Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Reverse (-)

15245119 .. 15246656

Gene Structure 1538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G235500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

AACAAGAAGACGACGTTACCTCCTGGTCCAAGAGGGTTTCCCATTTTTGGAAGCCTTCACTTGCTAGCGGAGTTCCCTAACAAGGACATTCATCGACTAGCCCAAAAATATGGCGACATCATGTACATGCGCTTAGGCCTTATTCCTACCATTGTTATCTCATCTCCAAAAGGTGCCGAGTTGTTCCTCAAAACACACGACCTTGCGTTTGCTAGCAGCCCACCCCATGAAGGTGCAAAGCACATCTCTTTTGGGCAGAGGAACTTGAGCTTTGCTGAATATGGCCCATATTGGCGCGACATCCGAAAGATGTGCACCCTTGAGTGGCTCAGCAACCACAAAAACAACTCCTTCAAGTCCATGCGGAGAGAAGAGGTTGCTGTATGTGTTGAGGCTATTCGTGCTGCTGCGAATAGTGGAAGTATTGCTGTTGATCTGAGTGACAATGCCTCGTCTCTTAGCGTGTACATGAGCTGCCGGATGGTGTTTGGGAAGAAGTACATGGATGTGGAGTTTGATGGGAGGGGGTTCATGTCTGTGCGCATGAAGTCAGTTAACAAGGCTTTTGATACCTTCTTTGAGAAGGTCATTGAGCAGCATCTTCAATATAATGACGGAGAAAGAACTAAGAACTTTGTTGATGTCATGATGGGCTTCATGGGATCTGAAAAATCTAAATACCGTATCAAACGCCCCCATATCAAAGCCATAATATTGGACATGCTGGCGGCCTCCATAGATCCATCATCAACAGCAGTCGAGTGGGCATTTTCCGAACTCATGAGACATCCAAAAGCAATGAAGAAAGTCCAAAAGGAGCTAGAAAATGTTGTTGGATTGGACAGAATGGTGGAGGAATCAGACTTATTGCACTGTCAATGGCACCACATACCCAAAAAATCGCATGTTATCATAAATGCGTGGGCAATCGGGAGAGACCCGAGTGCTTGGACAGATGCAGAGGAGTTCATACCCGAAAGATTTGAGGGTAGCAACATTGATACGTTGCCCTGGATGCATCTAGGCCTTACTGTGGTCCAGATAGTGTTGGCACAACTTGTGCATTGTTTTGATTGGGAGCTTCCAGATAGCATGTTGCCAGAAGAGGACATGACTGAGGTGTTTGGCCTTACGATATCAAGGGCCAAGCATCTACTCGCTATTCCTTTCTATCGCCTTCACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

396

Amino Acids

45.15

Weight (kDa)

