Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Reverse (-)

39704021 .. 39704896

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG290000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGATGATTTGGAATTGGGCAGTAATAATTGCATTGCTTGCTGTTGTTTATGTTCTGGAACCATGGAGAAGCAAGAAGAAGAGGTTACCTCCTGGTCCAAGAGGGTTTCCTATTTTCGGAAGCCTCAACTTGTTAGGGGAGTTTCCTTACAAAGACCTACACAGACTGGCTCAAAAGTATGGCGACATCATGCACATGCGTTTAGGTCTCGTGTCTGCCATCGTCGTCTCCTCCCCTCAAGCAGCCGAGCTCTTCCTCAAGACCCACGACCTTGTTTTCGCAAGCAGGCCACCTCACGAAGGCTCAAAGCACATCTCTTTCGGGCAGAGGAACTTGACCTTTTCCAAGTATGGCTCTTATTGGCGAGACATGCGCAAGATGTGCACCCTCGAGTTGCTCAGCAACCACAAAATCAATTCTTTCAAGGAAATGAGGAGAGAAGAGGTTGTCCTTTTCATAGAGGCCATTAAAGAGGCAGCTGCAACCAGCCACGAACCAGTCGATCTCAGCGTTAAGGTGTCATCCCTTAGTGCGGATATGAGCTGCAGGATGGTGTTTGGAAAGAAGTACGCGGATAAAGAATTCGATGACAAGGGTTTCAAGTCTGTGATTCAACAAGCCATACAATTAGCAGCTGCACCTAACTTGGGCGATTACATCCCTTGTATTTCTCCACTTGACCTCCAAGGTTTCACTAAGCGCATGAAGGCTATTAACAAGGTGTTTGATGACTTTTTCGAGAAGATTATTGATGAACATCTTCAATCAAGTGATGAGGGAAAGACGAAGGACTTTGTTGATGTAATGCTCAGCTTTATGGGGACTCAAGAATCTGAATACCTGATTGAACGCTCCAATATCAAAGCAATCATTTTG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

292

Amino Acids

33.3

Weight (kDa)

