Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000698.1

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Reverse (-)

280368 .. 281331

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000698.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgaaggccgttaacaaggtgtttgatgactttttcgagaagattattgatcaacatctccaatcgagggatgagggaaagacgaaggactttgttgatgtaatgctcagctttttggggactcaagaatctgaatacctaattggacgctccaatatcaaagcaatcattttggacatgtttgtggcctcaatggacacatcagcaacaacaattgagtgggccctctctgaactcataaaacatccacaactaatgaagaaggtacaaaaagagctagagcatgtggtgggcatggagagaatggttaaggaatcagacttggacaagttggagtacctggacatgatagtgaaagaaaccttgaggctacatccagtggcaccattgttgcttccccatgcatctactgaagattgcactgttaatggcttccacatacccaaaaaatcgcgcgttattataaacatgtgggcaattgggagagacaagcatgcttggaccaatgcagacgacttcatacccgaaaggtttgcagggagtaatatagacctgaggggaaaccactttcagcttattccatctgggtcgggtcgcagaagttgccctggaattgaattagggctagttgtggtcaagctagtattggcacaacttcttgcccactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

222

Amino Acids

25.16

Weight (kDa)

6.14

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AccB1I	GGYRCC	1 cut(s)	382
AccII	CGCG	2 cut(s)	454, 456
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	2 cut(s)	267, 338
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	2 cut(s)	177, 468
AgsI	TTSAA	1 cut(s)	617
AjnI	CCWGG	2 cut(s)	339, 607
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	4 cut(s)	111, 277, 574, 640
AluI	AGCT	4 cut(s)	111, 277, 574, 640
Alw26I	GTCTC	1 cut(s)	480
AoxI	GGCC	3 cut(s)	6, 186, 222
ApaI	GGGCCC	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	456
AspS9I	GGNCC	3 cut(s)	222, 223, 501
AvaII	GGWCC	1 cut(s)	501
AxyI	CCTNAGG	1 cut(s)	554
BaeGI	GKGCMC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	226
BccI	CCATC	1 cut(s)	589
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BciT130I	CCWGG	2 cut(s)	341, 609
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	480
BfaI	CTAG	3 cut(s)	278, 626, 641
BlpI	GCTNAGC	1 cut(s)	107
Bme1390I	CCNGG	2 cut(s)	341, 609
Bme18I	GGWCC	1 cut(s)	501
BmgT120I	GGNCC	3 cut(s)	222, 223, 501
BmiI	GGNNCC	2 cut(s)	224, 384
BmrFI	CCNGG	2 cut(s)	341, 609
BmsI	GCATC	1 cut(s)	413
Bpu1102I	GCTNAGC	1 cut(s)	107
BpuEI	CTTGAG	2 cut(s)	108, 385
BsaBI	GATNNNNATC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	377
Bse21I	CCTNAGG	1 cut(s)	554
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	2 cut(s)	341, 609
BseDI	CCNNGG	1 cut(s)	607
BseGI	GGATG	3 cut(s)	76, 244, 373
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	2 cut(s)	121, 545
BseNI	ACTGG	1 cut(s)	377
BseSI	GKGCMC	1 cut(s)	226
Bsh1236I	CGCG	2 cut(s)	454, 456
BshFI	GGCC	3 cut(s)	8, 188, 224
BshNI	GGYRCC	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	480
BsmFI	GGGAC	1 cut(s)	133
BsnI	GGCC	3 cut(s)	8, 188, 224
Bsp120I	GGGCCC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	49
Bsp1720I	GCTNAGC	1 cut(s)	107
BspANI	GGCC	3 cut(s)	8, 188, 224
BspCNI	CTCAG	2 cut(s)	120, 546
BspFNI	CGCG	2 cut(s)	454, 456
BspLI	GGNNCC	2 cut(s)	224, 384
BspT107I	GGYRCC	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	1 cut(s)	607
BssMI	GATC	1 cut(s)	49
Bst2UI	CCWGG	2 cut(s)	341, 609
Bst4CI	ACNGT	1 cut(s)	424
BstAPI	GCANNNNNTGC	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	2 cut(s)	107, 554
BstF5I	GGATG	3 cut(s)	76, 244, 373
BstFNI	CGCG	2 cut(s)	454, 456
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	480
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	603
BstNI	CCWGG	2 cut(s)	341, 609
BstNSI	RCATGY	4 cut(s)	181, 287, 472, 497
BstSCI	CCNGG	2 cut(s)	339, 607
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	2 cut(s)	454, 456
Bsu36I	CCTNAGG	1 cut(s)	554
BsuRI	GGCC	3 cut(s)	8, 188, 224
BtsCI	GGATG	3 cut(s)	76, 244, 373
BtsIMutI	CAGTG	3 cut(s)	384, 420, 664
