Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001292.1

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Reverse (-)

27833 .. 28663

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001292.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atggctttcatttcggtaatacttggattgcttgcgcttgtttatgtcctgcaaccctggacatggagaagcaagaagaggttgcctcctggtccgagagggtttcccatttttggaagcctcaacttgttagggaagttacctcacaaagatctgcatcaactggcccgaaagtatggtgacatcatgcacatgcggaacttgagttttgctgagtatggctcttactggcgtgacatgtgcaagatgtgcactcttgagttacttagcaaccacaaaatcaactccttcaagtcaatgaggaaagaagaggtcgcccacatggtggattctattcaagagtctgcagccaaggaacaacatgtttcggttgatcttagctccaaggtgttgtctcttagtgcagacgtgacttgcaggatggtgtttgagaagaaatacatggatgaggaatttagtgagaggggttttaaatccttgattcaagaaggcttgcaattaggagctgcccctaacttgggagattacattccttgcattgctccactcgatctccatggattcactaaacgaatgaaggctgttcacagggtctttgatgactttttggagaagattgtggaggagcatcttcaatctagggatcatggagaaagaagaaccaaggactgtgttgatgtcgcagggcttcatggggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

233

Amino Acids

26.63

Weight (kDa)

8.53

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	325
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	1 cut(s)	651
AcsI	RAATTY	1 cut(s)	452
AdeI	CACNNNGTG	1 cut(s)	325
AfiI	CCNNNNNNNGG	5 cut(s)	63, 113, 325, 517, 518
AflIII	ACRYGT	2 cut(s)	237, 361
AgsI	TTSAA	4 cut(s)	292, 338, 485, 635
AjiI	CACGTC	1 cut(s)	409
AjnI	CCWGG	2 cut(s)	56, 88
AluBI	AGCT	2 cut(s)	381, 506
AluI	AGCT	2 cut(s)	381, 506
Alw21I	GWGCWC	1 cut(s)	254
Alw26I	GTCTC	1 cut(s)	399
Alw44I	GTGCAC	1 cut(s)	250
AlwI	GGATC	1 cut(s)	651
AoxI	GGCC	1 cut(s)	165
ApaLI	GTGCAC	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	347, 506
ApoI	RAATTY	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	92, 166
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	359, 493
BccI	CCATC	1 cut(s)	415
BciT130I	CCWGG	2 cut(s)	58, 90
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	1 cut(s)	639
BfmI	CTRYAG	1 cut(s)	345
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	2 cut(s)	348, 507
BlsI	GCNGC	2 cut(s)	349, 508
Bme1390I	CCNGG	2 cut(s)	58, 90
Bme18I	GGWCC	1 cut(s)	92
BmgBI	CACGTC	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	92, 166
BmrFI	CCNGG	2 cut(s)	58, 90
BmsI	GCATC	2 cut(s)	166, 637
BplI	GAGNNNNNCTC	4 cut(s)	70, 102, 206, 238
BpuEI	CTTGAG	2 cut(s)	223, 278
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	5 cut(s)	56, 351, 384, 556, 663
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	5 cut(s)	63, 113, 325, 517, 518
Bse1I	ACTGG	2 cut(s)	168, 233
Bse3DI	GCAATG	1 cut(s)	537
Bse8I	GATNNNNATC	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	58, 90
BseDI	CCNNGG	5 cut(s)	56, 351, 384, 556, 663
BseGI	GGATG	2 cut(s)	426, 451
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	5 cut(s)	63, 113, 325, 517, 518
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	168, 233
BseRI	GAGGAG	1 cut(s)	638
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	2 cut(s)	359, 493
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	254
BslI	CCNNNNNNNGG	5 cut(s)	63, 113, 325, 517, 518
BsmAI	GTCTC	1 cut(s)	399
BsnI	GGCC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	4 cut(s)	151, 373, 550, 643
Bsp19I	CCATGG	1 cut(s)	556
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	349
BspPI	GGATC	1 cut(s)	651
BsrDI	GCAATG	1 cut(s)	537
BsrI	ACTGG	2 cut(s)	168, 233
BssECI	CCNNGG	5 cut(s)	56, 351, 384, 556, 663
BssMI	GATC	4 cut(s)	151, 373, 550, 643
BssT1I	CCWWGG	4 cut(s)	351, 384, 556, 663
Bst2UI	CCWGG	2 cut(s)	58, 90
Bst4CI	ACNGT	1 cut(s)	671
Bst6I	CTCTTC	2 cut(s)	71, 303
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	33, 494
BstDEI	CTNAG	4 cut(s)	213, 266, 377, 398
BstDSI	CCRYGG	1 cut(s)	556
BstF5I	GGATG	2 cut(s)	426, 451
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	4 cut(s)	154, 376, 553, 646
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	4 cut(s)	151, 373, 550, 643
