Rh1DG186600

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
37457372 .. 37458519
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG186600.1

Sequence Viewer

Length: 210 bp
ATGTGCCTTCTGTTGTATTCACAAATATTCAAACCAAAAAACAAGGCTCGCCCTTCTGGTTTTCGAAAGGCTGCAGCAAAGGAACAACAAGTTTCGTTTGATCTCAGCTCCAAGGTGTTGTCTCTCAGCGCAGACATGAATTACAGAATGGTGTTTGGGAAGAAGTATATGGATGAGGAGTTTAACGAGAGAGGTTTCAATAGTCTGTGA

Protein Analysis

69

Amino Acids

7.99

Weight (kDa)

9.61

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 31, 199
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 126
ApeKI GCWGC 2 cut(s) 71, 74
AspLEI GCGC 1 cut(s) 131
AsuII TTCGAA 1 cut(s) 64
BbvI GCAGC 2 cut(s) 58, 86
BcoDI GTCTC 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 2 cut(s) 72, 75
BlsI GCNGC 2 cut(s) 73, 76
Bpu14I TTCGAA 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 178
BseMII CTCAG 2 cut(s) 118, 139
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 2 cut(s) 58, 86
BsmAI GTCTC 1 cut(s) 126
Bsp119I TTCGAA 1 cut(s) 64
Bsp143I GATC 1 cut(s) 100
BspCNI CTCAG 2 cut(s) 117, 138
BspMAI CTGCAG 1 cut(s) 76
BspT104I TTCGAA 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 104, 125
BstF5I GGATG 1 cut(s) 178
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 58, 86
BtsCI GGATG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 49
CfoI GCGC 1 cut(s) 131
CviAII CATG 1 cut(s) 136
CviJI RGCY 3 cut(s) 47, 71, 108
CviKI_1 RGCY 3 cut(s) 47, 71, 108
DdeI CTNAG 2 cut(s) 104, 125
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 139
FaiI YATR 3 cut(s) 137, 168, 170
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 72, 75
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 2 cut(s) 72, 75
GlaI GCGC 1 cut(s) 130
GluI GCNGC 2 cut(s) 72, 75
HhaI GCGC 1 cut(s) 131
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HpyAV CCTTC 2 cut(s) 17, 63
HpyCH4V TGCA 1 cut(s) 74
HpyF3I CTNAG 2 cut(s) 104, 125
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 1 cut(s) 129
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 1 cut(s) 42
Lsp1109I GCAGC 2 cut(s) 58, 86
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 1 cut(s) 172
MluCI AATT 1 cut(s) 139
MnlI CCTC 2 cut(s) 169, 185
MseI TTAA 1 cut(s) 183
NdeII GATC 1 cut(s) 100
NlaIII CATG 1 cut(s) 139
NspV TTCGAA 1 cut(s) 64
PkrI GCNGC 2 cut(s) 73, 76
PstI CTGCAG 1 cut(s) 76
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 2 cut(s) 72, 75
Sau3AI GATC 1 cut(s) 100
SetI ASST 3 cut(s) 110, 117, 196
SfcI CTRYAG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 64
SgeI CNNG 7 cut(s) 55, 60, 69, 101, 124, 148, 199
Sse9I AATT 1 cut(s) 139
SspI AATATT 1 cut(s) 27
StyI CCWWGG 1 cut(s) 111
TaqI TCGA 1 cut(s) 64
TasI AATT 1 cut(s) 139
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseI GCWGC 2 cut(s) 71, 74
TspDTI ATGAA 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.