Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000698.1

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Reverse (-)

500030 .. 500356

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000698.1_g000124.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgatggtttggaattgggcagtaataattgcattgcttgctgttgtttatgttctggaaccatggagaagcaagaagaagaggttacctcctggtctaagagggtttcctattttaggaagcctcaacttgttaggggagtttccttacaaagacctgcacagactggctcaaaagtatggtgacatcatgcacatgcgtttaggcctcgtgtctgccatcgtcatctcctcccctcaagctgctgagctcttcctcaagacccacgaccttgttttcgcaagcaggccacctcacgaaggcgcaaagcacatctctttcgggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

108

Amino Acids

12.17

Weight (kDa)

9.99

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	165
AfiI	CCNNNNNNNGG	2 cut(s)	116, 299
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	2 cut(s)	242, 250
AluI	AGCT	2 cut(s)	242, 250
Alw21I	GWGCWC	1 cut(s)	252
AoxI	GGCC	2 cut(s)	205, 287
ApeKI	GCWGC	1 cut(s)	242
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspLEI	GCGC	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	252
BauI	CACGAG	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	165
BisI	GCNGC	1 cut(s)	243
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	93
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
Bpu1102I	GCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	2 cut(s)	222, 242
BsaJI	CCNNGG	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 299
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	62
BseLI	CCNNNNNNNGG	2 cut(s)	116, 299
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	143
BshFI	GGCC	2 cut(s)	207, 289
BsiHKAI	GWGCWC	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	116, 299
BsnI	GGCC	2 cut(s)	207, 289
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp1720I	GCTNAGC	1 cut(s)	246
Bsp19I	CCATGG	1 cut(s)	62
BspANI	GGCC	2 cut(s)	207, 289
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	165
BspQI	GCTCTTC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	62
BssSI	CACGAG	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	62
Bst2BI	CACGAG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	93
Bst6I	CTCTTC	2 cut(s)	74, 257
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	3 cut(s)	39, 283, 287
BstDEI	CTNAG	2 cut(s)	98, 246
BstDSI	CCRYGG	1 cut(s)	62
BstEII	GGTNACC	1 cut(s)	84
BstENI	CCTNNNNNAGG	2 cut(s)	114, 297
BstHHI	GCGC	1 cut(s)	305
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	199
BstPI	GGTNACC	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	207, 289
BtgI	CCRYGG	1 cut(s)	62
BveI	ACCTGC	1 cut(s)	165
Cac8I	GCNNGC	3 cut(s)	39, 283, 287
CfoI	GCGC	1 cut(s)	305
CviAII	CATG	3 cut(s)	63, 190, 196
CviJI	RGCY	6 cut(s)	123, 170, 207, 242, 250, 289
CviKI_1	RGCY	6 cut(s)	123, 170, 207, 242, 250, 289
DdeI	CTNAG	2 cut(s)	98, 246
Eam1104I	CTCTTC	2 cut(s)	74, 257
EarI	CTCTTC	2 cut(s)	74, 257
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	62
Eco147I	AGGCCT	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	250
Eco91I	GGTNACC	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	250
EcoNI	CCTNNNNNAGG	2 cut(s)	114, 297
EcoO65I	GGTNACC	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	3 cut(s)	66, 193, 199
FaiI	YATR	5 cut(s)	51, 64, 180, 191, 197
FatI	CATG	3 cut(s)	62, 189, 195
Fnu4HI	GCNGC	1 cut(s)	243
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	243
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	207, 289
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	3 cut(s)	66, 193, 199
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HphI	GGTGA	1 cut(s)	194
Hpy188III	TCNNGA	3 cut(s)	56, 259, 296
HpyAV	CCTTC	1 cut(s)	293
HpyCH4V	TGCA	3 cut(s)	32, 160, 193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	2 cut(s)	98, 246
Hsp92II	CATG	3 cut(s)	66, 193, 199
HspAI	GCGC	1 cut(s)	303
LguI	GCTCTTC	1 cut(s)	257
LpnPI	CCDG	6 cut(s)	41, 78, 105, 152, 170, 271
Lsp1109I	GCAGC	1 cut(s)	229
MaeIII	GTNAC	2 cut(s)	84, 182
MboII	GAAGA	3 cut(s)	88, 91, 244
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	2 cut(s)	13, 27
MnlI	CCTC	9 cut(s)	75, 95, 99, 134, 218, 241, 246, 266, 303
MslI	CAYNNNNRTG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	38
NcoI	CCATGG	1 cut(s)	62
NlaIII	CATG	3 cut(s)	66, 193, 199
NlaIV	GGNNCC	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	199
PceI	AGGCCT	1 cut(s)	207
PciSI	GCTCTTC	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	91
PspEI	GGTNACC	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	257
SatI	GCNGC	1 cut(s)	243
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	7 cut(s)	86, 91, 159, 244, 252, 273, 295
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	2 cut(s)	237, 257
SmoI	CTYRAG	2 cut(s)	237, 257
Sse9I	AATT	2 cut(s)	13, 27
SseBI	AGGCCT	1 cut(s)	207
SstI	GAGCTC	1 cut(s)	252
StuI	AGGCCT	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	91
StyI	CCWWGG	1 cut(s)	62
TasI	AATT	2 cut(s)	13, 27
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	182
XagI	CCTNNNNNAGG	2 cut(s)	114, 297
XceI	RCATGY	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.