Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Forward (+)

25695507 .. 25696716

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1188000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGTGGTTTGGATTTGGGCAACAATTACGTTGCTTACAGTTGTTCACATCCTGCGAGCATGGATATGGAAAAGCAATAACAAGAAGATGTTACCTCCTGGTCCAAGAGGGTTTCCTATTTTCGGCAGCCTCTACTCGTTGGGGCAGTTCCCAAACAAAGATCTTCATCGGCTAGCCCAAAAATACGGCGATATCATGTACCTGCGGTTAGGTCTTATGCCTACCATTGTTGTCTCATCCCCACAAGCGGCTGAGCTGTTCCTCAAAACACATGACCTTGTTTTTGCAAGTAGGCCACCTCATGAGGGTGCAAAACACATATCCTTTGGGCAAAGAAACGTGAGCTTTGCTGAGTATGGCTCATATTGGCGTGACATCCGAAAGATGTGCACACTTGAATTACTAAGCAACCACAAAATCAACTCTTTCAAGTCTATGAGGAAAGAAGAGGTTGCTCTCTTAATTCAATCTATTAAAGAGGCTGCCAATAATCGACATGTTGTTATCGATCTCAGTGACATGGTCTCAACTTTTAGTGTTGACATGAGCTGTCGGATGGTGATTGGGAAGAAGTACAAGGATGAAGAGTTTGACGATAGGGGTTTCAAGTCTGTTGTTAACAAGGCATTTGATAAATTTTTTGAGAAGGTAATTGGTGAGCATCTTCAATCCAAGGATGAAGAAAGACCGAAGGACTTTGTTGATGCCATGGTGGCGTTCATGTTCTCTGAAGAATCTGACTACCGAATCGAACGCTCCGATATCAAAGCTATATTGTTGGACATGCTTGCGGCCTCAATGGACACATCATCAACATCGATTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

276

Amino Acids

31.61

Weight (kDa)

