Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000698.1

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Reverse (-)

499424 .. 499987

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000698.1_g000123.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgcgcaagatgtgcaccctcgagttgctcatcaaccacaaaatcaattctttcaaggaaatgaggagagaagaggttgtccttttcatagaggccattaaagaggcagctgcaaccagccacgaaccagtcgatctcagcactaaggtgtcatctcttagtgcggatatgagctgcaggatggtgtttggaaagaagtacactgataaagaattcgacgacaagggtttcaggtctgtgattcaacaaggcaaacaattagcagcagcacctaacttaggcaattacatcccttgtattgctccacttgacctccaaggtttcactaagcgcatgaaggctattaacaaggtgtttgatgactttttcgagaagattattgatgaacatctccagtcgagtgatgagggaaagacgaaggactttgttgatgtaatgctcagctttatggggactcaagaatctgaatacctgattgtgttaaacagcgacaagcgtggcccgtggcgcaccattgtaccgatattgtcccaacttaaccacccattaggtgttgggttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

187

Amino Acids

21.24

Weight (kDa)

6.43

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AciI	CCGC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	212
AfaI	GTAC	2 cut(s)	200, 519
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	55, 245
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	3 cut(s)	110, 174, 444
AluI	AGCT	3 cut(s)	110, 174, 444
Alw21I	GWGCWC	1 cut(s)	17
Alw44I	GTGCAC	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	20
AoxI	GGCC	2 cut(s)	93, 499
ApaLI	GTGCAC	1 cut(s)	13
ApeKI	GCWGC	5 cut(s)	107, 110, 174, 263, 266
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	3 cut(s)	6, 333, 510
AspS9I	GGNCC	1 cut(s)	500
AvaI	CYCGRG	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	17
BaeI	ACNNNNGTAYC	2 cut(s)	501, 534
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	5 cut(s)	97, 119, 161, 275, 278
BccI	CCATC	1 cut(s)	175
BfmI	CTRYAG	1 cut(s)	175
BisI	GCNGC	5 cut(s)	108, 111, 175, 264, 267
BlpI	GCTNAGC	1 cut(s)	440
BlsI	GCNGC	5 cut(s)	109, 112, 176, 265, 268
BmeT110I	CYCGRG	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	377
Bpu1102I	GCTNAGC	1 cut(s)	440
BpuEI	CTTGAG	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	316, 503
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	2 cut(s)	128, 394
Bse8I	GATNNNNATC	1 cut(s)	387
BseDI	CCNNGG	2 cut(s)	316, 503
BseGI	GGATG	2 cut(s)	186, 288
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	2 cut(s)	151, 454
BseNI	ACTGG	2 cut(s)	128, 394
BseRI	GAGGAG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	5 cut(s)	97, 119, 161, 275, 278
BshFI	GGCC	2 cut(s)	95, 501
BsiHKAI	GWGCWC	1 cut(s)	17
BsiHKCI	CYCGRG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	466, 514
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmFI	GGGAC	2 cut(s)	466, 514
BsnI	GGCC	2 cut(s)	95, 501
BsoBI	CYCGRG	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	133
Bsp1720I	GCTNAGC	1 cut(s)	440
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	2 cut(s)	95, 501
BspCNI	CTCAG	2 cut(s)	150, 453
BspMAI	CTGCAG	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	128, 394
BssECI	CCNNGG	2 cut(s)	316, 503
BssMI	GATC	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstDEI	CTNAG	6 cut(s)	137, 144, 158, 277, 327, 440
BstDSI	CCRYGG	1 cut(s)	503
BstENI	CCTNNNNNAGG	1 cut(s)	276
BstF5I	GGATG	2 cut(s)	186, 288
BstHHI	GCGC	3 cut(s)	6, 333, 510
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 507
BstSFI	CTRYAG	1 cut(s)	175
BstSLI	GKGCMC	1 cut(s)	17
BstV1I	GCAGC	5 cut(s)	97, 119, 161, 275, 278
BsuRI	GGCC	2 cut(s)	95, 501
BtgI	CCRYGG	1 cut(s)	503
BtsCI	GGATG	2 cut(s)	186, 288
