Rh5CG326500

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
36237051 .. 36241124
4074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG326500.1

Sequence Viewer

Length: 1131 bp
ATGATGGTTTGGATTTGGGCAGTAATAATTGCATCGCTTGCTGTTGTTTATGTTCTGGAACCATGGAGAAGCAAGAAGAAGAGGTTACCTCCCGGTCCAAGAGGGTTTCCTATTTTCGGAAGCCTCAACTTGTTAGGGGAGTTTCCTTACAAAGACCTACACAGACTGGCTCAAAAGTATGGCGACATCATGCACATGCGTTTAGGCCTCGTGTCTGCCATCGTCGTCTCCTCCCCTCAAGCTGCTGAGCTCTTCCTCAAGACCCACGACCTCGTTTTCGCAAGCAGGCCACCTCACGAAGGCGCAAAGCACATCTCTTTCGGGCAGAGGAATTTGAGCTTTTCCAAGTATGGATCTTATTGGCGAGACATGCGCAAGATGTGCACCCTCGAGTTGCTCAGCAACCACAAAATCAATTCTTTCAAGGAAATGAGGAGAGAAGAGGTTGCTCTTTTCATAGAGGCCATTAAAGAGGCAGCTGCAACCAGCCACGAACCAGTCAATCTCAGCGCTAAGGTGTCATCTCTTAGTACGGATATGAGCTGCAGGATGGTGTTTGGGAAGAAGTACGCGGATAAGGAATTCGACGACAAGGGTTTCAAGTCTGTGATTCAACAAGGCTTGCAATTAGCAGCTGCACCTAACTTGGGGGATTACATCCCTTGTATTGCTCCACTTGACCTCCAAGGGTTCACTAAGCGCATGAAGGCCGTTAACAAGGTGTTTGATGACTTTTTCGAGAAGATTATTGATGAACATCTTCAATCGAGGGATGAGGGAAAGACGAAGGACTTTGTTGATGTAATGCTCAGCTTTATGGGGACTCAAGAATCTGAATACCTAATTGAACGCTCCAATATCAAAGCAATTATTTTGGACATGCTTGTGGGCTCAATGGACACATCAGCAACAACAATTGAGTGGGCCCTCTCTGAACTCATAAGACATCCACAACTAATGAAGAAGCTCAAGATACAAGCCTTGAGCTGTATCTCCGGAAGAGACTCCAACCAATTCGGGAAAGTTACAGCTCAAGAACCTGTAACTCCGGAAGAGACTCCAACCAATTCGGGAAAGTATCGTTTAGCTTGTTGTCTCCCAAGTCTAGAACTTCCATCTTTCTGCAATTGA

Protein Analysis

376

Amino Acids

42.44

Weight (kDa)

