439
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	3 cut(s)	83, 235, 315
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	6, 340
Hpy188III	TCNNGA	4 cut(s)	11, 239, 396, 404
Hpy8I	GTNNAC	2 cut(s)	6, 340
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	4 cut(s)	52, 236, 325, 498
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	4 cut(s)	6, 101, 171, 250
HpyF3I	CTNAG	3 cut(s)	20, 131, 152
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	4 cut(s)	79, 166, 199, 439
HspAI	GCGC	1 cut(s)	156
Kzo9I	GATC	3 cut(s)	127, 304, 400
LmnI	GCTCC	4 cut(s)	140, 257, 301, 382
LpnPI	CCDG	2 cut(s)	157, 465
Lsp1109I	GCAGC	2 cut(s)	113, 247
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	3 cut(s)	239, 396, 440
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	15, 67
MalI	GATC	3 cut(s)	129, 306, 402
MboI	GATC	3 cut(s)	127, 304, 400
MboII	GAAGA	3 cut(s)	74, 199, 419
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	206, 251
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	5 cut(s)	48, 58, 83, 210, 373
MslI	CAYNNNNRTG	3 cut(s)	74, 452, 472
MspI	CCGG	1 cut(s)	452
NdeII	GATC	3 cut(s)	127, 304, 400
NheI	GCTAGC	1 cut(s)	439
NlaIII	CATG	4 cut(s)	79, 166, 199, 439
NmuCI	GTSAC	1 cut(s)	67
PfeI	GAWTC	3 cut(s)	83, 235, 315
PinAI	ACCGGT	1 cut(s)	451
PkrI	GCNGC	2 cut(s)	103, 262
PspEI	GGTNACC	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	103
RseI	CAYNNNNRTG	3 cut(s)	74, 452, 472
SatI	GCNGC	2 cut(s)	102, 261
Sau3AI	GATC	3 cut(s)	127, 304, 400
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	69, 118, 137, 144, 262, 348, 362
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	99
SmiMI	CAYNNNNRTG	3 cut(s)	74, 452, 472
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	206, 251
SspMI	CTAG	3 cut(s)	239, 396, 440
StyI	CCWWGG	4 cut(s)	105, 138, 287, 310
TaaI	ACNGT	1 cut(s)	96
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	91
TasI	AATT	2 cut(s)	206, 251
TfiI	GAWTC	3 cut(s)	83, 235, 315
TscAI	CASTG	1 cut(s)	57
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	2 cut(s)	101, 260
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	344, 436
TspRI	CASTG	1 cut(s)	57
VneI	GTGCAC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	206
XbaI	TCTAGA	2 cut(s)	238, 395
XspI	CTAG	3 cut(s)	239, 396, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.