8.38

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	32 - 197	1.5e-26	Cytochrome P450
p450	PF00067	207 - 274	1.3e-07	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	210
AciI	CCGC	3 cut(s)	205, 248, 791
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	750
AfaI	GTAC	2 cut(s)	200, 575
AfiI	CCNNNNNNNGG	3 cut(s)	122, 247, 305
AflIII	ACRYGT	1 cut(s)	496
AgsI	TTSAA	5 cut(s)	398, 430, 467, 607, 668
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	4 cut(s)	256, 345, 549, 770
AluI	AGCT	4 cut(s)	256, 345, 549, 770
Alw21I	GWGCWC	1 cut(s)	392
Alw26I	GTCTC	2 cut(s)	238, 529
Alw44I	GTGCAC	1 cut(s)	388
AoxI	GGCC	2 cut(s)	293, 792
ApaLI	GTGCAC	1 cut(s)	388
ApeKI	GCWGC	2 cut(s)	126, 482
ApoI	RAATTY	1 cut(s)	635
ArsI	GACNNNNNNTTYG	2 cut(s)	266, 298
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	2 cut(s)	571, 668
AsuNHI	GCTAGC	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	2 cut(s)	138, 469
BccI	CCATC	1 cut(s)	550
BceAI	ACGGC	1 cut(s)	202
BcgI	CGANNNNNNTGC	2 cut(s)	369, 403
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	238, 529
BfaI	CTAG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	210
BglI	GCCNNNNNGGC	1 cut(s)	713
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	4 cut(s)	127, 249, 483, 792
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	4 cut(s)	128, 250, 484, 793
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	2 cut(s)	670, 694
BmtI	GCTAGC	1 cut(s)	176
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
Bpu1102I	GCTNAGC	1 cut(s)	252
Bsa29I	ATCGAT	2 cut(s)	507, 818
BsaBI	GATNNNNATC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	529
BsaJI	CCNNGG	2 cut(s)	672, 708
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 247, 305
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	99
BseCI	ATCGAT	2 cut(s)	507, 818
BseDI	CCNNGG	2 cut(s)	672, 708
BseGI	GGATG	6 cut(s)	48, 236, 375, 561, 586, 682
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	3 cut(s)	122, 247, 305
BseMII	CTCAG	3 cut(s)	243, 342, 526
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	138, 469
BshFI	GGCC	2 cut(s)	295, 794
BshVI	ATCGAT	2 cut(s)	507, 818
BsiHKAI	GWGCWC	1 cut(s)	392
BslI	CCNNNNNNNGG	3 cut(s)	122, 247, 305
BsmAI	GTCTC	2 cut(s)	238, 529
BsnI	GGCC	2 cut(s)	295, 794
Bso31I	GGTCTC	1 cut(s)	529
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	2 cut(s)	160, 508
Bsp1720I	GCTNAGC	1 cut(s)	252
Bsp19I	CCATGG	1 cut(s)	708
BspACI	CCGC	3 cut(s)	205, 248, 791
BspANI	GGCC	2 cut(s)	295, 794
BspCNI	CTCAG	3 cut(s)	244, 343, 525
BspDI	ATCGAT	2 cut(s)	507, 818
BspHI	TCATGA	1 cut(s)	301
BspMI	ACCTGC	1 cut(s)	210
BspOI	GCTAGC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	529
BssECI	CCNNGG	2 cut(s)	672, 708
BssMI	GATC	2 cut(s)	160, 508
BssT1I	CCWWGG	2 cut(s)	672, 708
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	2 cut(s)	441, 579
BstC8I	GCNNGC	3 cut(s)	57, 174, 789
BstDEI	CTNAG	4 cut(s)	252, 351, 404, 512
BstDSI	CCRYGG	1 cut(s)	708
BstF5I	GGATG	6 cut(s)	48, 236, 375, 561, 586, 682
BstKTI	GATC	2 cut(s)	163, 511
BstMAI	GTCTC	2 cut(s)	238, 529
BstMBI	GATC	2 cut(s)	160, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	713
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	2 cut(s)	500, 787
BstSCI	CCNGG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	392
BstV1I	GCAGC	2 cut(s)	138, 469
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
Bsu15I	ATCGAT	2 cut(s)	507, 818
BsuRI	GGCC	2 cut(s)	295, 794
BsuTUI	ATCGAT	2 cut(s)	507, 818
BtgI	CCRYGG	1 cut(s)	708
BtsCI	GGATG	6 cut(s)	48, 236, 375, 561, 586, 682
BtsIMutI	CAGTG	1 cut(s)	520
BveI	ACCTGC	1 cut(s)	210
Cac8I	GCNNGC	3 cut(s)	57, 174, 789
CciI	TCATGA	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	101
