Rh1BG154400

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
25293266 .. 25296573
3308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG154400.1

Sequence Viewer

Length: 258 bp
ATGTCACCGAATGATTTGGACTTGACGGAAGAATTTGGAATAACGGGTTTACACTTAACAGTAGTCCTCGACTGCTGGAACAATTTGACAATAGCTCGCCCTTCTGGTTTTCGAAAGGCTGCAGCAAAGGAACAACAAGTTTCGTTTGATCTCAGCTCCAAGGTGTTGTCTCTCAGCGCAGACATGAATTACAGAATGGTGTTTGGGAAGAAGTATATGGATGAGGAGTTTAACGAGAGAGGTTTCAATAGTCTGTGA

Protein Analysis

85

Amino Acids

9.64

Weight (kDa)

4.96

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 32
AgsI TTSAA 1 cut(s) 247
AluBI AGCT 2 cut(s) 95, 156
AluI AGCT 2 cut(s) 95, 156
Alw26I GTCTC 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 119, 122
ApoI RAATTY 1 cut(s) 32
AspLEI GCGC 1 cut(s) 179
AsuII TTCGAA 1 cut(s) 112
BbvI GCAGC 2 cut(s) 106, 134
BcoDI GTCTC 1 cut(s) 174
BfmI CTRYAG 1 cut(s) 120
BisI GCNGC 2 cut(s) 120, 123
BlsI GCNGC 2 cut(s) 121, 124
Bpu14I TTCGAA 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 226
BseMII CTCAG 2 cut(s) 166, 187
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 2 cut(s) 106, 134
BsmAI GTCTC 1 cut(s) 174
Bsp119I TTCGAA 1 cut(s) 112
Bsp143I GATC 1 cut(s) 148
BspCNI CTCAG 2 cut(s) 165, 186
BspMAI CTGCAG 1 cut(s) 124
BspT104I TTCGAA 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 1 cut(s) 148
BssT1I CCWWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 61
BstBI TTCGAA 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 2 cut(s) 152, 173
BstF5I GGATG 1 cut(s) 226
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 106, 134
BtsCI GGATG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 97
CfoI GCGC 1 cut(s) 179
CviAII CATG 1 cut(s) 184
CviJI RGCY 3 cut(s) 95, 119, 156
CviKI_1 RGCY 3 cut(s) 95, 119, 156
DdeI CTNAG 2 cut(s) 152, 173
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 1 cut(s) 187
FaiI YATR 3 cut(s) 185, 216, 218
FatI CATG 1 cut(s) 183
Fnu4HI GCNGC 2 cut(s) 120, 123
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 120, 123
GlaI GCGC 1 cut(s) 178
GluI GCNGC 2 cut(s) 120, 123
HhaI GCGC 1 cut(s) 179
Hin1II CATG 1 cut(s) 187
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
Hpy166II GTNNAC 1 cut(s) 50
Hpy8I GTNNAC 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 152, 173
Hsp92II CATG 1 cut(s) 187
HspAI GCGC 1 cut(s) 177
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 2 cut(s) 61, 90
Lsp1109I GCAGC 2 cut(s) 106, 134
MaeIII GTNAC 1 cut(s) 3
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 2 cut(s) 41, 220
MluCI AATT 3 cut(s) 32, 82, 187
MnlI CCTC 3 cut(s) 77, 217, 233
MseI TTAA 2 cut(s) 56, 231
NdeII GATC 1 cut(s) 148
NlaIII CATG 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 3
NspV TTCGAA 1 cut(s) 112
PkrI GCNGC 2 cut(s) 121, 124
PstI CTGCAG 1 cut(s) 124
SaqAI TTAA 2 cut(s) 56, 231
SatI GCNGC 2 cut(s) 120, 123
Sau3AI GATC 1 cut(s) 148
SetI ASST 4 cut(s) 97, 158, 165, 244
SfcI CTRYAG 1 cut(s) 120
SfuI TTCGAA 1 cut(s) 112
Sse9I AATT 3 cut(s) 32, 82, 187
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 69, 112
TasI AATT 3 cut(s) 32, 82, 187
Tru1I TTAA 2 cut(s) 56, 231
Tru9I TTAA 2 cut(s) 56, 231
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 2 cut(s) 119, 122
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 200
TspGWI ACGGA 1 cut(s) 41
XapI RAATTY 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.