Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Forward (+)

21776190 .. 21777166

Gene Structure 977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g19370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGACCTGCCGGATGGTGTTTGGGAAGAAGTACAAGGACGAGGAGTTTGGCGGAAGGGGTTTCGCGTCTGTGATGAAAGAGGGTATGAAACTAGCAGCAGCACCTAACTTGGGAGATTTCATTCATTGTATTGCACCGCTTGATCTGCAAGGGCTCACTAAAAAAATGAAGGCTGTTAACAAGGCGTTTGATGAATTTTTTGGGAAGGTTATTGACGAGCATCTTCAATACAAGGATAAAGAAAGAACAAGGGACTTCATCGATGCCCTGCTAGCCCACATGGGGTCTGAAGGATCCGACTACCGAATCGAACGCTTGAATATCAAAGCCATGATGTCGGACATGTTCGCGGCTTCAGCGGACACATCATCAACGACAGTCCAGTGGGCGCTCTCGGAACTCTTGAGGCATCCACAGGATATGAAAAAAGTCCAAAAGGAGTTAGAAAATGTTGTAGGTCTCAAAAGAATGGTGGAGGAATCAGACATGGAGAAATTAGAGTATTTGGACATGGTAGTGAAAGAAACCATGAGGCTACATCCTGTGGTACCGTTGTTGCTTCCTCATGCAGCCATCAAAGATTGCACTGCCGATGGCTACCACATACCGAAGAAGTCACGCATTATCATAAACGCGTGGGCAATCGGGAGAGACCCGAGTGCTTGGGTAGATGCAGAGAAAGAAGTTCGTACCAGAAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

235

Amino Acids

26.62

Weight (kDa)