ClaI	ATCGAT	2 cut(s)	507, 818
Csp6I	GTAC	2 cut(s)	199, 574
CviQI	GTAC	2 cut(s)	199, 574
DdeI	CTNAG	4 cut(s)	252, 351, 404, 512
DpnI	GATC	2 cut(s)	162, 510
DpnII	GATC	2 cut(s)	160, 508
Eam1104I	CTCTTC	2 cut(s)	441, 579
EarI	CTCTTC	2 cut(s)	441, 579
Eco130I	CCWWGG	2 cut(s)	672, 708
Eco31I	GGTCTC	1 cut(s)	529
Eco32I	GATATC	2 cut(s)	193, 763
Eco47I	GGWCC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	750
EcoRII	CCWGG	1 cut(s)	97
EcoRV	GATATC	2 cut(s)	193, 763
EcoT14I	CCWWGG	2 cut(s)	672, 708
ErhI	CCWWGG	2 cut(s)	672, 708
Fnu4HI	GCNGC	4 cut(s)	127, 249, 483, 792
FokI	GGATG	6 cut(s)	35, 223, 362, 568, 593, 689
Fsp4HI	GCNGC	4 cut(s)	127, 249, 483, 792
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	4 cut(s)	127, 249, 483, 792
HaeIII	GGCC	2 cut(s)	295, 794
HincII	GTYRAC	2 cut(s)	541, 619
HindII	GTYRAC	2 cut(s)	541, 619
HinfI	GANTC	2 cut(s)	734, 747
HpaI	GTTAAC	1 cut(s)	619
HphI	GGTGA	2 cut(s)	571, 668
Hpy166II	GTNNAC	4 cut(s)	46, 390, 541, 619
Hpy188I	TCNGA	5 cut(s)	380, 555, 730, 739, 760
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	4 cut(s)	46, 390, 541, 619
HpyAV	CCTTC	2 cut(s)	640, 685
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	2 cut(s)	29, 339
HpyCH4V	TGCA	3 cut(s)	287, 311, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	713
HpyF3I	CTNAG	4 cut(s)	252, 351, 404, 512
HpySE526I	ACGT	2 cut(s)	29, 339
KspAI	GTTAAC	1 cut(s)	619
Kzo9I	GATC	2 cut(s)	160, 508
LmnI	GCTCC	1 cut(s)	761
LpnPI	CCDG	4 cut(s)	65, 84, 111, 215
Lsp1109I	GCAGC	2 cut(s)	138, 469
LweI	GCATC	2 cut(s)	670, 694
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	2 cut(s)	29, 339
MaeIII	GTNAC	3 cut(s)	90, 371, 515
MalI	GATC	2 cut(s)	162, 510
MboI	GATC	2 cut(s)	160, 508
MboII	GAAGA	8 cut(s)	97, 155, 458, 580, 596, 656, 692, 743
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	5 cut(s)	24, 398, 462, 635, 651
MmeI	TCCRAC	2 cut(s)	533, 759
MseI	TTAA	3 cut(s)	461, 474, 618
MslI	CAYNNNNRTG	2 cut(s)	64, 306
MspR9I	CCNGG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	713
NcoI	CCATGG	1 cut(s)	708
NdeII	GATC	2 cut(s)	160, 508
NheI	GCTAGC	1 cut(s)	172
NmuCI	GTSAC	2 cut(s)	371, 515
NspI	RCATGY	2 cut(s)	500, 787
PagI	TCATGA	1 cut(s)	301
PciI	ACATGT	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	756
PfeI	GAWTC	2 cut(s)	734, 747
PflFI	GACNNNGTC	1 cut(s)	521
PkrI	GCNGC	4 cut(s)	128, 250, 484, 793
PscI	ACATGT	1 cut(s)	496
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	160
PsyI	GACNNNGTC	1 cut(s)	521
RsaI	GTAC	2 cut(s)	200, 575
RsaNI	GTAC	2 cut(s)	199, 574
RseI	CAYNNNNRTG	2 cut(s)	64, 306
SaqAI	TTAA	3 cut(s)	461, 474, 618
SatI	GCNGC	4 cut(s)	127, 249, 483, 792
Sau3AI	GATC	2 cut(s)	160, 508
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	392
SfaNI	GCATC	2 cut(s)	670, 694
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	2 cut(s)	64, 306
Sse9I	AATT	5 cut(s)	24, 398, 462, 635, 651
SsiI	CCGC	3 cut(s)	205, 248, 791
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	2 cut(s)	672, 708
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	2 cut(s)	32, 342
TaqI	TCGA	4 cut(s)	493, 507, 750, 818
TaqII	GACCGA	1 cut(s)	703
TasI	AATT	5 cut(s)	24, 398, 462, 635, 651
TatI	WGTACW	1 cut(s)	573
TauI	GCSGC	2 cut(s)	251, 794
TfiI	GAWTC	2 cut(s)	734, 747
Tru1I	TTAA	3 cut(s)	461, 474, 618
Tru9I	TTAA	3 cut(s)	461, 474, 618
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	2 cut(s)	371, 515
TseI	GCWGC	2 cut(s)	126, 482
Tsp45I	GTSAC	2 cut(s)	371, 515
TspDTI	ATGAA	4 cut(s)	155, 597, 693, 709
TspRI	CASTG	1 cut(s)	520
Tth111I	GACNNNGTC	1 cut(s)	521
VneI	GTGCAC	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	101
XapI	RAATTY	1 cut(s)	635
XceI	RCATGY	2 cut(s)	500, 787
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.