8.68

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 30 - 331 3.1e-51 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 374
AccII CGCG 1 cut(s) 572
AccIII TCCGGA 2 cut(s) 995, 1048
AciI CCGC 1 cut(s) 572
AclWI GGATC 1 cut(s) 361
AcsI RAATTY 2 cut(s) 331, 581
AfaI GTAC 2 cut(s) 532, 569
AfeI AGCGCT 1 cut(s) 511
AfiI CCNNNNNNNGG 3 cut(s) 116, 299, 647
AgsI TTSAA 5 cut(s) 424, 601, 614, 764, 848
Alw21I GWGCWC 2 cut(s) 252, 386
Alw26I GTCTC 5 cut(s) 232, 360, 996, 1049, 1100
Alw44I GTGCAC 1 cut(s) 382
AlwI GGATC 1 cut(s) 361
Ama87I CYCGRG 1 cut(s) 389
Aor13HI TCCGGA 2 cut(s) 995, 1048
Aor51HI AGCGCT 1 cut(s) 511
AoxI GGCC 5 cut(s) 205, 287, 462, 708, 924
ApaI GGGCCC 1 cut(s) 928
ApaLI GTGCAC 1 cut(s) 382
ApeKI GCWGC 6 cut(s) 242, 476, 479, 543, 632, 635
ApoI RAATTY 2 cut(s) 331, 581
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
Asp700I GAANNNNTTC 1 cut(s) 759
AspLEI GCGC 4 cut(s) 305, 375, 512, 702
AspS9I GGNCC 3 cut(s) 95, 924, 925
AsuC2I CCSGG 1 cut(s) 93
AvaI CYCGRG 1 cut(s) 389
AvaII GGWCC 1 cut(s) 95
BaeGI GKGCMC 2 cut(s) 386, 928
BanII GRGCYC 3 cut(s) 252, 893, 928
BauI CACGAG 1 cut(s) 209
Bbv12I GWGCWC 2 cut(s) 252, 386
BbvI GCAGC 6 cut(s) 229, 466, 488, 530, 622, 644
BccI CCATC 3 cut(s) 227, 544, 1123
BceAI ACGGC 1 cut(s) 695
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 5 cut(s) 232, 360, 996, 1049, 1100
BfaI CTAG 1 cut(s) 1106
BfmI CTRYAG 1 cut(s) 544
BfoI RGCGCY 1 cut(s) 513
BisI GCNGC 6 cut(s) 243, 477, 480, 544, 633, 636
BlpI GCTNAGC 3 cut(s) 246, 398, 809
BlsI GCNGC 6 cut(s) 244, 478, 481, 545, 634, 637
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 389
BmgT120I GGNCC 3 cut(s) 95, 924, 925
BmiI GGNNCC 2 cut(s) 60, 926
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 1 cut(s) 41
BplI GAGNNNNNCTC 2 cut(s) 73, 105
Bpu10I CCTNAGC 1 cut(s) 513
Bpu1102I GCTNAGC 3 cut(s) 246, 398, 809
BpuEI CTTGAG 6 cut(s) 222, 242, 810, 953, 1003, 1017
BpuMI CCSGG 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 756
BsaJI CCNNGG 2 cut(s) 62, 685
BsaWI WCCGGW 2 cut(s) 995, 1048
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 299, 647
Bse1I ACTGG 2 cut(s) 171, 497
Bse8I GATNNNNATC 1 cut(s) 756
BseAI TCCGGA 2 cut(s) 995, 1048
BseDI CCNNGG 2 cut(s) 62, 685
BseGI GGATG 4 cut(s) 555, 657, 778, 946
BseJI GATNNNNATC 1 cut(s) 756
BseLI CCNNNNNNNGG 3 cut(s) 116, 299, 647
BseMII CTCAG 4 cut(s) 237, 412, 520, 823
BseNI ACTGG 2 cut(s) 171, 497
BseRI GAGGAG 2 cut(s) 220, 448
BseSI GKGCMC 2 cut(s) 386, 928
BseXI GCAGC 6 cut(s) 229, 466, 488, 530, 622, 644
BsgI GTGCAG 1 cut(s) 621
Bsh1236I CGCG 1 cut(s) 572
BshFI GGCC 5 cut(s) 207, 289, 464, 710, 926
BsiHKAI GWGCWC 2 cut(s) 252, 386
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 3 cut(s) 93, 996, 1049
BslFI GGGAC 1 cut(s) 835
BslI CCNNNNNNNGG 3 cut(s) 116, 299, 647
BsmAI GTCTC 5 cut(s) 232, 360, 996, 1049, 1100
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 835
BsnI GGCC 5 cut(s) 207, 289, 464, 710, 926
BsoBI CYCGRG 1 cut(s) 389
Bsp120I GGGCCC 1 cut(s) 924
Bsp1286I GDGCHC 4 cut(s) 252, 386, 893, 928
Bsp13I TCCGGA 2 cut(s) 995, 1048
Bsp143I GATC 1 cut(s) 353
Bsp1720I GCTNAGC 3 cut(s) 246, 398, 809
Bsp19I CCATGG 1 cut(s) 62
BspACI CCGC 1 cut(s) 572
BspANI GGCC 5 cut(s) 207, 289, 464, 710, 926
BspCNI CTCAG 4 cut(s) 238, 411, 519, 822
