Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008148.1

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Reverse (-)

238598 .. 238948

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008148.1_g000057.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgagctgcaggatggtgtttgggaagaagtacgaggataacgaattcgatgacaagggtttcaagtctgtgattcaacaaggcttgcaattagcagctgcacctaacttgggggattacatcccttgtattgctccacttgacctccaagggttcactaagcgcatgaaggccgttaacaaggtgtttgatgactttttcgagaagattattgatgaacatcttcaatcgagggatgagggaaagacgaaggactttgttgatgtaatgctcagctttatagggactcaagaatctgaatacctaattgaacgctccaatatcaaagcaatcattttggtaagtaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

116

Amino Acids

13.25

Weight (kDa)

4.97

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	44
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	4 cut(s)	64, 77, 227, 311
AluBI	AGCT	3 cut(s)	6, 98, 276
AluI	AGCT	3 cut(s)	6, 98, 276
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	3 cut(s)	6, 95, 98
ApoI	RAATTY	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	85, 107
BccI	CCATC	1 cut(s)	7
BceAI	ACGGC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	349
BfmI	CTRYAG	1 cut(s)	7
BisI	GCNGC	3 cut(s)	7, 96, 99
BlpI	GCTNAGC	1 cut(s)	272
BlsI	GCNGC	3 cut(s)	8, 97, 100
Bpu1102I	GCTNAGC	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	273
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse8I	GATNNNNATC	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	3 cut(s)	18, 120, 241
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMII	CTCAG	1 cut(s)	286
BseXI	GCAGC	2 cut(s)	85, 107
BsgI	GTGCAG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	173
Bsp1720I	GCTNAGC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	2 cut(s)	159, 272
BstF5I	GGATG	3 cut(s)	18, 120, 241
BstHHI	GCGC	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	7
BstV1I	GCAGC	2 cut(s)	85, 107
BsuRI	GGCC	1 cut(s)	173
BtsCI	GGATG	3 cut(s)	18, 120, 241
Cac8I	GCNNGC	1 cut(s)	86
CfoI	GCGC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	5 cut(s)	6, 84, 98, 173, 276
CviKI_1	RGCY	5 cut(s)	6, 84, 98, 173, 276
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	159, 272
Eco130I	CCWWGG	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	1 cut(s)	169
FaiI	YATR	2 cut(s)	167, 281
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	1 cut(s)	165
Fnu4HI	GCNGC	3 cut(s)	7, 96, 99
FokI	GGATG	3 cut(s)	25, 107, 248
Fsp4HI	GCNGC	3 cut(s)	7, 96, 99
FspBI	CTAG	1 cut(s)	349
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	3 cut(s)	7, 96, 99
HaeIII	GGCC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	3 cut(s)	73, 286, 293
HpaI	GTTAAC	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	156, 178
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	2 cut(s)	202, 290
Hpy8I	GTNNAC	2 cut(s)	156, 178
HpyAV	CCTTC	2 cut(s)	163, 244
HpyCH4V	TGCA	3 cut(s)	9, 88, 101
HpyF3I	CTNAG	2 cut(s)	159, 272
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	1 cut(s)	163
KspAI	GTTAAC	1 cut(s)	178
LmnI	GCTCC	2 cut(s)	139, 320
Lsp1109I	GCAGC	2 cut(s)	85, 107
MaeI	CTAG	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	344
MboII	GAAGA	3 cut(s)	37, 215, 217
MluCI	AATT	3 cut(s)	44, 89, 306
MlyI	GAGTC	1 cut(s)	280
MnlI	CCTC	4 cut(s)	28, 155, 225, 232
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	98
NlaIII	CATG	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	73, 293
PkrI	GCNGC	3 cut(s)	8, 97, 100
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	3 cut(s)	7, 96, 99
SchI	GAGTC	1 cut(s)	280
SetI	ASST	7 cut(s)	8, 100, 106, 147, 186, 278, 306
SfcI	CTRYAG	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
Sse9I	AATT	3 cut(s)	44, 89, 306
SspMI	CTAG	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	148
TaqI	TCGA	3 cut(s)	48, 201, 230
TasI	AATT	3 cut(s)	44, 89, 306
TfiI	GAWTC	2 cut(s)	73, 293
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseI	GCWGC	3 cut(s)	6, 95, 98
TspDTI	ATGAA	2 cut(s)	182, 231
XapI	RAATTY	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.