Rh2DG267000

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000398
Physical Location & Seq
Forward (+)
28905397 .. 28907398
2002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG267000.1

Sequence Viewer

Length: 783 bp
ATGTTAGGGGAGTTCCCTCATGTCGATCTTCACCGACTAGCCCAAAAGCACGGTGACATCATGCACCTGCGCTTAGGCCTGGTGCCTACCATTGTTGTCTCATCCCCTCAAGCGGCTGAGTTGTTTCTTAAAACGCACGACCTAGCTTTTGCCACTAGGCCACCGCATGAAGCTGCAAAGCACATTTCTTATGGCCAAAGGAACTTATCCTATGCCGAGTATGGGTCTTATTGGCGCACCATTCGCAAGATGTGCACCCTTGAATTACTCAGCAACCATAAAATCAATTCTTTCAAGTCCATGAGGAAAGAAGAGCTTGATCTTTTCATTAACTTCATCCGAGAGGCTTCCCACGATCATGCTACGGTTGATCTCAGCGCCAAGGTTTCGTCTCTCAATGCAGACATGACGTGCCGAATGGTGTTTGGAAAGAAGTACACGGATAAGGAATTTGATGAGAAGGGTTTCCAGGCTTGGATTCAAGAGGGTATGCATCTAGCAGGCACCCCCAACTTTGGAGACTACCTTCCTTTTCTTGCTCCATTTGACCTCCAAGGTTTAACTAAGCGAATGAAGGCTGTTAGCAAGGTGTTTGGTGACTTTTTTGAGAAGATAATTGACGAGCACATCGAATCTCAGGATGATCCAGAAAGGACCAAAGACTTTGTCGATGTCATGTTGGGTTTCATGGGATCGCAAGAATCTGAGTACAAAATTGAACGCTCCAATATCAAAGCCATAATTCTGTTGGAACTCGACCGTAGGGTTAATGCTAACTATTAG

Protein Analysis

260

Amino Acids

29.93

Weight (kDa)