8.78

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	30 - 289	8.3e-36	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	374
AccII	CGCG	1 cut(s)	572
AciI	CCGC	2 cut(s)	533, 572
AcsI	RAATTY	1 cut(s)	581
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	4 cut(s)	116, 299, 532, 647
AgsI	TTSAA	5 cut(s)	424, 601, 614, 764, 848
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	5 cut(s)	250, 479, 543, 635, 813
AluI	AGCT	5 cut(s)	250, 479, 543, 635, 813
Alw21I	GWGCWC	2 cut(s)	252, 386
Alw26I	GTCTC	3 cut(s)	212, 232, 360
Alw44I	GTGCAC	1 cut(s)	382
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	2 cut(s)	287, 462
ApaLI	GTGCAC	1 cut(s)	382
ApeKI	GCWGC	6 cut(s)	242, 476, 479, 543, 632, 635
ApoI	RAATTY	1 cut(s)	581
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
Asp700I	GAANNNNTTC	1 cut(s)	759
AspLEI	GCGC	2 cut(s)	375, 702
AspS9I	GGNCC	1 cut(s)	95
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	252
BauI	CACGAG	1 cut(s)	209
Bbv12I	GWGCWC	2 cut(s)	252, 386
BbvI	GCAGC	6 cut(s)	254, 466, 488, 530, 622, 644
BccI	CCATC	2 cut(s)	227, 544
BciT130I	CCWGG	1 cut(s)	93
BcoDI	GTCTC	3 cut(s)	212, 232, 360
BfmI	CTRYAG	1 cut(s)	544
BisI	GCNGC	6 cut(s)	243, 477, 480, 544, 633, 636
BlpI	GCTNAGC	2 cut(s)	398, 809
BlsI	GCNGC	6 cut(s)	244, 478, 481, 545, 634, 637
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	93
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
Bpu1102I	GCTNAGC	2 cut(s)	398, 809
BpuEI	CTTGAG	3 cut(s)	222, 242, 810
BsaBI	GATNNNNATC	1 cut(s)	756
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	62, 685
BsaXI	ACNNNNNCTCC	2 cut(s)	666, 696
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 299, 532, 647
Bse1I	ACTGG	2 cut(s)	171, 497
Bse3DI	GCAATG	1 cut(s)	32
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	62, 685
BseGI	GGATG	3 cut(s)	521, 555, 657
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	4 cut(s)	116, 299, 532, 647
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	3 cut(s)	412, 520, 823
BseNI	ACTGG	2 cut(s)	171, 497
BseRI	GAGGAG	2 cut(s)	220, 448
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	6 cut(s)	254, 466, 488, 530, 622, 644
BsgI	GTGCAG	1 cut(s)	621
Bsh1236I	CGCG	1 cut(s)	572
BshFI	GGCC	2 cut(s)	289, 464
BsiHKAI	GWGCWC	2 cut(s)	252, 386
BsiHKCI	CYCGRG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	835
BslI	CCNNNNNNNGG	4 cut(s)	116, 299, 532, 647
BsmAI	GTCTC	3 cut(s)	212, 232, 360
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	835
BsnI	GGCC	2 cut(s)	289, 464
Bso31I	GGTCTC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	389
Bsp1286I	GDGCHC	2 cut(s)	252, 386
Bsp143I	GATC	1 cut(s)	502
Bsp1720I	GCTNAGC	2 cut(s)	398, 809
Bsp19I	CCATGG	1 cut(s)	62
BspACI	CCGC	2 cut(s)	533, 572
BspANI	GGCC	2 cut(s)	289, 464
BspCNI	CTCAG	3 cut(s)	411, 519, 822
BspFNI	CGCG	1 cut(s)	572
BspLI	GGNNCC	1 cut(s)	60
BspMAI	CTGCAG	1 cut(s)	548
BspQI	GCTCTTC	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	32
BsrI	ACTGG	2 cut(s)	171, 497
BssECI	CCNNGG	2 cut(s)	62, 685
BssMI	GATC	1 cut(s)	502
BssSI	CACGAG	1 cut(s)	209
BssT1I	CCWWGG	2 cut(s)	62, 685
Bst2BI	CACGAG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	93
Bst6I	CTCTTC	3 cut(s)	74, 257, 435
BstAPI	GCANNNNNTGC	2 cut(s)	38, 381
BstC8I	GCNNGC	3 cut(s)	39, 283, 287
BstDEI	CTNAG	5 cut(s)	398, 506, 527, 696, 809
BstDSI	CCRYGG	1 cut(s)	62
BstEII	GGTNACC	1 cut(s)	84
BstENI	CCTNNNNNAGG	1 cut(s)	297
BstF5I	GGATG	3 cut(s)	521, 555, 657
BstFNI	CGCG	1 cut(s)	572
BstHHI	GCGC	2 cut(s)	375, 702
BstKTI	GATC	1 cut(s)	505
BstMAI	GTCTC	3 cut(s)	212, 232, 360
BstMBI	GATC	1 cut(s)	502
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 370, 381
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	2 cut(s)	199, 373
BstPI	GGTNACC	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	544
BstSLI	GKGCMC	1 cut(s)	386
BstUI	CGCG	1 cut(s)	572
BstV1I	GCAGC	6 cut(s)	254, 466, 488, 530, 622, 644
BsuRI	GGCC	2 cut(s)	289, 464
BtgI	CCRYGG	1 cut(s)	62
BtsCI	GGATG	3 cut(s)	521, 555, 657
Cac8I	GCNNGC	3 cut(s)	39, 283, 287
CfoI	GCGC	2 cut(s)	375, 702
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	5 cut(s)	63, 190, 196, 370, 703
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	5 cut(s)	398, 506, 527, 696, 809
DpnI	GATC	1 cut(s)	504
