Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Reverse (-)

38615682 .. 38617010

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG305800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCACATGCGTTTAGGTCTCGTGTCTGCCATCGTCGTCTCCTCCCCTCAAGCAGCCGAGCTCTTCCTCAAGACCCACGACCTTGTTTTCGCAAGCAGGCCACCTCACGAAGGCGCAAAGCACATCTCTTTCGGACAGAGGAACTTGACCTTTTCCAAGTATGGCTCTTATTGGCGAGACATGCGCAAGATGTGCACCCTCGAGTTGCTCAGCAACCACAAAATCAATTCTTTCAAGGAAATGAGGAGAGAAGAGATTGTCCTTTTCAAAGAGGCCATTAAAGAGGCAGCTGCAACCAGCCACGAACCAGTCGATCTCAGCTCTATGGTGTCATCTCTTAGTGCGGATATGAGCTGCAGGATGGTGTTTGGAAAGAAGTACACGGATAAAGAATTCGACGACAAGGGTTTCAAGTCTGTGATTCAACAAGGCAAACAATTAGCAGCTGCACCTAACTTGGGCGATTACATCCCTTGTATTGCTCCACTTGACCTCCAAGGTTTCACTAAGCGCATGAAGGCTATTAACAAGGTGTTTGATGACTTTTTCGAGAAGATTATTGATGAACATCTCCAGTCGAATGATGAGGGAAAGACGAAGGACTTTGTTGATGTAATGCTCAGCTTTATGGGGACTCAAGAATCTGAATACCTGATTGAACGCTCCAATATCAAAGCAATCATTTTGGTAAGTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

232

Amino Acids

26.34

Weight (kDa)

