Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Reverse (-)

40578387 .. 40582048

Gene Structure 3662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG293200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGATGGTTTGGAATTGGGCAGTAATAATTGCATTGCTTGCTGTTGTTTATATTCTGGAACCATGGAGAAGCAAGAAGAAGAGGTTACCTCCTGGTCCAAGAGGGTTTCCTATTTTCGGAAGCCTCAACTTGTTAGGGGAGTTTCCTCACAAAGACCTACACAGACTGGCTCAAAAGTATGGCGACATCATGCACATGCGATTAGGTCTCGTGTCTGCCATCGTCGTCTCCTCCCCTCAAGCAGCCGAGCTCTTCCTCAAGACCCACGACCTTGTTTTCGCAAGCAGGCCACCTCACGAAGGCGCAAAGCACATCTCTTTCGGGCAGAGGAACTTATCCTTTTCCGAGTATGGCTCTTATTGGCGAGACATGCGCAAGATATGCACCCTCGAGTTGCTCAGCAATCACAAAATCAATTCTTTCAAGGAAATGAGGAGAGAAGAGGTTGTCCTTTTCATAGAGGCCATTAAAGAGGCAGCTGCAACCAGCCACGAACCAGTCGATCTCAGCGCTAAGTTGTGTATAGTTCAAAAAACTAGTGTTGATGACAAGTTTGGGGATGAGATTGTTGAGAACTGGACGGTTAAGATGAACCTTCAAAAGGGAAAAGGCAAACCCAAAATGAGTGGAAGTAGTAGAAGAGATGTAACAAAGCCATGGATCATGAGGTACCTGGCTCAGTGGGAACCAGTGCCAGCTTCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

235

Amino Acids

26.87

Weight (kDa)