BspEI TCCGGA 2 cut(s) 995, 1048
BspFNI CGCG 1 cut(s) 572
BspLI GGNNCC 2 cut(s) 60, 926
BspMAI CTGCAG 1 cut(s) 548
BspPI GGATC 1 cut(s) 361
BspQI GCTCTTC 1 cut(s) 257
BsrI ACTGG 2 cut(s) 171, 497
BssECI CCNNGG 2 cut(s) 62, 685
BssMI GATC 1 cut(s) 353
BssSI CACGAG 1 cut(s) 209
BssT1I CCWWGG 2 cut(s) 62, 685
Bst2BI CACGAG 1 cut(s) 209
Bst6I CTCTTC 5 cut(s) 74, 257, 435, 994, 1047
BstAPI GCANNNNNTGC 2 cut(s) 38, 381
BstC8I GCNNGC 4 cut(s) 39, 283, 287, 623
BstDEI CTNAG 7 cut(s) 246, 398, 506, 513, 527, 696, 809
BstDSI CCRYGG 1 cut(s) 62
BstEII GGTNACC 1 cut(s) 84
BstENI CCTNNNNNAGG 1 cut(s) 297
BstF5I GGATG 4 cut(s) 555, 657, 778, 946
BstFNI CGCG 1 cut(s) 572
BstH2I RGCGCY 1 cut(s) 513
BstHHI GCGC 4 cut(s) 305, 375, 512, 702
BstKTI GATC 1 cut(s) 356
BstMAI GTCTC 5 cut(s) 232, 360, 996, 1049, 1100
BstMBI GATC 1 cut(s) 353
BstMWI GCNNNNNNNGC 3 cut(s) 38, 370, 381
BstNSI RCATGY 3 cut(s) 199, 373, 883
BstPI GGTNACC 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 544
BstSLI GKGCMC 2 cut(s) 386, 928
BstUI CGCG 1 cut(s) 572
BstV1I GCAGC 6 cut(s) 229, 466, 488, 530, 622, 644
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuRI GGCC 5 cut(s) 207, 289, 464, 710, 926
BtgI CCRYGG 1 cut(s) 62
BtgZI GCGATG 1 cut(s) 18
BtsCI GGATG 4 cut(s) 555, 657, 778, 946
Cac8I GCNNGC 4 cut(s) 39, 283, 287, 623
CfoI GCGC 4 cut(s) 305, 375, 512, 702
Cfr13I GGNCC 3 cut(s) 95, 924, 925
Csp6I GTAC 2 cut(s) 531, 568
CviAII CATG 6 cut(s) 63, 190, 196, 370, 703, 880
CviQI GTAC 2 cut(s) 531, 568
DdeI CTNAG 7 cut(s) 246, 398, 506, 513, 527, 696, 809
DpnI GATC 1 cut(s) 355
DpnII GATC 1 cut(s) 353
Eam1104I CTCTTC 5 cut(s) 74, 257, 435, 994, 1047
EarI CTCTTC 5 cut(s) 74, 257, 435, 994, 1047
Ecl136II GAGCTC 1 cut(s) 250
Eco130I CCWWGG 2 cut(s) 62, 685
Eco147I AGGCCT 1 cut(s) 207
Eco24I GRGCYC 3 cut(s) 252, 893, 928
Eco47I GGWCC 1 cut(s) 95
Eco47III AGCGCT 1 cut(s) 511
Eco53kI GAGCTC 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 389
Eco91I GGTNACC 1 cut(s) 84
EcoICRI GAGCTC 1 cut(s) 250
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 925
EcoO65I GGTNACC 1 cut(s) 84
EcoRI GAATTC 1 cut(s) 581
EcoT14I CCWWGG 2 cut(s) 62, 685
EcoT38I GRGCYC 3 cut(s) 252, 893, 928
ErhI CCWWGG 2 cut(s) 62, 685
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 6 cut(s) 66, 193, 199, 373, 706, 883
FaqI GGGAC 1 cut(s) 835
FatI CATG 6 cut(s) 62, 189, 195, 369, 702, 879
Fnu4HI GCNGC 6 cut(s) 243, 477, 480, 544, 633, 636
FokI GGATG 4 cut(s) 562, 644, 785, 933
FriOI GRGCYC 3 cut(s) 252, 893, 928
Fsp4HI GCNGC 6 cut(s) 243, 477, 480, 544, 633, 636
FspBI CTAG 1 cut(s) 1106
FspI TGCGCA 1 cut(s) 374
GlaI GCGC 4 cut(s) 304, 374, 511, 701
GluI GCNGC 6 cut(s) 243, 477, 480, 544, 633, 636
HaeII RGCGCY 1 cut(s) 513
HaeIII GGCC 5 cut(s) 207, 289, 464, 710, 926
HapII CCGG 3 cut(s) 93, 996, 1049
HhaI GCGC 4 cut(s) 305, 375, 512, 702
Hin1II CATG 6 cut(s) 66, 193, 199, 373, 706, 883
Hin6I GCGC 4 cut(s) 303, 373, 510, 700
HinP1I GCGC 4 cut(s) 303, 373, 510, 700
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HinfI GANTC 5 cut(s) 610, 823, 830, 1004, 1057
HpaI GTTAAC 1 cut(s) 715
HpaII CCGG 3 cut(s) 93, 996, 1049
Hpy166II GTNNAC 3 cut(s) 384, 693, 715
Hpy188I TCNGA 3 cut(s) 119, 835, 934
Hpy8I GTNNAC 3 cut(s) 384, 693, 715
Hpy99I CGWCG 2 cut(s) 227, 590
