Rorug01G0177400

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
24332030 .. 24333783
1754 bp
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UTR
Exon/CDS
Intron
Rorug01G0177400.1

Sequence Viewer

Length: 555 bp
ATGAGATTGAAGAGTGGGTACCGAGAACGGAAGAAGGAGGTGATGAAATCCCCAATTACGTACAACAGACAACCTGGTAGGCCAAAAACCAAGAGAATTAAGGATGCTTCAGAGAAAGCTACTGAGGGAACGAAGCTGGGAAGGGTCCAGAAATCATTGAAGTGCAGCAGATGTGGGATTTTGCGGCACAATGTCAAGACCTGTCATAGGCACTTGCCACCTAAGGAGAAGATAAGCAAAAAGAGGAAGCTAGACAGTGGAGAGGACTCCACTAATCAATCTAAGGCTAAGGGTACCAAAAAGCCTCCTCTAACAAAGAATGAGCTTAGGGCCAAAGTTATACAGAAAGCAGAAAAGGTGAAGAATAAGAGGGACGCACATAAGGCAGCAGCAAAAGCTGTTGCAAAAACAACCACTGCTAAAGCAACAACAAAGTCGAGCACTGCTTCAACCACTACACAAGCTGCTAGAGCAAACAGTAAAGCTTCTACCTCTGCAAAGTCTTCAACACCAACAAGATCATCACAGAGGATTAGAGCTGGAAAGGATGCATGA

Protein Analysis

184

Amino Acids

20.25

Weight (kDa)