7.06

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 227	2.3e-26	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	185
AciI	CCGC	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	392
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	2 cut(s)	110, 458
AgsI	TTSAA	5 cut(s)	235, 268, 412, 425, 659
AluBI	AGCT	6 cut(s)	61, 290, 321, 354, 446, 624
AluI	AGCT	6 cut(s)	61, 290, 321, 354, 446, 624
Alw21I	GWGCWC	2 cut(s)	63, 197
Alw26I	GTCTC	3 cut(s)	23, 43, 171
Alw44I	GTGCAC	1 cut(s)	193
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	2 cut(s)	98, 273
ApaLI	GTGCAC	1 cut(s)	193
ApeKI	GCWGC	6 cut(s)	53, 287, 290, 354, 443, 446
ApoI	RAATTY	1 cut(s)	392
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AspLEI	GCGC	3 cut(s)	116, 186, 513
AvaI	CYCGRG	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	1 cut(s)	20
Bbv12I	GWGCWC	2 cut(s)	63, 197
BbvI	GCAGC	6 cut(s)	65, 277, 299, 341, 433, 455
BccI	CCATC	2 cut(s)	38, 355
BcoDI	GTCTC	3 cut(s)	23, 43, 171
BfaI	CTAG	1 cut(s)	697
BfmI	CTRYAG	1 cut(s)	355
BisI	GCNGC	6 cut(s)	54, 288, 291, 355, 444, 447
BlpI	GCTNAGC	2 cut(s)	209, 620
BlsI	GCNGC	6 cut(s)	55, 289, 292, 356, 445, 448
BmeT110I	CYCGRG	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	557
Bpu1102I	GCTNAGC	2 cut(s)	209, 620
BpuEI	CTTGAG	3 cut(s)	33, 53, 621
BsaBI	GATNNNNATC	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	496
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 458
Bse1I	ACTGG	2 cut(s)	308, 574
Bse8I	GATNNNNATC	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	496
BseGI	GGATG	2 cut(s)	366, 468
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	2 cut(s)	110, 458
BseMII	CTCAG	3 cut(s)	223, 331, 634
BseNI	ACTGG	2 cut(s)	308, 574
BseRI	GAGGAG	2 cut(s)	31, 259
BseSI	GKGCMC	1 cut(s)	197
BseXI	GCAGC	6 cut(s)	65, 277, 299, 341, 433, 455
BsgI	GTGCAG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	100, 275
BsiHKAI	GWGCWC	2 cut(s)	63, 197
BsiHKCI	CYCGRG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	2 cut(s)	110, 458
BsmAI	GTCTC	3 cut(s)	23, 43, 171
BsmBI	CGTCTC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	646
BsnI	GGCC	2 cut(s)	100, 275
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	63, 197
Bsp143I	GATC	1 cut(s)	313
Bsp1720I	GCTNAGC	2 cut(s)	209, 620
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	2 cut(s)	100, 275
BspCNI	CTCAG	3 cut(s)	222, 330, 633
BspMAI	CTGCAG	1 cut(s)	359
BspQI	GCTCTTC	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	308, 574
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	1 cut(s)	313
BssSI	CACGAG	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	496
Bst2BI	CACGAG	1 cut(s)	20
Bst6I	CTCTTC	2 cut(s)	68, 246
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	94, 98
BstDEI	CTNAG	5 cut(s)	209, 317, 338, 507, 620
BstENI	CCTNNNNNAGG	1 cut(s)	108
BstF5I	GGATG	2 cut(s)	366, 468
BstHHI	GCGC	3 cut(s)	116, 186, 513
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	3 cut(s)	23, 43, 171
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 192
BstNSI	RCATGY	2 cut(s)	10, 184
BstSFI	CTRYAG	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	197
BstV1I	GCAGC	6 cut(s)	65, 277, 299, 341, 433, 455
BsuRI	GGCC	2 cut(s)	100, 275
BtsCI	GGATG	2 cut(s)	366, 468
Cac8I	GCNNGC	2 cut(s)	94, 98
CfoI	GCGC	3 cut(s)	116, 186, 513
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	3 cut(s)	7, 181, 514
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	5 cut(s)	209, 317, 338, 507, 620
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	68, 246
EarI	CTCTTC	2 cut(s)	68, 246
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	496
Eco24I	GRGCYC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	23
Eco53kI	GAGCTC	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	200
EcoICRI	GAGCTC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	108
EcoRI	GAATTC	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	496
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	496
Esp3I	CGTCTC	1 cut(s)	43
FaeI	CATG	3 cut(s)	10, 184, 517
FaiI	YATR	7 cut(s)	8, 162, 182, 326, 350, 515, 629
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	3 cut(s)	6, 180, 513
Fnu4HI	GCNGC	6 cut(s)	54, 288, 291, 355, 444, 447
FokI	GGATG	2 cut(s)	373, 455
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	6 cut(s)	54, 288, 291, 355, 444, 447
FspBI	CTAG	1 cut(s)	697
FspI	TGCGCA	1 cut(s)	185
GlaI	GCGC	3 cut(s)	115, 185, 512
GluI	GCNGC	6 cut(s)	54, 288, 291, 355, 444, 447
GsuI	CTGGAG	1 cut(s)	557
HaeIII	GGCC	2 cut(s)	100, 275
HhaI	GCGC	3 cut(s)	116, 186, 513
Hin1II	CATG	3 cut(s)	10, 184, 517
Hin6I	GCGC	3 cut(s)	114, 184, 511
HinP1I	GCGC	3 cut(s)	114, 184, 511
HinfI	GANTC	3 cut(s)	421, 634, 641
Hpy166II	GTNNAC	2 cut(s)	195, 381
Hpy188I	TCNGA	2 cut(s)	134, 646
Hpy188III	TCNNGA	4 cut(s)	70, 107, 550, 638
Hpy8I	GTNNAC	2 cut(s)	195, 381
Hpy99I	CGWCG	2 cut(s)	38, 401
HpyAV	CCTTC	3 cut(s)	104, 511, 592
HpyCH4V	TGCA	5 cut(s)	4, 195, 293, 357, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 192
HpyF3I	CTNAG	5 cut(s)	209, 317, 338, 507, 620
Hsp92II	CATG	3 cut(s)	10, 184, 517
HspAI	GCGC	3 cut(s)	114, 184, 511
Kzo9I	GATC	1 cut(s)	313
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	2 cut(s)	487, 668
LpnPI	CCDG	6 cut(s)	82, 310, 321, 343, 587, 665
Lsp1109I	GCAGC	6 cut(s)	65, 277, 299, 341, 433, 455
MaeI	CTAG	1 cut(s)	697
MaeIII	GTNAC	1 cut(s)	692
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	3 cut(s)	55, 263, 565
MhlI	GDGCHC	2 cut(s)	63, 197
MluCI	AATT	3 cut(s)	226, 392, 437
MlyI	GAGTC	1 cut(s)	628
MseI	TTAA	2 cut(s)	279, 525
MspA1I	CMGCKG	2 cut(s)	290, 446
MwoI	GCNNNNNNNGC	2 cut(s)	181, 192
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	3 cut(s)	10, 184, 517
NmeAIII	GCCGAG	1 cut(s)	82
NsbI	TGCGCA	1 cut(s)	185
NspI	RCATGY	2 cut(s)	10, 184
PaeR7I	CTCGAG	1 cut(s)	200
PciSI	GCTCTTC	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	421, 641
PkrI	GCNGC	6 cut(s)	55, 289, 292, 356, 445, 448
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
Psp124BI	GAGCTC	1 cut(s)	63
PspXI	VCTCGAGB	1 cut(s)	200
PstI	CTGCAG	1 cut(s)	359
PvuII	CAGCTG	2 cut(s)	290, 446
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	279, 525
SatI	GCNGC	6 cut(s)	54, 288, 291, 355, 444, 447
Sau3AI	GATC	1 cut(s)	313
SchI	GAGTC	1 cut(s)	628
SduI	GDGCHC	2 cut(s)	63, 197
SfcI	CTRYAG	1 cut(s)	355
Sfr274I	CTCGAG	1 cut(s)	200
SlaI	CTCGAG	1 cut(s)	200
SmlI	CTYRAG	4 cut(s)	48, 68, 200, 636
SmoI	CTYRAG	4 cut(s)	48, 68, 200, 636
Sse9I	AATT	3 cut(s)	226, 392, 437
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	1 cut(s)	697
SstI	GAGCTC	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	496
TaqI	TCGA	5 cut(s)	201, 312, 396, 549, 578
TasI	AATT	3 cut(s)	226, 392, 437
TatI	WGTACW	1 cut(s)	378
TfiI	GAWTC	2 cut(s)	421, 641
Tru1I	TTAA	2 cut(s)	279, 525
Tru9I	TTAA	2 cut(s)	279, 525
TseI	GCWGC	6 cut(s)	53, 287, 290, 354, 443, 446
TspDTI	ATGAA	2 cut(s)	530, 579
TspGWI	ACGGA	1 cut(s)	398
VneI	GTGCAC	1 cut(s)	193
XagI	CCTNNNNNAGG	1 cut(s)	108
XapI	RAATTY	1 cut(s)	392
XceI	RCATGY	2 cut(s)	10, 184
XhoI	CTCGAG	1 cut(s)	200
XspI	CTAG	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.