HpyAV CCTTC 3 cut(s) 293, 700, 781
HpyCH4V TGCA 8 cut(s) 32, 193, 384, 482, 546, 625, 638, 1125
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 370, 381
HpyF3I CTNAG 7 cut(s) 246, 398, 506, 513, 527, 696, 809
Hsp92II CATG 6 cut(s) 66, 193, 199, 373, 706, 883
HspAI GCGC 4 cut(s) 303, 373, 510, 700
Kpn2I TCCGGA 2 cut(s) 995, 1048
KspAI GTTAAC 1 cut(s) 715
Kzo9I GATC 1 cut(s) 353
LguI GCTCTTC 1 cut(s) 257
LmnI GCTCC 2 cut(s) 676, 857
Lsp1109I GCAGC 6 cut(s) 229, 466, 488, 530, 622, 644
LweI GCATC 1 cut(s) 41
MaeI CTAG 1 cut(s) 1106
MaeIII GTNAC 3 cut(s) 84, 1024, 1042
MalI GATC 1 cut(s) 355
MboI GATC 1 cut(s) 353
MfeI CAATTG 2 cut(s) 915, 1126
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 4 cut(s) 252, 386, 893, 928
MlyI GAGTC 3 cut(s) 817, 998, 1051
MmeI TCCRAC 2 cut(s) 1032, 1085
MroI TCCGGA 2 cut(s) 995, 1048
MroXI GAANNNNTTC 1 cut(s) 759
MseI TTAA 2 cut(s) 468, 714
MslI CAYNNNNRTG 2 cut(s) 194, 884
MspA1I CMGCKG 2 cut(s) 479, 635
MspI CCGG 3 cut(s) 93, 996, 1049
MspR9I CCNGG 1 cut(s) 93
MunI CAATTG 2 cut(s) 915, 1126
MvnI CGCG 1 cut(s) 572
MwoI GCNNNNNNNGC 3 cut(s) 38, 370, 381
NciI CCSGG 1 cut(s) 93
NcoI CCATGG 1 cut(s) 62
NdeII GATC 1 cut(s) 353
NlaIII CATG 6 cut(s) 66, 193, 199, 373, 706, 883
NlaIV GGNNCC 2 cut(s) 60, 926
NsbI TGCGCA 1 cut(s) 374
NspI RCATGY 3 cut(s) 199, 373, 883
PaeR7I CTCGAG 1 cut(s) 389
PceI AGGCCT 1 cut(s) 207
PciSI GCTCTTC 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 759
PfeI GAWTC 2 cut(s) 610, 830
PkrI GCNGC 6 cut(s) 244, 478, 481, 545, 634, 637
PleI GAGTC 3 cut(s) 817, 998, 1051
PpsI GAGTC 3 cut(s) 817, 998, 1051
Psp124BI GAGCTC 1 cut(s) 252
PspEI GGTNACC 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 60, 926
PspOMI GGGCCC 1 cut(s) 924
PspPI GGNCC 3 cut(s) 95, 924, 925
PspXI VCTCGAGB 1 cut(s) 389
PstI CTGCAG 1 cut(s) 548
PsuI RGATCY 1 cut(s) 353
PvuII CAGCTG 2 cut(s) 479, 635
RsaI GTAC 2 cut(s) 532, 569
RsaNI GTAC 2 cut(s) 531, 568
RseI CAYNNNNRTG 2 cut(s) 194, 884
SacI GAGCTC 1 cut(s) 252
SapI GCTCTTC 1 cut(s) 257
SaqAI TTAA 2 cut(s) 468, 714
SatI GCNGC 6 cut(s) 243, 477, 480, 544, 633, 636
Sau3AI GATC 1 cut(s) 353
Sau96I GGNCC 3 cut(s) 95, 924, 925
SchI GAGTC 3 cut(s) 817, 998, 1051
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 4 cut(s) 252, 386, 893, 928
SfaNI GCATC 1 cut(s) 41
SfcI CTRYAG 1 cut(s) 544
Sfr274I CTCGAG 1 cut(s) 389
SinI GGWCC 1 cut(s) 95
SlaI CTCGAG 1 cut(s) 389
SmiMI CAYNNNNRTG 2 cut(s) 194, 884
SmlI CTYRAG 7 cut(s) 237, 257, 389, 825, 968, 982, 1032
SmoI CTYRAG 7 cut(s) 237, 257, 389, 825, 968, 982, 1032
SseBI AGGCCT 1 cut(s) 207
SsiI CCGC 1 cut(s) 572
SspMI CTAG 1 cut(s) 1106
SstI GAGCTC 1 cut(s) 252
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 2 cut(s) 62, 685
TaqI TCGA 4 cut(s) 390, 585, 738, 767
TfiI GAWTC 2 cut(s) 610, 830
Tru1I TTAA 2 cut(s) 468, 714
Tru9I TTAA 2 cut(s) 468, 714
TseI GCWGC 6 cut(s) 242, 476, 479, 543, 632, 635
TspDTI ATGAA 4 cut(s) 445, 719, 768, 974
TspGWI ACGGA 1 cut(s) 548
VneI GTGCAC 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 95
XagI CCTNNNNNAGG 1 cut(s) 297
XapI RAATTY 2 cut(s) 331, 581
XbaI TCTAGA 1 cut(s) 1105
XceI RCATGY 3 cut(s) 199, 373, 883
XhoI CTCGAG 1 cut(s) 389
XmnI GAANNNNTTC 1 cut(s) 759
XspI CTAG 1 cut(s) 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.