10.99

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 18, 293
AccB1I GGYRCC 2 cut(s) 18, 293
AciI CCGC 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 3 cut(s) 20, 62, 295
AfiI CCNNNNNNNGG 1 cut(s) 207
AgsI TTSAA 4 cut(s) 10, 160, 450, 507
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 8 cut(s) 119, 136, 250, 325, 398, 464, 485, 539
AluI AGCT 8 cut(s) 119, 136, 250, 325, 398, 464, 485, 539
Alw21I GWGCWC 1 cut(s) 443
AoxI GGCC 2 cut(s) 80, 330
ApeKI GCWGC 4 cut(s) 165, 386, 389, 464
Asp718I GGTACC 2 cut(s) 18, 293
AspS9I GGNCC 2 cut(s) 145, 330
AsuHPI GGTGA 2 cut(s) 52, 370
AvaII GGWCC 1 cut(s) 145
AxyI CCTNAGG 1 cut(s) 222
BanI GGYRCC 2 cut(s) 18, 293
BarI GAAGNNNNNNTAC 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 443
BbvI GCAGC 4 cut(s) 177, 398, 401, 451
BciT130I CCWGG 1 cut(s) 75
BfaI CTAG 2 cut(s) 251, 468
BisI GCNGC 5 cut(s) 166, 185, 387, 390, 465
BlsI GCNGC 5 cut(s) 167, 186, 388, 391, 466
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 145, 330
BmiI GGNNCC 3 cut(s) 20, 146, 295
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 2 cut(s) 94, 538
BpiI GAAGAC 1 cut(s) 495
Bpu10I CCTNAGC 2 cut(s) 288, 326
BsaAI YACGTR 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse21I CCTNAGG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 109, 553
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 297
BseXI GCAGC 4 cut(s) 177, 398, 401, 451
BseYI CCCAGC 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 184
BshFI GGCC 2 cut(s) 82, 332
BshNI GGYRCC 2 cut(s) 18, 293
BsiHKAI GWGCWC 1 cut(s) 443
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 386
BsnI GGCC 2 cut(s) 82, 332
Bsp1286I GDGCHC 1 cut(s) 443
Bsp143I GATC 1 cut(s) 518
BspACI CCGC 1 cut(s) 184
BspANI GGCC 2 cut(s) 82, 332
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 3 cut(s) 20, 146, 295
BspT107I GGYRCC 2 cut(s) 18, 293
BssMI GATC 1 cut(s) 518
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 2 cut(s) 257, 479
Bst6I CTCTTC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 60
BstDEI CTNAG 5 cut(s) 123, 222, 282, 288, 326
BstENI CCTNNNNNAGG 1 cut(s) 205
BstF5I GGATG 2 cut(s) 109, 553
BstKTI GATC 1 cut(s) 521
BstMBI GATC 1 cut(s) 518
BstMWI GCNNNNNNNGC 3 cut(s) 383, 395, 470
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
BstSNI TACGTA 1 cut(s) 60
BstV1I GCAGC 4 cut(s) 177, 398, 401, 451
BstV2I GAAGAC 1 cut(s) 495
Bsu36I CCTNAGG 1 cut(s) 222
BsuRI GGCC 2 cut(s) 82, 332
BtsCI GGATG 2 cut(s) 109, 553
BtsI GCAGTG 2 cut(s) 414, 441
BtsIMutI CAGTG 3 cut(s) 262, 414, 441
Cfr13I GGNCC 2 cut(s) 145, 330
CseI GACGC 1 cut(s) 383
CsiI ACCWGGT 1 cut(s) 73
Csp6I GTAC 3 cut(s) 19, 61, 294
CviAII CATG 1 cut(s) 552
CviQI GTAC 3 cut(s) 19, 61, 294
DdeI CTNAG 5 cut(s) 123, 222, 282, 288, 326
DpnI GATC 1 cut(s) 520
DpnII GATC 1 cut(s) 518
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco105I TACGTA 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 93
Eco81I CCTNAGG 1 cut(s) 222
EcoNI CCTNNNNNAGG 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 553
FaeI CATG 1 cut(s) 555
FaiI YATR 4 cut(s) 207, 341, 381, 553
FaqI GGGAC 1 cut(s) 386
FatI CATG 1 cut(s) 551
Fnu4HI GCNGC 5 cut(s) 166, 185, 387, 390, 465
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 5 cut(s) 166, 185, 387, 390, 465
FspBI CTAG 2 cut(s) 251, 468
GluI GCNGC 5 cut(s) 166, 185, 387, 390, 465
GsaI CCCAGC 1 cut(s) 140
HaeIII GGCC 2 cut(s) 82, 332
HgaI GACGC 1 cut(s) 383
Hin1II CATG 1 cut(s) 555
HindIII AAGCTT 1 cut(s) 483
HinfI GANTC 1 cut(s) 266
HphI GGTGA 2 cut(s) 52, 370
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 2 cut(s) 148, 196
HpyAV CCTTC 2 cut(s) 28, 135
HpyCH4III ACNGT 2 cut(s) 257, 479
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 4 cut(s) 165, 404, 497, 551
HpyF10VI GCNNNNNNNGC 3 cut(s) 383, 395, 470
HpyF3I CTNAG 5 cut(s) 123, 222, 282, 288, 326
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 1 cut(s) 555
KpnI GGTACC 2 cut(s) 22, 297
Kzo9I GATC 1 cut(s) 518
LpnPI CCDG 6 cut(s) 60, 87, 122, 161, 214, 525
Lsp1109I GCAGC 4 cut(s) 177, 398, 401, 451
LweI GCATC 2 cut(s) 94, 538
MabI ACCWGGT 1 cut(s) 73
MaeI CTAG 2 cut(s) 251, 468
MaeII ACGT 1 cut(s) 59
MalI GATC 1 cut(s) 520
MboI GATC 1 cut(s) 518
MboII GAAGA 5 cut(s) 22, 43, 241, 373, 495
MhlI GDGCHC 1 cut(s) 443
MluCI AATT 2 cut(s) 54, 96
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 9 cut(s) 31, 118, 237, 256, 315, 318, 363, 502, 522
Mph1103I ATGCAT 1 cut(s) 553
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 3 cut(s) 383, 395, 470
NdeII GATC 1 cut(s) 518
NlaIII CATG 1 cut(s) 555
NlaIV GGNNCC 3 cut(s) 20, 146, 295
NsiI ATGCAT 1 cut(s) 553
PkrI GCNGC 5 cut(s) 167, 186, 388, 391, 466
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Ppu21I YACGTR 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 73
PspFI CCCAGC 1 cut(s) 136
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 3 cut(s) 20, 146, 295
PspPI GGNCC 2 cut(s) 145, 330
RsaI GTAC 3 cut(s) 20, 62, 295
RsaNI GTAC 3 cut(s) 19, 61, 294
RseI CAYNNNNRTG 1 cut(s) 160
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 5 cut(s) 166, 185, 387, 390, 465
Sau3AI GATC 1 cut(s) 518
Sau96I GGNCC 2 cut(s) 145, 330
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 1 cut(s) 443
SexAI ACCWGGT 1 cut(s) 73
SfaNI GCATC 2 cut(s) 94, 538
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 160
SnaBI TACGTA 1 cut(s) 60
Sse9I AATT 2 cut(s) 54, 96
SsiI CCGC 1 cut(s) 184
SspMI CTAG 2 cut(s) 251, 468
StyD4I CCNGG 1 cut(s) 73
TaaI ACNGT 2 cut(s) 257, 479
TaiI ACGT 1 cut(s) 62
TaqI TCGA 1 cut(s) 437
TasI AATT 2 cut(s) 54, 96
TauI GCSGC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 3 cut(s) 262, 421, 448
TseI GCWGC 4 cut(s) 165, 386, 389, 464
TspDTI ATGAA 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 3 cut(s) 262, 421, 448
VpaK11BI GGWCC 1 cut(s) 145
XagI CCTNNNNNAGG 1 cut(s) 205
XspI CTAG 2 cut(s) 251, 468
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.