9.62

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	30 - 170	2.9e-20	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	374
Acc65I	GGTACC	1 cut(s)	669
AccB1I	GGYRCC	1 cut(s)	669
AclWI	GGATC	1 cut(s)	668
AfaI	GTAC	1 cut(s)	671
AfeI	AGCGCT	1 cut(s)	511
AfiI	CCNNNNNNNGG	3 cut(s)	116, 299, 601
AgsI	TTSAA	3 cut(s)	424, 530, 599
AhlI	ACTAGT	1 cut(s)	536
AjnI	CCWGG	2 cut(s)	91, 672
AluBI	AGCT	3 cut(s)	250, 479, 698
AluI	AGCT	3 cut(s)	250, 479, 698
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	3 cut(s)	212, 232, 360
AlwI	GGATC	1 cut(s)	668
Ama87I	CYCGRG	1 cut(s)	389
Aor51HI	AGCGCT	1 cut(s)	511
AoxI	GGCC	2 cut(s)	287, 462
ApeKI	GCWGC	3 cut(s)	242, 476, 479
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
Asp718I	GGTACC	1 cut(s)	669
AspLEI	GCGC	3 cut(s)	305, 375, 512
AspS9I	GGNCC	1 cut(s)	95
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	669
BanII	GRGCYC	1 cut(s)	252
BauI	CACGAG	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	254, 466, 488
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	2 cut(s)	93, 674
BcoDI	GTCTC	3 cut(s)	212, 232, 360
BcuI	ACTAGT	1 cut(s)	536
BfaI	CTAG	1 cut(s)	537
BfoI	RGCGCY	1 cut(s)	513
BisI	GCNGC	3 cut(s)	243, 477, 480
BlpI	GCTNAGC	1 cut(s)	398
BlsI	GCNGC	3 cut(s)	244, 478, 481
Bme1390I	CCNGG	2 cut(s)	93, 674
Bme18I	GGWCC	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	3 cut(s)	60, 671, 687
BmrFI	CCNGG	2 cut(s)	93, 674
BplI	GAGNNNNNCTC	4 cut(s)	73, 105, 338, 370
Bpu1102I	GCTNAGC	1 cut(s)	398
BpuEI	CTTGAG	2 cut(s)	222, 242
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	62, 656
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 299, 601
Bse1I	ACTGG	4 cut(s)	171, 497, 581, 689
Bse3DI	GCAATG	1 cut(s)	32
BseBI	CCWGG	2 cut(s)	93, 674
BseDI	CCNNGG	2 cut(s)	62, 656
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	3 cut(s)	116, 299, 601
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	3 cut(s)	412, 520, 692
BseNI	ACTGG	4 cut(s)	171, 497, 581, 689
BseRI	GAGGAG	2 cut(s)	220, 448
BseXI	GCAGC	3 cut(s)	254, 466, 488
BshFI	GGCC	2 cut(s)	289, 464
BshNI	GGYRCC	1 cut(s)	669
BsiHKAI	GWGCWC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	389
BslI	CCNNNNNNNGG	3 cut(s)	116, 299, 601
BsmAI	GTCTC	3 cut(s)	212, 232, 360
BsmBI	CGTCTC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	289, 464
Bso31I	GGTCTC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	2 cut(s)	502, 660
Bsp1720I	GCTNAGC	1 cut(s)	398
Bsp19I	CCATGG	2 cut(s)	62, 656
BspANI	GGCC	2 cut(s)	289, 464
BspCNI	CTCAG	3 cut(s)	411, 519, 691
BspHI	TCATGA	1 cut(s)	663
BspLI	GGNNCC	3 cut(s)	60, 671, 687
BspPI	GGATC	1 cut(s)	668
BspQI	GCTCTTC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	669
BspTNI	GGTCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	32
BsrI	ACTGG	4 cut(s)	171, 497, 581, 689
BssECI	CCNNGG	2 cut(s)	62, 656
BssMI	GATC	2 cut(s)	502, 660
BssSI	CACGAG	1 cut(s)	209
BssT1I	CCWWGG	2 cut(s)	62, 656
Bst2BI	CACGAG	1 cut(s)	209
Bst2UI	CCWGG	2 cut(s)	93, 674
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	4 cut(s)	74, 257, 435, 634
BstAPI	GCANNNNNTGC	2 cut(s)	38, 381
BstC8I	GCNNGC	4 cut(s)	39, 283, 287, 696
BstDEI	CTNAG	4 cut(s)	398, 506, 513, 678
BstDSI	CCRYGG	2 cut(s)	62, 656
BstEII	GGTNACC	1 cut(s)	84
BstENI	CCTNNNNNAGG	2 cut(s)	297, 599
BstF5I	GGATG	1 cut(s)	565
BstH2I	RGCGCY	1 cut(s)	513
BstHHI	GCGC	3 cut(s)	305, 375, 512
BstKTI	GATC	2 cut(s)	505, 663
BstMAI	GTCTC	3 cut(s)	212, 232, 360
BstMBI	GATC	2 cut(s)	502, 660
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 370, 381
BstNI	CCWGG	2 cut(s)	93, 674
BstNSI	RCATGY	2 cut(s)	199, 373
BstPI	GGTNACC	1 cut(s)	84
BstSCI	CCNGG	2 cut(s)	91, 672
BstV1I	GCAGC	3 cut(s)	254, 466, 488
BsuRI	GGCC	2 cut(s)	289, 464
BtgI	CCRYGG	2 cut(s)	62, 656
BtsCI	GGATG	1 cut(s)	565
BtsIMutI	CAGTG	2 cut(s)	686, 696
Cac8I	GCNNGC	4 cut(s)	39, 283, 287, 696
CciI	TCATGA	1 cut(s)	663
CfoI	GCGC	3 cut(s)	305, 375, 512
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	670
CspCI	CAANNNNNGTGG	2 cut(s)	607, 642