6.31

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 4 - 248 7.5e-31 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 75
Acc36I ACCTGC 1 cut(s) 75
AccB1I GGYRCC 2 cut(s) 82, 503
AciI CCGC 2 cut(s) 113, 164
AclWI GGATC 2 cut(s) 638, 700
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 1 cut(s) 449
AfaI GTAC 2 cut(s) 437, 710
AfiI CCNNNNNNNGG 3 cut(s) 112, 222, 515
AgsI TTSAA 4 cut(s) 263, 295, 482, 719
AjiI CACGTC 1 cut(s) 411
AjnI CCWGG 2 cut(s) 78, 468
AluBI AGCT 3 cut(s) 146, 173, 316
AluI AGCT 3 cut(s) 146, 173, 316
Alw21I GWGCWC 2 cut(s) 257, 627
Alw26I GTCTC 3 cut(s) 103, 396, 513
Alw44I GTGCAC 1 cut(s) 253
AlwI GGATC 2 cut(s) 638, 700
AoxI GGCC 3 cut(s) 76, 158, 193
ApaLI GTGCAC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 449
ArsI GACNNNNNNTTYG 4 cut(s) 131, 163, 651, 683
Asp700I GAANNNNTTC 1 cut(s) 464
AspLEI GCGC 3 cut(s) 72, 237, 380
AspS9I GGNCC 1 cut(s) 654
AsuHPI GGTGA 3 cut(s) 23, 65, 608
AvaII GGWCC 1 cut(s) 654
BaeGI GKGCMC 1 cut(s) 257
BalI TGGCCA 1 cut(s) 195
BanI GGYRCC 2 cut(s) 82, 503
Bbv12I GWGCWC 2 cut(s) 257, 627
BbvI GCAGC 1 cut(s) 160
BciT130I CCWGG 2 cut(s) 80, 470
BcoDI GTCTC 3 cut(s) 103, 396, 513
BfaI CTAG 4 cut(s) 38, 143, 156, 497
BfoI RGCGCY 1 cut(s) 381
BfuAI ACCTGC 1 cut(s) 75
BisI GCNGC 2 cut(s) 114, 174
BlsI GCNGC 2 cut(s) 115, 175
Bme1390I CCNGG 2 cut(s) 80, 470
Bme18I GGWCC 1 cut(s) 654
BmgBI CACGTC 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 654
BmiI GGNNCC 2 cut(s) 84, 505
BmrFI CCNGG 2 cut(s) 80, 470
BmsI GCATC 1 cut(s) 502
Bpu10I CCTNAGC 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 381, 553
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 222, 515
BseBI CCWGG 2 cut(s) 80, 470
BseDI CCNNGG 2 cut(s) 381, 553
BseGI GGATG 3 cut(s) 101, 336, 646
BseLI CCNNNNNNNGG 3 cut(s) 112, 222, 515
BseMII CTCAG 5 cut(s) 108, 283, 388, 650, 696
BseSI GKGCMC 1 cut(s) 257
BseXI GCAGC 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 760
BshFI GGCC 3 cut(s) 78, 160, 195
BshNI GGYRCC 2 cut(s) 82, 503
BsiEI CGRYCG 1 cut(s) 760
BsiHKAI GWGCWC 2 cut(s) 257, 627
BslI CCNNNNNNNGG 3 cut(s) 112, 222, 515
BsmAI GTCTC 3 cut(s) 103, 396, 513
BsmBI CGTCTC 1 cut(s) 396
BsnI GGCC 3 cut(s) 78, 160, 195
Bsp1286I GDGCHC 2 cut(s) 257, 627
Bsp143I GATC 6 cut(s) 25, 319, 355, 370, 643, 692
BspACI CCGC 2 cut(s) 113, 164
BspANI GGCC 3 cut(s) 78, 160, 195
BspCNI CTCAG 5 cut(s) 109, 282, 387, 649, 697
BspLI GGNNCC 2 cut(s) 84, 505
BspMI ACCTGC 1 cut(s) 75
BspPI GGATC 2 cut(s) 638, 700
BspQI GCTCTTC 1 cut(s) 306
BspT107I GGYRCC 2 cut(s) 82, 503
BssECI CCNNGG 2 cut(s) 381, 553
BssMI GATC 6 cut(s) 25, 319, 355, 370, 643, 692
BssT1I CCWWGG 2 cut(s) 381, 553
Bst2UI CCWGG 2 cut(s) 80, 470
Bst4CI ACNGT 3 cut(s) 53, 367, 761
Bst6I CTCTTC 1 cut(s) 306
BstAPI GCANNNNNTGC 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 502
BstDEI CTNAG 7 cut(s) 73, 117, 269, 374, 564, 636, 705
BstF5I GGATG 3 cut(s) 101, 336, 646
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 3 cut(s) 72, 237, 380
BstKTI GATC 6 cut(s) 28, 322, 358, 373, 646, 695
BstMAI GTCTC 3 cut(s) 103, 396, 513
BstMBI GATC 6 cut(s) 25, 319, 355, 370, 643, 692
BstMCI CGRYCG 1 cut(s) 760
BstMWI GCNNNNNNNGC 2 cut(s) 243, 252
BstNI CCWGG 2 cut(s) 80, 470
BstSCI CCNGG 2 cut(s) 78, 468
BstSLI GKGCMC 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 160
BsuRI GGCC 3 cut(s) 78, 160, 195
BtrI CACGTC 1 cut(s) 411
BtsCI GGATG 3 cut(s) 101, 336, 646
BveI ACCTGC 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 502
CfoI GCGC 3 cut(s) 72, 237, 380
Cfr13I GGNCC 1 cut(s) 654
Csp6I GTAC 2 cut(s) 436, 709
CviAII CATG 8 cut(s) 20, 61, 167, 301, 359, 406, 676, 688
CviQI GTAC 2 cut(s) 436, 709
DdeI CTNAG 7 cut(s) 73, 117, 269, 374, 564, 636, 705
DpnI GATC 6 cut(s) 27, 321, 357, 372, 645, 694
DpnII GATC 6 cut(s) 25, 319, 355, 370, 643, 692
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco130I CCWWGG 2 cut(s) 381, 553
Eco147I AGGCCT 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 654
EcoRII CCWGG 2 cut(s) 78, 468
EcoT14I CCWWGG 2 cut(s) 381, 553
EcoT22I ATGCAT 1 cut(s) 495
ErhI CCWWGG 2 cut(s) 381, 553
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 8 cut(s) 23, 64, 170, 304, 362, 409, 679, 691