7.83

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	542
AccB1I	GGYRCC	2 cut(s)	173, 882
AccII	CGCG	1 cut(s)	297
AciI	CCGC	3 cut(s)	68, 364, 728
AclWI	GGATC	2 cut(s)	670, 734
AfaI	GTAC	3 cut(s)	125, 467, 500
AfiI	CCNNNNNNNGG	5 cut(s)	47, 82, 230, 324, 1033
AgsI	TTSAA	2 cut(s)	355, 605
AjnI	CCWGG	2 cut(s)	22, 1010
AjuI	GAANNNNNNNTTGG	2 cut(s)	816, 848
AluBI	AGCT	4 cut(s)	270, 474, 820, 1081
AluI	AGCT	4 cut(s)	270, 474, 820, 1081
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	3 cut(s)	459, 778, 930
Alw44I	GTGCAC	1 cut(s)	313
AlwI	GGATC	2 cut(s)	670, 734
Ama87I	CYCGRG	1 cut(s)	940
AoxI	GGCC	6 cut(s)	136, 283, 729, 1024, 1126, 1143
ApaLI	GTGCAC	1 cut(s)	313
ApeKI	GCWGC	5 cut(s)	216, 404, 407, 474, 595
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AspLEI	GCGC	3 cut(s)	132, 297, 543
AspS9I	GGNCC	4 cut(s)	26, 284, 1036, 1143
AsuNHI	GCTAGC	2 cut(s)	64, 212
AvaI	CYCGRG	1 cut(s)	940
AvaII	GGWCC	2 cut(s)	26, 1036
BaeGI	GKGCMC	1 cut(s)	317
BanI	GGYRCC	2 cut(s)	173, 882
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	5 cut(s)	228, 391, 394, 461, 607
BccI	CCATC	4 cut(s)	475, 512, 643, 751
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BciT130I	CCWGG	2 cut(s)	24, 1012
BcoDI	GTCTC	3 cut(s)	459, 778, 930
BfaI	CTAG	5 cut(s)	65, 98, 213, 821, 1022
BisI	GCNGC	6 cut(s)	217, 405, 408, 475, 596, 729
BlpI	GCTNAGC	1 cut(s)	329
BlsI	GCNGC	6 cut(s)	218, 406, 409, 476, 597, 730
Bme1390I	CCNGG	2 cut(s)	24, 1012
Bme18I	GGWCC	2 cut(s)	26, 1036
BmeT110I	CYCGRG	1 cut(s)	940
BmgT120I	GGNCC	4 cut(s)	26, 284, 1036, 1143
BmiI	GGNNCC	2 cut(s)	175, 884
BmrFI	CCNGG	2 cut(s)	24, 1012
BmsI	GCATC	5 cut(s)	607, 946, 1005, 1027, 1159
BmtI	GCTAGC	2 cut(s)	68, 216
BpiI	GAAGAC	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	133
Bpu1102I	GCTNAGC	1 cut(s)	329
BpuEI	CTTGAG	2 cut(s)	286, 341
BsaI	GGTCTC	1 cut(s)	930
BsaJI	CCNNGG	1 cut(s)	1010
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 82, 230, 324, 1033
Bse3DI	GCAATG	1 cut(s)	804
BseBI	CCWGG	2 cut(s)	24, 1012
BseDI	CCNNGG	1 cut(s)	1010
BseGI	GGATG	5 cut(s)	300, 486, 511, 787, 1020
BseLI	CCNNNNNNNGG	5 cut(s)	47, 82, 230, 324, 1033
BseMI	GCAATG	1 cut(s)	804
BseMII	CTCAG	3 cut(s)	343, 428, 1107
BseRI	GAGGAG	1 cut(s)	977
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	5 cut(s)	228, 391, 394, 461, 607
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	6 cut(s)	138, 285, 731, 1026, 1128, 1145
BshNI	GGYRCC	2 cut(s)	173, 882
BsiHKAI	GWGCWC	1 cut(s)	317
BsiHKCI	CYCGRG	1 cut(s)	940
BsiSI	CCGG	1 cut(s)	478
BslI	CCNNNNNNNGG	5 cut(s)	47, 82, 230, 324, 1033
BsmAI	GTCTC	3 cut(s)	459, 778, 930
BsmBI	CGTCTC	1 cut(s)	459
BsnI	GGCC	6 cut(s)	138, 285, 731, 1026, 1128, 1145
Bso31I	GGTCTC	1 cut(s)	930
BsoBI	CYCGRG	1 cut(s)	940
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp1407I	TGTACA	2 cut(s)	123, 465
Bsp143I	GATC	3 cut(s)	433, 662, 739
Bsp1720I	GCTNAGC	1 cut(s)	329
BspACI	CCGC	3 cut(s)	68, 364, 728
BspANI	GGCC	6 cut(s)	138, 285, 731, 1026, 1128, 1145
