Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000698.1

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Reverse (-)

281596 .. 281961

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000698.1_g000057.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgtctaatgacattattctagtagtgagggtttcctattttcggaagcctcaacttgttaggggaatttccttacaaagaccacacagattggctcaaaagtatggtgacatcatgcaaatgcgtttaggcctcgtgtctgccatcatcgtctcctcccctcaagcagccgagctcttcctcaagacccacgaccttgttttcgcaagcaggccacctcttgaaggcgcaaagcacatctgttttgggcagaagaacctgagcttttccaagtatggctcttattggcgagacatgcgcaagttgtgcaccctcgagttgctcagcaaccacaaaatcaattctttcgaggaaatgaggagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

121

Amino Acids

14.02

Weight (kDa)

10.14

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	66
AfiI	CCNNNNNNNGG	2 cut(s)	42, 224
AgsI	TTSAA	1 cut(s)	224
AluBI	AGCT	2 cut(s)	175, 264
AluI	AGCT	2 cut(s)	175, 264
Alw21I	GWGCWC	2 cut(s)	177, 311
Alw26I	GTCTC	2 cut(s)	157, 285
Alw44I	GTGCAC	1 cut(s)	307
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	2 cut(s)	130, 212
ApaLI	GTGCAC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	66
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AspLEI	GCGC	2 cut(s)	230, 300
AsuHPI	GGTGA	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	314
BaeGI	GKGCMC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	177
BauI	CACGAG	1 cut(s)	134
Bbv12I	GWGCWC	2 cut(s)	177, 311
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	157, 285
BfaI	CTAG	1 cut(s)	20
BisI	GCNGC	1 cut(s)	168
BlpI	GCTNAGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	314
Bpu10I	CCTNAGC	1 cut(s)	260
Bpu1102I	GCTNAGC	1 cut(s)	323
BpuEI	CTTGAG	2 cut(s)	147, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 224
BseLI	CCNNNNNNNGG	2 cut(s)	42, 224
BseMII	CTCAG	2 cut(s)	251, 337
BseRI	GAGGAG	1 cut(s)	145
BseSI	GKGCMC	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	179
BshFI	GGCC	2 cut(s)	132, 214
BsiHKAI	GWGCWC	2 cut(s)	177, 311
BsiHKCI	CYCGRG	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	42, 224
BsmAI	GTCTC	2 cut(s)	157, 285
BsmBI	CGTCTC	1 cut(s)	157
BsnI	GGCC	2 cut(s)	132, 214
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	177, 311
Bsp1720I	GCTNAGC	1 cut(s)	323
BspANI	GGCC	2 cut(s)	132, 214
BspCNI	CTCAG	2 cut(s)	252, 336
BspQI	GCTCTTC	1 cut(s)	182
BssSI	CACGAG	1 cut(s)	134
Bst2BI	CACGAG	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	208, 212
BstDEI	CTNAG	2 cut(s)	260, 323
BstENI	CCTNNNNNAGG	1 cut(s)	222
BstHHI	GCGC	2 cut(s)	230, 300
BstMAI	GTCTC	2 cut(s)	157, 285
BstMWI	GCNNNNNNNGC	2 cut(s)	295, 306
BstNSI	RCATGY	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	132, 214
Cac8I	GCNNGC	2 cut(s)	208, 212
CfoI	GCGC	2 cut(s)	230, 300
CspCI	CAANNNNNGTGG	2 cut(s)	72, 107
CviAII	CATG	2 cut(s)	115, 295
CviJI	RGCY	8 cut(s)	49, 95, 132, 170, 175, 214, 264, 279
CviKI_1	RGCY	8 cut(s)	49, 95, 132, 170, 175, 214, 264, 279
DdeI	CTNAG	2 cut(s)	260, 323
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	175
Eco147I	AGGCCT	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	2 cut(s)	118, 298
FaiI	YATR	4 cut(s)	105, 116, 276, 296
FatI	CATG	2 cut(s)	114, 294
Fnu4HI	GCNGC	1 cut(s)	168
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	20
FspI	TGCGCA	1 cut(s)	299
GlaI	GCGC	2 cut(s)	229, 299
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	132, 214
HhaI	GCGC	2 cut(s)	230, 300
Hin1II	CATG	2 cut(s)	118, 298
Hin6I	GCGC	2 cut(s)	228, 298
HinP1I	GCGC	2 cut(s)	228, 298
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	2 cut(s)	184, 221
Hpy8I	GTNNAC	1 cut(s)	309
HpyAV	CCTTC	1 cut(s)	218
HpyCH4V	TGCA	2 cut(s)	118, 309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	295, 306
HpyF3I	CTNAG	2 cut(s)	260, 323
Hsp92II	CATG	2 cut(s)	118, 298
HspAI	GCGC	2 cut(s)	228, 298
LguI	GCTCTTC	1 cut(s)	182
LpnPI	CCDG	2 cut(s)	196, 272
Lsp1109I	GCAGC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	107
MboII	GAAGA	2 cut(s)	169, 265
MhlI	GDGCHC	2 cut(s)	177, 311
MluCI	AATT	2 cut(s)	66, 340
MslI	CAYNNNNRTG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	295, 306
NlaIII	CATG	2 cut(s)	118, 298
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	107
NsbI	TGCGCA	1 cut(s)	299
NspI	RCATGY	1 cut(s)	298
PaeR7I	CTCGAG	1 cut(s)	314
PceI	AGGCCT	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	169
Psp124BI	GAGCTC	1 cut(s)	177
PspXI	VCTCGAGB	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	119
SacI	GAGCTC	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	182
SatI	GCNGC	1 cut(s)	168
SduI	GDGCHC	2 cut(s)	177, 311
SetI	ASST	5 cut(s)	177, 198, 220, 261, 266
Sfr274I	CTCGAG	1 cut(s)	314
SlaI	CTCGAG	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	3 cut(s)	162, 182, 314
SmoI	CTYRAG	3 cut(s)	162, 182, 314
Sse9I	AATT	2 cut(s)	66, 340
SseBI	AGGCCT	1 cut(s)	132
SspMI	CTAG	1 cut(s)	20
SstI	GAGCTC	1 cut(s)	177
StuI	AGGCCT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	315, 348
TasI	AATT	2 cut(s)	66, 340
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	107
VneI	GTGCAC	1 cut(s)	307
XagI	CCTNNNNNAGG	1 cut(s)	222
XapI	RAATTY	1 cut(s)	66
XceI	RCATGY	1 cut(s)	298
XhoI	CTCGAG	1 cut(s)	314
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.