7.72

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	14
Acc65I	GGTACC	1 cut(s)	547
AccB1I	GGYRCC	1 cut(s)	547
AccII	CGCG	3 cut(s)	65, 350, 635
AciI	CCGC	4 cut(s)	51, 137, 350, 359
AclWI	GGATC	2 cut(s)	288, 301
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	2 cut(s)	309, 339
AfaI	GTAC	3 cut(s)	32, 549, 691
AfiI	CCNNNNNNNGG	2 cut(s)	110, 282
AflIII	ACRYGT	2 cut(s)	342, 633
AgsI	TTSAA	2 cut(s)	227, 319
Alw26I	GTCTC	2 cut(s)	464, 645
AlwI	GGATC	2 cut(s)	288, 301
Ama87I	CYCGRG	1 cut(s)	655
ApeKI	GCWGC	3 cut(s)	95, 98, 569
ApoI	RAATTY	1 cut(s)	194
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
Asp718I	GGTACC	1 cut(s)	547
AspLEI	GCGC	1 cut(s)	391
AsuNHI	GCTAGC	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	655
BaeI	ACNNNNGTAYC	2 cut(s)	539, 572
BamHI	GGATCC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	547
BanII	GRGCYC	1 cut(s)	156
BbvI	GCAGC	3 cut(s)	107, 110, 581
BccI	CCATC	3 cut(s)	7, 581, 587
BcoDI	GTCTC	2 cut(s)	464, 645
BfaI	CTAG	2 cut(s)	92, 272
BfoI	RGCGCY	1 cut(s)	392
BfuAI	ACCTGC	1 cut(s)	14
BisI	GCNGC	4 cut(s)	96, 99, 351, 570
BlsI	GCNGC	4 cut(s)	97, 100, 352, 571
BmeT110I	CYCGRG	1 cut(s)	655
BmiI	GGNNCC	2 cut(s)	295, 549
BmsI	GCATC	4 cut(s)	229, 253, 418, 661
BmtI	GCTAGC	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	424
Bsa29I	ATCGAT	1 cut(s)	261
BsaI	GGTCTC	2 cut(s)	464, 645
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 282
Bse1I	ACTGG	1 cut(s)	382
BseCI	ATCGAT	1 cut(s)	261
BseGI	GGATG	3 cut(s)	18, 409, 538
BseLI	CCNNNNNNNGG	2 cut(s)	110, 282
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	3 cut(s)	107, 110, 581
Bsh1236I	CGCG	3 cut(s)	65, 350, 635
BshNI	GGYRCC	1 cut(s)	547
BshVI	ATCGAT	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	655
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	2 cut(s)	110, 282
BsmAI	GTCTC	2 cut(s)	464, 645
BsmFI	GGGAC	1 cut(s)	266
Bso31I	GGTCTC	2 cut(s)	464, 645
BsoBI	CYCGRG	1 cut(s)	655
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	142, 293
BspACI	CCGC	4 cut(s)	51, 137, 350, 359
BspDI	ATCGAT	1 cut(s)	261
BspFNI	CGCG	3 cut(s)	65, 350, 635
BspLI	GGNNCC	2 cut(s)	295, 549
BspMI	ACCTGC	1 cut(s)	14
BspOI	GCTAGC	1 cut(s)	275
BspPI	GGATC	2 cut(s)	288, 301
BspT107I	GGYRCC	1 cut(s)	547
BspTNI	GGTCTC	2 cut(s)	464, 645
BsrI	ACTGG	1 cut(s)	382
BssMI	GATC	2 cut(s)	142, 293
Bst4CI	ACNGT	2 cut(s)	379, 552
BstC8I	GCNNGC	1 cut(s)	273
BstF5I	GGATG	3 cut(s)	18, 409, 538
BstFNI	CGCG	3 cut(s)	65, 350, 635
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	2 cut(s)	145, 296
BstMAI	GTCTC	2 cut(s)	464, 645
BstMBI	GATC	2 cut(s)	142, 293
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 272, 356
BstNSI	RCATGY	1 cut(s)	346
BstUI	CGCG	3 cut(s)	65, 350, 635
BstV1I	GCAGC	3 cut(s)	107, 110, 581
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
Bsu15I	ATCGAT	1 cut(s)	261
BsuTUI	ATCGAT	1 cut(s)	261
BtsCI	GGATG	3 cut(s)	18, 409, 538
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	2 cut(s)	389, 585
BveI	ACCTGC	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	1 cut(s)	391
ClaI	ATCGAT	1 cut(s)	261
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	3 cut(s)	31, 548, 690
CviAII	CATG	7 cut(s)	280, 331, 343, 487, 511, 529, 566
CviJI	RGCY	8 cut(s)	154, 173, 275, 329, 353, 535, 572, 597
CviKI_1	RGCY	8 cut(s)	154, 173, 275, 329, 353, 535, 572, 597
CviQI	GTAC	3 cut(s)	31, 548, 690
DpnI	GATC	2 cut(s)	144, 295
DpnII	GATC	2 cut(s)	142, 293
EciI	GGCGGA	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	2 cut(s)	464, 645
Eco57I	CTGAAG	2 cut(s)	309, 339
Eco88I	CYCGRG	1 cut(s)	655
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	7 cut(s)	283, 334, 346, 490, 514, 532, 569
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	7 cut(s)	279, 330, 342, 486, 510, 528, 565
Fnu4HI	GCNGC	4 cut(s)	96, 99, 351, 570
FokI	GGATG	3 cut(s)	25, 396, 525
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	4 cut(s)	96, 99, 351, 570
FspBI	CTAG	2 cut(s)	92, 272
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	4 cut(s)	96, 99, 351, 570
HaeII	RGCGCY	1 cut(s)	392
HapII	CCGG	1 cut(s)	10
HgaI	GACGC	1 cut(s)	54
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	7 cut(s)	283, 334, 346, 490, 514, 532, 569
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	2 cut(s)	306, 479
HpaI	GTTAAC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	5 cut(s)	289, 298, 340, 397, 484
Hpy188III	TCNNGA	2 cut(s)	403, 646
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	4 cut(s)	48, 163, 199, 284
HpyCH4III	ACNGT	2 cut(s)	379, 552
HpyCH4V	TGCA	5 cut(s)	134, 148, 569, 585, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 272, 356
Hsp92II	CATG	7 cut(s)	283, 334, 346, 490, 514, 532, 569
HspAI	GCGC	1 cut(s)	389
KpnI	GGTACC	1 cut(s)	551
KspAI	GTTAAC	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	142, 293
LpnPI	CCDG	6 cut(s)	19, 23, 281, 395, 401, 555
Lsp1109I	GCAGC	3 cut(s)	107, 110, 581
LweI	GCATC	4 cut(s)	229, 253, 418, 661
MaeI	CTAG	2 cut(s)	92, 272
MaeIII	GTNAC	1 cut(s)	615
MalI	GATC	2 cut(s)	144, 295
MboI	GATC	2 cut(s)	142, 293
MboII	GAAGA	3 cut(s)	37, 215, 622
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	2 cut(s)	194, 494
MluI	ACGCGT	1 cut(s)	633
MmeI	TCCRAC	2 cut(s)	318, 321
MnlI	CCTC	6 cut(s)	34, 73, 399, 469, 525, 573
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	515
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	1 cut(s)	10
MvnI	CGCG	3 cut(s)	65, 350, 635
MwoI	GCNNNNNNNGC	3 cut(s)	145, 272, 356
NdeII	GATC	2 cut(s)	142, 293
NheI	GCTAGC	1 cut(s)	271
NlaIII	CATG	7 cut(s)	283, 334, 346, 490, 514, 532, 569
NlaIV	GGNNCC	2 cut(s)	295, 549
NmuCI	GTSAC	1 cut(s)	615
NspI	RCATGY	1 cut(s)	346
PciI	ACATGT	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	306, 479
PkrI	GCNGC	4 cut(s)	97, 100, 352, 571
PscI	ACATGT	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	295, 549
PsuI	RGATCY	1 cut(s)	293
RsaI	GTAC	3 cut(s)	32, 549, 691
RsaNI	GTAC	3 cut(s)	31, 548, 690
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	4 cut(s)	96, 99, 351, 570
Sau3AI	GATC	2 cut(s)	142, 293
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	5 cut(s)	8, 106, 210, 460, 702
SfaNI	GCATC	4 cut(s)	229, 253, 418, 661
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
Sse9I	AATT	2 cut(s)	194, 494
SsiI	CCGC	4 cut(s)	51, 137, 350, 359
SspMI	CTAG	2 cut(s)	92, 272
TaaI	ACNGT	2 cut(s)	379, 552
TaqI	TCGA	2 cut(s)	261, 309
TasI	AATT	2 cut(s)	194, 494
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	2 cut(s)	306, 479
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	2 cut(s)	389, 592
TseFI	GTSAC	1 cut(s)	615
TseI	GCWGC	3 cut(s)	95, 98, 569
Tsp45I	GTSAC	1 cut(s)	615
TspDTI	ATGAA	8 cut(s)	89, 101, 109, 113, 182, 207, 247, 437
TspRI	CASTG	2 cut(s)	389, 592
XapI	RAATTY	1 cut(s)	194
XceI	RCATGY	1 cut(s)	346
XspI	CTAG	2 cut(s)	92, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.