Cac8I	GCNNGC	1 cut(s)	495
CfoI	GCGC	1 cut(s)	456
Cfr13I	GGNCC	3 cut(s)	222, 223, 501
CseI	GACGC	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	266, 337
CviAII	CATG	7 cut(s)	178, 284, 295, 346, 401, 469, 494
CviQI	GTAC	2 cut(s)	266, 337
DdeI	CTNAG	2 cut(s)	107, 554
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	501
Eco57I	CTGAAG	1 cut(s)	432
Eco81I	CCTNAGG	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	339, 607
EcoT22I	ATGCAT	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	226
FaeI	CATG	7 cut(s)	181, 287, 298, 349, 404, 472, 497
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	7 cut(s)	177, 283, 294, 345, 400, 468, 493
FbaI	TGATCA	1 cut(s)	49
FokI	GGATG	3 cut(s)	83, 231, 360
FriOI	GRGCYC	1 cut(s)	226
FspBI	CTAG	3 cut(s)	278, 626, 641
GlaI	GCGC	1 cut(s)	455
HaeIII	GGCC	3 cut(s)	8, 188, 224
HgaI	GACGC	1 cut(s)	156
HhaI	GCGC	1 cut(s)	456
Hin1II	CATG	7 cut(s)	181, 287, 298, 349, 404, 472, 497
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	3 cut(s)	121, 128, 314
HpaI	GTTAAC	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	3 cut(s)	133, 232, 319
Hpy188III	TCNNGA	2 cut(s)	37, 125
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	79, 256
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4V	TGCA	4 cut(s)	404, 420, 509, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	603
HpyF3I	CTNAG	2 cut(s)	107, 554
Hsp92II	CATG	7 cut(s)	181, 287, 298, 349, 404, 472, 497
HspAI	GCGC	1 cut(s)	454
Ksp22I	TGATCA	1 cut(s)	49
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	8 cut(s)	326, 353, 390, 522, 566, 570, 594, 621
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	3 cut(s)	278, 626, 641
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	3 cut(s)	52, 271, 425
MfeI	CAATTG	2 cut(s)	213, 477
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	5 cut(s)	141, 213, 477, 612, 617
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	6 cut(s)	60, 67, 199, 236, 360, 549
Mph1103I	ATGCAT	1 cut(s)	406
MseI	TTAA	3 cut(s)	12, 309, 426
MslI	CAYNNNNRTG	2 cut(s)	182, 350
MspR9I	CCNGG	2 cut(s)	341, 609
MunI	CAATTG	2 cut(s)	213, 477
MvaI	CCWGG	2 cut(s)	341, 609
MvnI	CGCG	2 cut(s)	454, 456
MwoI	GCNNNNNNNGC	1 cut(s)	603
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	7 cut(s)	181, 287, 298, 349, 404, 472, 497
NlaIV	GGNNCC	2 cut(s)	224, 384
NsiI	ATGCAT	1 cut(s)	406
NspI	RCATGY	4 cut(s)	181, 287, 472, 497
PaeI	GCATGC	1 cut(s)	497
PciI	ACATGT	2 cut(s)	177, 468
PfeI	GAWTC	2 cut(s)	128, 314
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PscI	ACATGT	2 cut(s)	177, 468
PsiI	TTATAA	1 cut(s)	464
Psp6I	CCWGG	2 cut(s)	339, 607
PspGI	CCWGG	2 cut(s)	339, 607
PspN4I	GGNNCC	2 cut(s)	224, 384
PspOMI	GGGCCC	1 cut(s)	222
PspPI	GGNCC	3 cut(s)	222, 223, 501
RsaI	GTAC	2 cut(s)	267, 338
RsaNI	GTAC	2 cut(s)	266, 337
RseI	CAYNNNNRTG	2 cut(s)	182, 350
SaqAI	TTAA	3 cut(s)	12, 309, 426
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	3 cut(s)	222, 223, 501
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	2 cut(s)	341, 609
SduI	GDGCHC	1 cut(s)	226
SfaNI	GCATC	1 cut(s)	413
SinI	GGWCC	1 cut(s)	501
SmiMI	CAYNNNNRTG	2 cut(s)	182, 350
SmlI	CTYRAG	2 cut(s)	123, 364
SmoI	CTYRAG	2 cut(s)	123, 364
SphI	GCATGC	1 cut(s)	497
Sse9I	AATT	5 cut(s)	141, 213, 477, 612, 617
SspMI	CTAG	3 cut(s)	278, 626, 641
StyD4I	CCNGG	2 cut(s)	339, 607
TaaI	ACNGT	1 cut(s)	424
TaqI	TCGA	2 cut(s)	36, 65
TasI	AATT	5 cut(s)	141, 213, 477, 612, 617
TfiI	GAWTC	2 cut(s)	128, 314
Tru1I	TTAA	3 cut(s)	12, 309, 426
Tru9I	TTAA	3 cut(s)	12, 309, 426
TscAI	CASTG	2 cut(s)	384, 427
TspDTI	ATGAA	3 cut(s)	17, 272, 508
TspRI	CASTG	2 cut(s)	384, 427
VpaK11BI	GGWCC	1 cut(s)	501
XceI	RCATGY	4 cut(s)	181, 287, 472, 497
XspI	CTAG	3 cut(s)	278, 626, 641
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.