Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Forward (+)

25696798 .. 25697283

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1188100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGTGGAGGAATCAGACTTGGACAAATTAGAGTACTTGGACATGGTAGTAAAGGAAACATTGAGGCTACATCCAGTGGTACCATTGTTGGTTCCTCATGCAGCCAGGGAAGATTGCACCGTCCATGGCTACCACATACCTAAAAAGTCACACATTATCATAAACGCTTGGGCAATCGGGAGAGACCCAAGTGCTTGGACGGATGCAGAGAAGTTCATACCAGAGAGATTTGTAGGTAATAACATTGATGTTAGAGGAAATCACTTCCAGCTTATCCCATTTGGCTCTGGTAGAAGACGTTGCCTTGGAATTCAGTTAGGCCTTACTGTGGTCCAGTTAGTGTTGGCACAACTTGTGCAATGTTTTGATTGGGAACTTCCAAATAACATGTTGCCAAATGAGTTGGATATGACTGAGGAGTTTGGTTTAACAGTTCTGAGGGCTACCCATCTACTCTTTATTCCTTCCTACCGCCTTCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

162

Amino Acids

18.45

Weight (kDa)

5.95

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 144	9.7e-48	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	79
AccB1I	GGYRCC	1 cut(s)	79
AciI	CCGC	1 cut(s)	472
AcsI	RAATTY	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	461
AfaI	GTAC	2 cut(s)	35, 81
AfiI	CCNNNNNNNGG	1 cut(s)	328
AflIII	ACRYGT	1 cut(s)	387
AjnI	CCWGG	1 cut(s)	104
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	177
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	309
Asp718I	GGTACC	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	331
BaeI	ACNNNNGTAYC	2 cut(s)	71, 104
BanI	GGYRCC	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	1 cut(s)	456
BciT130I	CCWGG	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	177
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BmcAI	AGTACT	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	81, 93
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	301
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	105, 124, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	2 cut(s)	74, 334
Bse3DI	GCAATG	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	106
BseDI	CCNNGG	3 cut(s)	105, 124, 304
BseGI	GGATG	2 cut(s)	70, 208
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMI	GCAATG	1 cut(s)	365
BseMII	CTCAG	2 cut(s)	405, 428
BseNI	ACTGG	2 cut(s)	74, 334
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	113
BshFI	GGCC	1 cut(s)	321
BshNI	GGYRCC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	321
Bso31I	GGTCTC	1 cut(s)	177
Bsp19I	CCATGG	1 cut(s)	124
BspACI	CCGC	1 cut(s)	472
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	2 cut(s)	406, 429
BspLI	GGNNCC	2 cut(s)	81, 93
BspT107I	GGYRCC	1 cut(s)	79
BspTNI	GGTCTC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	74, 334
BssECI	CCNNGG	3 cut(s)	105, 124, 304
BssT1I	CCWWGG	2 cut(s)	124, 304
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	3 cut(s)	121, 328, 433
BstDEI	CTNAG	2 cut(s)	414, 437
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	70, 208
BstMAI	GTCTC	1 cut(s)	177
BstNI	CCWGG	1 cut(s)	106
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	301
BstXI	CCANNNNNNTGG	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	321
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	70, 208
BtsIMutI	CAGTG	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	34, 80
CviAII	CATG	4 cut(s)	43, 98, 125, 388
CviJI	RGCY	7 cut(s)	67, 104, 129, 271, 285, 321, 443
CviKI_1	RGCY	7 cut(s)	67, 104, 129, 271, 285, 321, 443
CviQI	GTAC	2 cut(s)	34, 80
DdeI	CTNAG	2 cut(s)	414, 437
Eco130I	CCWWGG	2 cut(s)	124, 304
Eco147I	AGGCCT	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	461
EcoRI	GAATTC	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	104
EcoT14I	CCWWGG	2 cut(s)	124, 304
ErhI	CCWWGG	2 cut(s)	124, 304
FaeI	CATG	4 cut(s)	46, 101, 128, 391
FaiI	YATR	8 cut(s)	44, 99, 126, 137, 161, 218, 389, 410
FatI	CATG	4 cut(s)	42, 97, 124, 387
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	2 cut(s)	57, 215
Fsp4HI	GCNGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	321
Hin1II	CATG	4 cut(s)	46, 101, 128, 391
HinfI	GANTC	1 cut(s)	11
Hpy188I	TCNGA	3 cut(s)	16, 438, 480
Hpy188III	TCNNGA	1 cut(s)	178
HpyAV	CCTTC	2 cut(s)	474, 485
HpyCH4III	ACNGT	3 cut(s)	121, 328, 433
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	4 cut(s)	101, 117, 206, 358
HpyF3I	CTNAG	2 cut(s)	414, 437
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	4 cut(s)	46, 101, 128, 391
KpnI	GGTACC	1 cut(s)	83
LpnPI	CCDG	7 cut(s)	87, 91, 118, 234, 273, 281, 347
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	1 cut(s)	193
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	147
MboII	GAAGA	2 cut(s)	122, 306
MluCI	AATT	2 cut(s)	26, 309
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	5 cut(s)	57, 105, 248, 409, 432
MseI	TTAA	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	106
NcoI	CCATGG	1 cut(s)	124
NlaIII	CATG	4 cut(s)	46, 101, 128, 391
NlaIV	GGNNCC	2 cut(s)	81, 93
NmuCI	GTSAC	1 cut(s)	147
NspI	RCATGY	1 cut(s)	391
PceI	AGGCCT	1 cut(s)	321
PciI	ACATGT	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	103
PscI	ACATGT	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	81, 93
PspPI	GGNCC	1 cut(s)	331
RsaI	GTAC	2 cut(s)	35, 81
RsaNI	GTAC	2 cut(s)	34, 80
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	1 cut(s)	102
Sau96I	GGNCC	1 cut(s)	331
ScaI	AGTACT	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	106
SetI	ASST	4 cut(s)	142, 238, 273, 301
SfaNI	GCATC	1 cut(s)	193
SinI	GGWCC	1 cut(s)	331
Sse9I	AATT	2 cut(s)	26, 309
SseBI	AGGCCT	1 cut(s)	321
SsiI	CCGC	1 cut(s)	472
StuI	AGGCCT	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	104
StyI	CCWWGG	2 cut(s)	124, 304
TaaI	ACNGT	3 cut(s)	121, 328, 433
TaiI	ACGT	1 cut(s)	301
TasI	AATT	2 cut(s)	26, 309
TatI	WGTACW	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	147
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	147
TspDTI	ATGAA	1 cut(s)	205
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	1 cut(s)	309
XceI	RCATGY	1 cut(s)	391
ZrmI	AGTACT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.