CviAII	CATG	6 cut(s)	63, 190, 196, 370, 657, 664
CviQI	GTAC	1 cut(s)	670
DdeI	CTNAG	4 cut(s)	398, 506, 513, 678
DpnI	GATC	2 cut(s)	504, 662
DpnII	GATC	2 cut(s)	502, 660
Eam1104I	CTCTTC	4 cut(s)	74, 257, 435, 634
EarI	CTCTTC	4 cut(s)	74, 257, 435, 634
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	2 cut(s)	62, 656
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	95
Eco47III	AGCGCT	1 cut(s)	511
Eco53kI	GAGCTC	1 cut(s)	250
Eco88I	CYCGRG	1 cut(s)	389
Eco91I	GGTNACC	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	250
EcoNI	CCTNNNNNAGG	2 cut(s)	297, 599
EcoO65I	GGTNACC	1 cut(s)	84
EcoRII	CCWGG	2 cut(s)	91, 672
EcoT14I	CCWWGG	2 cut(s)	62, 656
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	2 cut(s)	62, 656
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	6 cut(s)	66, 193, 199, 373, 660, 667
FatI	CATG	6 cut(s)	62, 189, 195, 369, 656, 663
Fnu4HI	GCNGC	3 cut(s)	243, 477, 480
FokI	GGATG	1 cut(s)	572
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	3 cut(s)	243, 477, 480
FspBI	CTAG	1 cut(s)	537
FspI	TGCGCA	1 cut(s)	374
GlaI	GCGC	3 cut(s)	304, 374, 511
GluI	GCNGC	3 cut(s)	243, 477, 480
HaeII	RGCGCY	1 cut(s)	513
HaeIII	GGCC	2 cut(s)	289, 464
HhaI	GCGC	3 cut(s)	305, 375, 512
Hin1II	CATG	6 cut(s)	66, 193, 199, 373, 660, 667
Hin6I	GCGC	3 cut(s)	303, 373, 510
HinP1I	GCGC	3 cut(s)	303, 373, 510
Hpy188I	TCNGA	2 cut(s)	119, 346
Hpy188III	TCNNGA	4 cut(s)	56, 259, 296, 664
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	293, 605
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4V	TGCA	4 cut(s)	32, 193, 384, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 370, 381
HpyF3I	CTNAG	4 cut(s)	398, 506, 513, 678
Hsp92II	CATG	6 cut(s)	66, 193, 199, 373, 660, 667
HspAI	GCGC	3 cut(s)	303, 373, 510
KpnI	GGTACC	1 cut(s)	673
Kzo9I	GATC	2 cut(s)	502, 660
LguI	GCTCTTC	1 cut(s)	257
Lsp1109I	GCAGC	3 cut(s)	254, 466, 488
MaeI	CTAG	1 cut(s)	537
MaeIII	GTNAC	2 cut(s)	84, 646
MalI	GATC	2 cut(s)	504, 662
MboI	GATC	2 cut(s)	502, 660
MboII	GAAGA	5 cut(s)	88, 91, 244, 452, 651
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	3 cut(s)	13, 27, 415
MseI	TTAA	2 cut(s)	468, 585
MslI	CAYNNNNRTG	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	479
MspR9I	CCNGG	2 cut(s)	93, 674
MvaI	CCWGG	2 cut(s)	93, 674
MwoI	GCNNNNNNNGC	3 cut(s)	38, 370, 381
NcoI	CCATGG	2 cut(s)	62, 656
NdeII	GATC	2 cut(s)	502, 660
NlaIII	CATG	6 cut(s)	66, 193, 199, 373, 660, 667
NlaIV	GGNNCC	3 cut(s)	60, 671, 687
NmeAIII	GCCGAG	1 cut(s)	271
NsbI	TGCGCA	1 cut(s)	374
NspI	RCATGY	2 cut(s)	199, 373
PaeR7I	CTCGAG	1 cut(s)	389
PagI	TCATGA	1 cut(s)	663
PciSI	GCTCTTC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PkrI	GCNGC	3 cut(s)	244, 478, 481
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	91, 672
PspEI	GGTNACC	1 cut(s)	84
PspGI	CCWGG	2 cut(s)	91, 672
PspN4I	GGNNCC	3 cut(s)	60, 671, 687
PspPI	GGNCC	1 cut(s)	95
PspXI	VCTCGAGB	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	1 cut(s)	671
RsaNI	GTAC	1 cut(s)	670
RseI	CAYNNNNRTG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	468, 585
SatI	GCNGC	3 cut(s)	243, 477, 480
Sau3AI	GATC	2 cut(s)	502, 660
Sau96I	GGNCC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	93, 674
SduI	GDGCHC	1 cut(s)	252
Sfr274I	CTCGAG	1 cut(s)	389
SinI	GGWCC	1 cut(s)	95
SlaI	CTCGAG	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	3 cut(s)	237, 257, 389
SmoI	CTYRAG	3 cut(s)	237, 257, 389
SpeI	ACTAGT	1 cut(s)	536
Sse9I	AATT	3 cut(s)	13, 27, 415
SspMI	CTAG	1 cut(s)	537
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	91, 672
StyI	CCWWGG	2 cut(s)	62, 656
TaaI	ACNGT	1 cut(s)	583
TaqI	TCGA	2 cut(s)	390, 501
TasI	AATT	3 cut(s)	13, 27, 415
Tru1I	TTAA	2 cut(s)	468, 585
Tru9I	TTAA	2 cut(s)	468, 585
TscAI	CASTG	2 cut(s)	686, 696
TseI	GCWGC	3 cut(s)	242, 476, 479
TspDTI	ATGAA	2 cut(s)	445, 605
TspRI	CASTG	2 cut(s)	686, 696
VpaK11BI	GGWCC	1 cut(s)	95
XagI	CCTNNNNNAGG	2 cut(s)	297, 599
XceI	RCATGY	2 cut(s)	199, 373
XhoI	CTCGAG	1 cut(s)	389
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.