BspCNI	CTCAG	3 cut(s)	342, 429, 1108
BspFNI	CGCG	1 cut(s)	297
BspHI	TCATGA	2 cut(s)	645, 780
BspLI	GGNNCC	2 cut(s)	175, 884
BspOI	GCTAGC	2 cut(s)	68, 216
BspPI	GGATC	2 cut(s)	670, 734
BspT107I	GGYRCC	2 cut(s)	173, 882
BspTNI	GGTCTC	1 cut(s)	930
BsrDI	GCAATG	1 cut(s)	804
BsrGI	TGTACA	2 cut(s)	123, 465
BssECI	CCNNGG	1 cut(s)	1010
BssMI	GATC	3 cut(s)	433, 662, 739
Bst2UI	CCWGG	2 cut(s)	24, 1012
Bst4CI	ACNGT	3 cut(s)	683, 875, 1033
Bst6I	CTCTTC	2 cut(s)	366, 1098
BstAUI	TGTACA	2 cut(s)	123, 465
BstC8I	GCNNGC	3 cut(s)	66, 214, 726
BstDEI	CTNAG	6 cut(s)	133, 329, 437, 458, 627, 1116
BstF5I	GGATG	5 cut(s)	300, 486, 511, 787, 1020
BstFNI	CGCG	1 cut(s)	297
BstHHI	GCGC	3 cut(s)	132, 297, 543
BstKTI	GATC	3 cut(s)	436, 665, 742
BstMAI	GTCTC	3 cut(s)	459, 778, 930
BstMBI	GATC	3 cut(s)	433, 662, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 1015
BstNI	CCWGG	2 cut(s)	24, 1012
BstNSI	RCATGY	4 cut(s)	130, 724, 908, 1096
BstSCI	CCNGG	2 cut(s)	22, 1010
BstSLI	GKGCMC	1 cut(s)	317
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	5 cut(s)	228, 391, 394, 461, 607
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	2 cut(s)	662, 739
BstXI	CCANNNNNNTGG	2 cut(s)	110, 715
BstYI	RGATCY	2 cut(s)	662, 739
BsuRI	GGCC	6 cut(s)	138, 285, 731, 1026, 1128, 1145
BtsCI	GGATG	5 cut(s)	300, 486, 511, 787, 1020
BtsIMutI	CAGTG	1 cut(s)	871
Cac8I	GCNNGC	3 cut(s)	66, 214, 726
CciI	TCATGA	2 cut(s)	645, 780
CfoI	GCGC	3 cut(s)	132, 297, 543
Cfr13I	GGNCC	4 cut(s)	26, 284, 1036, 1143
Csp6I	GTAC	3 cut(s)	124, 466, 499
CviQI	GTAC	3 cut(s)	124, 466, 499
DdeI	CTNAG	6 cut(s)	133, 329, 437, 458, 627, 1116
DpnI	GATC	3 cut(s)	435, 664, 741
DpnII	GATC	3 cut(s)	433, 662, 739
Eam1104I	CTCTTC	2 cut(s)	366, 1098
EarI	CTCTTC	2 cut(s)	366, 1098
Eco147I	AGGCCT	2 cut(s)	138, 1026
Eco31I	GGTCTC	1 cut(s)	930
Eco32I	GATATC	1 cut(s)	1137
Eco47I	GGWCC	2 cut(s)	26, 1036
Eco88I	CYCGRG	1 cut(s)	940
EcoRII	CCWGG	2 cut(s)	22, 1010
EcoRV	GATATC	1 cut(s)	1137
EcoT22I	ATGCAT	1 cut(s)	1020
Esp3I	CGTCTC	1 cut(s)	459
Fnu4HI	GCNGC	6 cut(s)	217, 405, 408, 475, 596, 729
FokI	GGATG	5 cut(s)	287, 493, 518, 774, 1027
Fsp4HI	GCNGC	6 cut(s)	217, 405, 408, 475, 596, 729
FspAI	RTGCGCAY	1 cut(s)	542
FspBI	CTAG	5 cut(s)	65, 98, 213, 821, 1022
FspI	TGCGCA	1 cut(s)	542
GlaI	GCGC	3 cut(s)	131, 296, 542
GluI	GCNGC	6 cut(s)	217, 405, 408, 475, 596, 729
HaeIII	GGCC	6 cut(s)	138, 285, 731, 1026, 1128, 1145
HapII	CCGG	1 cut(s)	478
HhaI	GCGC	3 cut(s)	132, 297, 543
Hin6I	GCGC	3 cut(s)	130, 295, 541
HinP1I	GCGC	3 cut(s)	130, 295, 541
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	1 cut(s)	857
HpaI	GTTAAC	1 cut(s)	556
HpaII	CCGG	1 cut(s)	478
Hpy166II	GTNNAC	3 cut(s)	315, 466, 556
Hpy188I	TCNGA	5 cut(s)	305, 438, 667, 775, 862
Hpy188III	TCNNGA	5 cut(s)	646, 781, 931, 1039, 1085
Hpy8I	GTNNAC	3 cut(s)	315, 466, 556
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	6 cut(s)	65, 224, 361, 577, 583, 1187
HpyCH4III	ACNGT	3 cut(s)	683, 875, 1033
HpyCH4IV	ACGT	2 cut(s)	14, 1004
HpyCH4V	TGCA	6 cut(s)	236, 315, 871, 959, 1018, 1063