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FatI CATG 8 cut(s) 19, 60, 166, 300, 358, 405, 675, 687
Fnu4HI GCNGC 2 cut(s) 114, 174
FokI GGATG 3 cut(s) 88, 323, 653
Fsp4HI GCNGC 2 cut(s) 114, 174
FspBI CTAG 4 cut(s) 38, 143, 156, 497
GlaI GCGC 3 cut(s) 71, 236, 379
GluI GCNGC 2 cut(s) 114, 174
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 3 cut(s) 78, 160, 195
HhaI GCGC 3 cut(s) 72, 237, 380
Hin1II CATG 8 cut(s) 23, 64, 170, 304, 362, 409, 679, 691
Hin6I GCGC 3 cut(s) 70, 235, 378
HinP1I GCGC 3 cut(s) 70, 235, 378
HinfI GANTC 3 cut(s) 478, 632, 701
HphI GGTGA 3 cut(s) 23, 65, 608
Hpy166II GTNNAC 2 cut(s) 255, 438
Hpy188I TCNGA 2 cut(s) 341, 706
Hpy188III TCNNGA 3 cut(s) 482, 638, 647
Hpy8I GTNNAC 2 cut(s) 255, 438
HpyAV CCTTC 3 cut(s) 454, 536, 568
HpyCH4III ACNGT 3 cut(s) 53, 367, 761
HpyCH4IV ACGT 1 cut(s) 410
HpyCH4V TGCA 5 cut(s) 64, 176, 255, 401, 493
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 252
HpyF3I CTNAG 7 cut(s) 73, 117, 269, 374, 564, 636, 705
HpySE526I ACGT 1 cut(s) 410
Hsp92II CATG 8 cut(s) 23, 64, 170, 304, 362, 409, 679, 691
HspAI GCGC 3 cut(s) 70, 235, 378
Kzo9I GATC 6 cut(s) 25, 319, 355, 370, 643, 692
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 2 cut(s) 544, 728
LpnPI CCDG 8 cut(s) 65, 80, 92, 455, 482, 486, 623, 660
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 502
MaeI CTAG 4 cut(s) 38, 143, 156, 497
MaeII ACGT 1 cut(s) 410
MaeIII GTNAC 2 cut(s) 53, 596
MalI GATC 6 cut(s) 27, 321, 357, 372, 645, 694
MboI GATC 6 cut(s) 25, 319, 355, 370, 643, 692
MboII GAAGA 3 cut(s) 20, 323, 622
MhlI GDGCHC 2 cut(s) 257, 627
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 6 cut(s) 263, 286, 449, 615, 714, 741
MluNI TGGCCA 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 729
MnlI CCTC 6 cut(s) 27, 117, 297, 337, 478, 560
Mox20I TGGCCA 1 cut(s) 195
Mph1103I ATGCAT 1 cut(s) 495
MroXI GAANNNNTTC 1 cut(s) 464
MscI TGGCCA 1 cut(s) 195
MseI TTAA 4 cut(s) 129, 330, 560, 768
MslI CAYNNNNRTG 1 cut(s) 357
Msp20I TGGCCA 1 cut(s) 195
MspR9I CCNGG 2 cut(s) 80, 470
MvaI CCWGG 2 cut(s) 80, 470
MwoI GCNNNNNNNGC 2 cut(s) 243, 252
NdeII GATC 6 cut(s) 25, 319, 355, 370, 643, 692
NlaIII CATG 8 cut(s) 23, 64, 170, 304, 362, 409, 679, 691
NlaIV GGNNCC 2 cut(s) 84, 505
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 2 cut(s) 53, 596
NsiI ATGCAT 1 cut(s) 495
PaqCI CACCTGC 1 cut(s) 75
PceI AGGCCT 1 cut(s) 78
PciSI GCTCTTC 1 cut(s) 306
PcsI WCGNNNNNNNCGW 1 cut(s) 627
PdmI GAANNNNTTC 1 cut(s) 464
PfeI GAWTC 3 cut(s) 478, 632, 701
PflFI GACNNNGTC 1 cut(s) 665
PkrI GCNGC 2 cut(s) 115, 175
Psp6I CCWGG 2 cut(s) 78, 468
PspGI CCWGG 2 cut(s) 78, 468
PspN4I GGNNCC 2 cut(s) 84, 505
PspPI GGNCC 1 cut(s) 654
PsyI GACNNNGTC 1 cut(s) 665
RsaI GTAC 2 cut(s) 437, 710
RsaNI GTAC 2 cut(s) 436, 709
RseI CAYNNNNRTG 1 cut(s) 357
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 4 cut(s) 129, 330, 560, 768
SatI GCNGC 2 cut(s) 114, 174
Sau3AI GATC 6 cut(s) 25, 319, 355, 370, 643, 692
Sau96I GGNCC 1 cut(s) 654
ScrFI CCNGG 2 cut(s) 80, 470
SduI GDGCHC 2 cut(s) 257, 627
SfaNI GCATC 1 cut(s) 502
SinI GGWCC 1 cut(s) 654
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 6 cut(s) 263, 286, 449, 615, 714, 741
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 2 cut(s) 113, 164
SspMI CTAG 4 cut(s) 38, 143, 156, 497
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 78, 468
StyI CCWWGG 2 cut(s) 381, 553
TaaI ACNGT 3 cut(s) 53, 367, 761
TaiI ACGT 1 cut(s) 413
TaqI TCGA 4 cut(s) 24, 630, 669, 756
TasI AATT 6 cut(s) 263, 286, 449, 615, 714, 741
TatI WGTACW 2 cut(s) 435, 708
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 3 cut(s) 478, 632, 701
Tru1I TTAA 4 cut(s) 129, 330, 560, 768
Tru9I TTAA 4 cut(s) 129, 330, 560, 768
TseFI GTSAC 2 cut(s) 53, 596
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 2 cut(s) 53, 596
TspDTI ATGAA 5 cut(s) 183, 316, 325, 587, 676
TspGWI ACGGA 1 cut(s) 455
Tth111I GACNNNGTC 1 cut(s) 665
VneI GTGCAC 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 654
XapI RAATTY 1 cut(s) 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 745
XmnI GAANNNNTTC 1 cut(s) 464
XspI CTAG 4 cut(s) 38, 143, 156, 497
Zsp2I ATGCAT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.