BstMWI	GCNNNNNNNGC	1 cut(s)	249
BstNI	CCWGG	2 cut(s)	58, 90
BstNSI	RCATGY	3 cut(s)	196, 241, 365
BstSCI	CCNGG	2 cut(s)	56, 88
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	254
BstV1I	GCAGC	2 cut(s)	359, 493
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	167
BtgI	CCRYGG	1 cut(s)	556
BtrI	CACGTC	1 cut(s)	409
BtsCI	GGATG	2 cut(s)	426, 451
Cac8I	GCNNGC	2 cut(s)	33, 494
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	92, 166
DdeI	CTNAG	4 cut(s)	213, 266, 377, 398
DpnI	GATC	4 cut(s)	153, 375, 552, 645
DpnII	GATC	4 cut(s)	151, 373, 550, 643
DraI	TTTAAA	1 cut(s)	472
DraIII	CACNNNGTG	1 cut(s)	325
Eam1104I	CTCTTC	2 cut(s)	71, 303
EarI	CTCTTC	2 cut(s)	71, 303
Eco130I	CCWWGG	4 cut(s)	351, 384, 556, 663
Eco47I	GGWCC	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	56, 88
EcoT14I	CCWWGG	4 cut(s)	351, 384, 556, 663
ErhI	CCWWGG	4 cut(s)	351, 384, 556, 663
Fnu4HI	GCNGC	2 cut(s)	348, 507
FokI	GGATG	2 cut(s)	433, 458
Fsp4HI	GCNGC	2 cut(s)	348, 507
FspBI	CTAG	1 cut(s)	639
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	2 cut(s)	348, 507
HaeIII	GGCC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	37
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HinfI	GANTC	4 cut(s)	329, 341, 481, 561
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	2 cut(s)	252, 586
Hpy188I	TCNGA	2 cut(s)	96, 701
Hpy188III	TCNNGA	3 cut(s)	257, 338, 485
Hpy8I	GTNNAC	2 cut(s)	252, 586
HpyAV	CCTTC	3 cut(s)	298, 482, 571
HpyCH4III	ACNGT	1 cut(s)	671
HpyCH4IV	ACGT	1 cut(s)	408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	249
HpyF3I	CTNAG	4 cut(s)	213, 266, 377, 398
HpySE526I	ACGT	1 cut(s)	408
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	4 cut(s)	151, 373, 550, 643
LmnI	GCTCC	4 cut(s)	386, 503, 547, 625
Lsp1109I	GCAGC	2 cut(s)	359, 493
LweI	GCATC	2 cut(s)	166, 637
MaeI	CTAG	1 cut(s)	639
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	5 cut(s)	138, 179, 233, 261, 409
MalI	GATC	4 cut(s)	153, 375, 552, 645
MboI	GATC	4 cut(s)	151, 373, 550, 643
MboII	GAAGA	6 cut(s)	88, 320, 445, 623, 625, 669
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	2 cut(s)	452, 497
MlyI	GAGTC	1 cut(s)	350
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	58, 90
MvaI	CCWGG	2 cut(s)	58, 90
MwoI	GCNNNNNNNGC	1 cut(s)	249
NcoI	CCATGG	1 cut(s)	556
NdeII	GATC	4 cut(s)	151, 373, 550, 643
NmuCI	GTSAC	3 cut(s)	179, 233, 409
NspI	RCATGY	3 cut(s)	196, 241, 365
PciI	ACATGT	2 cut(s)	237, 361
PfeI	GAWTC	3 cut(s)	329, 481, 561
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	349, 508
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PscI	ACATGT	2 cut(s)	237, 361
Psp6I	CCWGG	2 cut(s)	56, 88
PspGI	CCWGG	2 cut(s)	56, 88
PspPI	GGNCC	2 cut(s)	92, 166
PstI	CTGCAG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	2 cut(s)	348, 507
Sau3AI	GATC	4 cut(s)	151, 373, 550, 643
Sau96I	GGNCC	2 cut(s)	92, 166
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	2 cut(s)	58, 90
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	7 cut(s)	83, 145, 315, 383, 390, 411, 508
SfaNI	GCATC	2 cut(s)	166, 637
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	191
SmlI	CTYRAG	2 cut(s)	202, 257
SmoI	CTYRAG	2 cut(s)	202, 257
Sse9I	AATT	2 cut(s)	452, 497
SsiI	CCGC	1 cut(s)	196
SspMI	CTAG	1 cut(s)	639
StyD4I	CCNGG	2 cut(s)	56, 88
StyI	CCWWGG	4 cut(s)	351, 384, 556, 663
TaaI	ACNGT	1 cut(s)	671
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	549
TasI	AATT	2 cut(s)	452, 497
TfiI	GAWTC	3 cut(s)	329, 481, 561
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TseFI	GTSAC	3 cut(s)	179, 233, 409
TseI	GCWGC	2 cut(s)	347, 506
Tsp45I	GTSAC	3 cut(s)	179, 233, 409
TspDTI	ATGAA	2 cut(s)	590, 680
Van91I	CCANNNNNTGG	1 cut(s)	325
VneI	GTGCAC	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	3 cut(s)	196, 241, 365
XspI	CTAG	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.