Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Forward (+)

37819248 .. 37819502

Gene Structure 255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57183

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGACCTGCAGGATGGTGTTTGGGAAGAAATACATGGATGAGGAATCTAGTGAGAGGGGTTTTAAATCCGTGATTCAAGAAGGCTTGCAGTTAGGAGCTGCCCCTAACTTGGGAGATTACATTCCTTGCATTGCTCCACTCGATCTCCAAGGATTCACTAAACGAATGAAGGTTGTTCACAGGGTCTTTGATGACTTTTTGGAGAAGATTGTGGAGGAGCATCTTCAATCTAGGGATCAAGGAGAAAGTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

84

Amino Acids

9.58

Weight (kDa)

5.29

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	109, 110
AgsI	TTSAA	2 cut(s)	77, 227
AluBI	AGCT	2 cut(s)	98, 252
AluI	AGCT	2 cut(s)	98, 252
AlwI	GGATC	1 cut(s)	243
ApeKI	GCWGC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	1 cut(s)	7
BfaI	CTAG	3 cut(s)	48, 231, 253
BfmI	CTRYAG	1 cut(s)	7
BfuAI	ACCTGC	1 cut(s)	14
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BmsI	GCATC	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 110
Bse3DI	GCAATG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	2 cut(s)	18, 43
BseLI	CCNNNNNNNGG	2 cut(s)	109, 110
BseMI	GCAATG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	109, 110
Bsp143I	GATC	2 cut(s)	142, 235
BspMAI	CTGCAG	1 cut(s)	11
BspMI	ACCTGC	1 cut(s)	14
BspPI	GGATC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	2 cut(s)	142, 235
BssT1I	CCWWGG	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	86
BstF5I	GGATG	2 cut(s)	18, 43
BstKTI	GATC	2 cut(s)	145, 238
BstMBI	GATC	2 cut(s)	142, 235
BstSFI	CTRYAG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	18, 43
BveI	ACCTGC	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	86
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	3 cut(s)	84, 98, 252
CviKI_1	RGCY	3 cut(s)	84, 98, 252
DpnI	GATC	2 cut(s)	144, 237
DpnII	GATC	2 cut(s)	142, 235
DraI	TTTAAA	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	1 cut(s)	37
FaiI	YATR	1 cut(s)	35
FatI	CATG	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	2 cut(s)	25, 50
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	3 cut(s)	48, 231, 253
GluI	GCNGC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	37
HinfI	GANTC	3 cut(s)	44, 73, 153
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	2 cut(s)	74, 163
HpyCH4V	TGCA	3 cut(s)	9, 88, 129
Hsp92II	CATG	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	142, 235
LmnI	GCTCC	3 cut(s)	95, 139, 217
LpnPI	CCDG	2 cut(s)	19, 166
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	3 cut(s)	48, 231, 253
MalI	GATC	2 cut(s)	144, 237
MboI	GATC	2 cut(s)	142, 235
MboII	GAAGA	3 cut(s)	37, 215, 217
MnlI	CCTC	3 cut(s)	34, 48, 208
MseI	TTAA	1 cut(s)	63
NdeII	GATC	2 cut(s)	142, 235
NlaIII	CATG	1 cut(s)	37
PfeI	GAWTC	3 cut(s)	44, 73, 153
PkrI	GCNGC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	142, 235
SbfI	CCTGCAGG	1 cut(s)	11
SdaI	CCTGCAGG	1 cut(s)	11
SetI	ASST	4 cut(s)	8, 100, 174, 254
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	7
Sse8387I	CCTGCAGG	1 cut(s)	11
SspMI	CTAG	3 cut(s)	48, 231, 253
StyI	CCWWGG	1 cut(s)	148
TaqI	TCGA	1 cut(s)	141
TfiI	GAWTC	3 cut(s)	44, 73, 153
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	182
TspGWI	ACGGA	1 cut(s)	58
XspI	CTAG	3 cut(s)	48, 231, 253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.