BtsIMutI	CAGTG	1 cut(s)	201
CfoI	GCGC	3 cut(s)	6, 333, 510
Cfr13I	GGNCC	1 cut(s)	500
Csp6I	GTAC	2 cut(s)	199, 518
CviAII	CATG	1 cut(s)	334
CviJI	RGCY	7 cut(s)	95, 110, 120, 174, 341, 444, 501
CviKI_1	RGCY	7 cut(s)	95, 110, 120, 174, 341, 444, 501
CviQI	GTAC	2 cut(s)	199, 518
DdeI	CTNAG	6 cut(s)	137, 144, 158, 277, 327, 440
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	316
Eco88I	CYCGRG	1 cut(s)	20
EcoNI	CCTNNNNNAGG	1 cut(s)	276
EcoRI	GAATTC	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	1 cut(s)	337
FaiI	YATR	4 cut(s)	89, 170, 335, 449
FaqI	GGGAC	2 cut(s)	466, 514
FatI	CATG	1 cut(s)	333
Fnu4HI	GCNGC	5 cut(s)	108, 111, 175, 264, 267
FokI	GGATG	2 cut(s)	193, 275
Fsp4HI	GCNGC	5 cut(s)	108, 111, 175, 264, 267
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	3 cut(s)	5, 332, 509
GluI	GCNGC	5 cut(s)	108, 111, 175, 264, 267
GsuI	CTGGAG	1 cut(s)	377
HaeIII	GGCC	2 cut(s)	95, 501
HhaI	GCGC	3 cut(s)	6, 333, 510
Hin1II	CATG	1 cut(s)	337
Hin6I	GCGC	3 cut(s)	4, 331, 508
HinP1I	GCGC	3 cut(s)	4, 331, 508
HinfI	GANTC	3 cut(s)	241, 454, 461
Hpy166II	GTNNAC	2 cut(s)	15, 201
Hpy188I	TCNGA	1 cut(s)	466
Hpy188III	TCNNGA	2 cut(s)	370, 458
Hpy8I	GTNNAC	2 cut(s)	15, 201
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	2 cut(s)	331, 412
HpyCH4V	TGCA	3 cut(s)	15, 113, 177
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 507
HpyF3I	CTNAG	6 cut(s)	137, 144, 158, 277, 327, 440
Hsp92II	CATG	1 cut(s)	337
HspAI	GCGC	3 cut(s)	4, 331, 508
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	6 cut(s)	130, 141, 163, 217, 407, 485
Lsp1109I	GCAGC	5 cut(s)	97, 119, 161, 275, 278
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	2 cut(s)	83, 385
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	4 cut(s)	46, 212, 257, 283
MlyI	GAGTC	1 cut(s)	448
MnlI	CCTC	7 cut(s)	29, 57, 67, 85, 97, 323, 400
MseI	TTAA	5 cut(s)	99, 345, 482, 537, 562
MslI	CAYNNNNRTG	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	12, 507
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	337
NsbI	TGCGCA	1 cut(s)	5
OliI	CACNNNNGTG	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	20
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	241, 461
PkrI	GCNGC	5 cut(s)	109, 112, 176, 265, 268
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PspPI	GGNCC	1 cut(s)	500
PspXI	VCTCGAGB	1 cut(s)	20
PstI	CTGCAG	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	200, 519
RsaNI	GTAC	2 cut(s)	199, 518
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	5 cut(s)	99, 345, 482, 537, 562
SatI	GCNGC	5 cut(s)	108, 111, 175, 264, 267
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	500
SchI	GAGTC	1 cut(s)	448
SduI	GDGCHC	1 cut(s)	17
SfcI	CTRYAG	1 cut(s)	175
Sfr274I	CTCGAG	1 cut(s)	20
SlaI	CTCGAG	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	2 cut(s)	20, 456
SmoI	CTYRAG	2 cut(s)	20, 456
Sse9I	AATT	4 cut(s)	46, 212, 257, 283
SsiI	CCGC	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	316
TaqI	TCGA	5 cut(s)	21, 132, 216, 369, 398
TasI	AATT	4 cut(s)	46, 212, 257, 283
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	2 cut(s)	241, 461
Tru1I	TTAA	5 cut(s)	99, 345, 482, 537, 562
Tru9I	TTAA	5 cut(s)	99, 345, 482, 537, 562
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	5 cut(s)	107, 110, 174, 263, 266
TspDTI	ATGAA	3 cut(s)	76, 350, 399
TspRI	CASTG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	13
XagI	CCTNNNNNAGG	1 cut(s)	276
XapI	RAATTY	1 cut(s)	212
XhoI	CTCGAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.