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 1015
HpyF3I	CTNAG	6 cut(s)	133, 329, 437, 458, 627, 1116
HpySE526I	ACGT	2 cut(s)	14, 1004
HspAI	GCGC	3 cut(s)	130, 295, 541
KspAI	GTTAAC	1 cut(s)	556
Kzo9I	GATC	3 cut(s)	433, 662, 739
LmnI	GCTCC	2 cut(s)	817, 1078
LpnPI	CCDG	9 cut(s)	9, 36, 491, 710, 997, 1024, 1052, 1098, 1113
Lsp1109I	GCAGC	5 cut(s)	228, 391, 394, 461, 607
LweI	GCATC	5 cut(s)	607, 946, 1005, 1027, 1159
MaeI	CTAG	5 cut(s)	65, 98, 213, 821, 1022
MaeII	ACGT	2 cut(s)	14, 1004
MaeIII	GTNAC	2 cut(s)	15, 440
MalI	GATC	3 cut(s)	435, 664, 741
MboI	GATC	3 cut(s)	433, 662, 739
MboII	GAAGA	6 cut(s)	19, 383, 505, 593, 814, 1115
MflI	RGATCY	2 cut(s)	662, 739
MhlI	GDGCHC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	814
Mph1103I	ATGCAT	1 cut(s)	1020
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	4 cut(s)	125, 231, 506, 536
MspI	CCGG	1 cut(s)	478
MspR9I	CCNGG	2 cut(s)	24, 1012
MvaI	CCWGG	2 cut(s)	24, 1012
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	401, 1015
NdeII	GATC	3 cut(s)	433, 662, 739
NheI	GCTAGC	2 cut(s)	64, 212
NlaIV	GGNNCC	2 cut(s)	175, 884
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	440
NsbI	TGCGCA	1 cut(s)	542
NsiI	ATGCAT	1 cut(s)	1020
NspI	RCATGY	4 cut(s)	130, 724, 908, 1096
PagI	TCATGA	2 cut(s)	645, 780
PceI	AGGCCT	2 cut(s)	138, 1026
PfeI	GAWTC	1 cut(s)	857
PkrI	GCNGC	6 cut(s)	218, 406, 409, 476, 597, 730
Psp6I	CCWGG	2 cut(s)	22, 1010
PspGI	CCWGG	2 cut(s)	22, 1010
PspN4I	GGNNCC	2 cut(s)	175, 884
PspPI	GGNCC	4 cut(s)	26, 284, 1036, 1143
PsuI	RGATCY	2 cut(s)	662, 739
RsaI	GTAC	3 cut(s)	125, 467, 500
RsaNI	GTAC	3 cut(s)	124, 466, 499
RseI	CAYNNNNRTG	4 cut(s)	125, 231, 506, 536
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	6 cut(s)	217, 405, 408, 475, 596, 729
Sau3AI	GATC	3 cut(s)	433, 662, 739
Sau96I	GGNCC	4 cut(s)	26, 284, 1036, 1143
ScrFI	CCNGG	2 cut(s)	24, 1012
SduI	GDGCHC	1 cut(s)	317
SfaNI	GCATC	5 cut(s)	607, 946, 1005, 1027, 1159
SinI	GGWCC	2 cut(s)	26, 1036
SmiMI	CAYNNNNRTG	4 cut(s)	125, 231, 506, 536
SmlI	CTYRAG	2 cut(s)	265, 320
SmoI	CTYRAG	2 cut(s)	265, 320
SseBI	AGGCCT	2 cut(s)	138, 1026
SsiI	CCGC	3 cut(s)	68, 364, 728
SspI	AATATT	1 cut(s)	714
SspMI	CTAG	5 cut(s)	65, 98, 213, 821, 1022
StuI	AGGCCT	2 cut(s)	138, 1026
StyD4I	CCNGG	2 cut(s)	22, 1010
TaaI	ACNGT	3 cut(s)	683, 875, 1033
TaiI	ACGT	2 cut(s)	17, 1007
TaqI	TCGA	2 cut(s)	94, 759
TatI	WGTACW	3 cut(s)	123, 465, 498
TauI	GCSGC	1 cut(s)	731
TfiI	GAWTC	1 cut(s)	857
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	1 cut(s)	878
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	5 cut(s)	216, 404, 407, 474, 595
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	7 cut(s)	80, 243, 520, 560, 646, 815, 958
TspGWI	ACGGA	1 cut(s)	630
TspRI	CASTG	1 cut(s)	878
VneI	GTGCAC	1 cut(s)	313
VpaK11BI	GGWCC	2 cut(s)	26, 1036
XceI	RCATGY	4 cut(s)	130, 724, 908, 1096
XspI	CTAG	5 cut(s)	65, 98, 213, 821, 1022
Zsp2I	ATGCAT	1 cut(s)	1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.