DpnII	GATC	1 cut(s)	502
Eam1104I	CTCTTC	3 cut(s)	74, 257, 435
EarI	CTCTTC	3 cut(s)	74, 257, 435
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	2 cut(s)	62, 685
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	250
Eco88I	CYCGRG	1 cut(s)	389
Eco91I	GGTNACC	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	250
EcoNI	CCTNNNNNAGG	1 cut(s)	297
EcoO65I	GGTNACC	1 cut(s)	84
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	62, 685
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	2 cut(s)	62, 685
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	5 cut(s)	66, 193, 199, 373, 706
FaqI	GGGAC	1 cut(s)	835
FatI	CATG	5 cut(s)	62, 189, 195, 369, 702
Fnu4HI	GCNGC	6 cut(s)	243, 477, 480, 544, 633, 636
FokI	GGATG	3 cut(s)	508, 562, 644
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	6 cut(s)	243, 477, 480, 544, 633, 636
FspI	TGCGCA	1 cut(s)	374
GlaI	GCGC	2 cut(s)	374, 701
GluI	GCNGC	6 cut(s)	243, 477, 480, 544, 633, 636
HaeIII	GGCC	2 cut(s)	289, 464
HhaI	GCGC	2 cut(s)	375, 702
Hin1II	CATG	5 cut(s)	66, 193, 199, 373, 706
Hin6I	GCGC	2 cut(s)	373, 700
HinP1I	GCGC	2 cut(s)	373, 700
HinfI	GANTC	3 cut(s)	610, 823, 830
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	2 cut(s)	119, 835
Hpy188III	TCNNGA	5 cut(s)	56, 259, 296, 739, 827
Hpy8I	GTNNAC	1 cut(s)	384
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	3 cut(s)	293, 700, 781
HpyCH4V	TGCA	6 cut(s)	32, 193, 384, 482, 546, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 370, 381
HpyF3I	CTNAG	5 cut(s)	398, 506, 527, 696, 809
Hsp92II	CATG	5 cut(s)	66, 193, 199, 373, 706
HspAI	GCGC	2 cut(s)	373, 700
Kzo9I	GATC	1 cut(s)	502
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	1 cut(s)	857
LpnPI	CCDG	9 cut(s)	41, 78, 105, 152, 271, 499, 510, 532, 854
Lsp1109I	GCAGC	6 cut(s)	254, 466, 488, 530, 622, 644
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	1 cut(s)	504
MboI	GATC	1 cut(s)	502
MboII	GAAGA	6 cut(s)	88, 91, 244, 452, 752, 754
MhlI	GDGCHC	2 cut(s)	252, 386
MluCI	AATT	5 cut(s)	13, 27, 415, 581, 626
MlyI	GAGTC	1 cut(s)	817
MroXI	GAANNNNTTC	1 cut(s)	759
MseI	TTAA	3 cut(s)	468, 513, 714
MslI	CAYNNNNRTG	1 cut(s)	194
MspA1I	CMGCKG	2 cut(s)	479, 635
MspR9I	CCNGG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	3 cut(s)	38, 370, 381
NcoI	CCATGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	502
NlaIII	CATG	5 cut(s)	66, 193, 199, 373, 706
NlaIV	GGNNCC	1 cut(s)	60
NmeAIII	GCCGAG	1 cut(s)	271
NsbI	TGCGCA	1 cut(s)	374
NspI	RCATGY	2 cut(s)	199, 373
PaeR7I	CTCGAG	1 cut(s)	389
PciSI	GCTCTTC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	2 cut(s)	498, 507
PdmI	GAANNNNTTC	1 cut(s)	759
PfeI	GAWTC	2 cut(s)	610, 830
PkrI	GCNGC	6 cut(s)	244, 478, 481, 545, 634, 637
PleI	GAGTC	1 cut(s)	817
PpsI	GAGTC	1 cut(s)	817
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	91
PspEI	GGTNACC	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	95
PspXI	VCTCGAGB	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	548
PvuII	CAGCTG	2 cut(s)	479, 635
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
RseI	CAYNNNNRTG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	257
SaqAI	TTAA	3 cut(s)	468, 513, 714
SatI	GCNGC	6 cut(s)	243, 477, 480, 544, 633, 636
Sau3AI	GATC	1 cut(s)	502
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	817
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	2 cut(s)	252, 386
SfcI	CTRYAG	1 cut(s)	544
Sfr274I	CTCGAG	1 cut(s)	389
SinI	GGWCC	1 cut(s)	95
SlaI	CTCGAG	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	4 cut(s)	237, 257, 389, 825
SmoI	CTYRAG	4 cut(s)	237, 257, 389, 825
Sse9I	AATT	5 cut(s)	13, 27, 415, 581, 626
SsiI	CCGC	2 cut(s)	533, 572
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	91
StyI	CCWWGG	2 cut(s)	62, 685
TaqI	TCGA	4 cut(s)	390, 501, 585, 738
TasI	AATT	5 cut(s)	13, 27, 415, 581, 626
TfiI	GAWTC	2 cut(s)	610, 830
Tru1I	TTAA	3 cut(s)	468, 513, 714
Tru9I	TTAA	3 cut(s)	468, 513, 714
TseI	GCWGC	6 cut(s)	242, 476, 479, 543, 632, 635
TspDTI	ATGAA	3 cut(s)	445, 719, 768
VneI	GTGCAC	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	95
XagI	CCTNNNNNAGG	1 cut(s)	297
XapI	RAATTY	1 cut(s)	581
XceI	RCATGY	2 cut(s)	199, 373
XhoI	CTCGAG	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.