Rmu_co8474237.1_g000001

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8474237.1
OG0000398
Physical Location & Seq
Reverse (-)
1 .. 941
941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8474237.1_g000001.1.cds

Sequence Viewer

Length: 882 bp
atgggttggatttgggcaattgggttgcttgctattgtttatgtactgcaagcatggatttccaaaagcaataacaagaagatcaaaaaattacctcccggtccaagagggtttcctattctcggaaacctcctcatgttaggggagttccctcatgtcgatcttcaccgactagcccaaaagcacggtgacatcatgcacctgcgcttaggcctggtgcctaccattgttgtctcatcccctcaagcggctgagttgtttcttaaaacgcacgacctagcttttgccactaggccaccgcatgaagctgcaaagcacatttcttatggccaaaggaacttatcctatgccgagtatgggtcttattggcgcaccattcgcaagatgtgcacccttgaattactcagcaaccataaaatcaattctttcaagtccatgaggaaagaagagcttgatcttttcattaacttcatccgagaggcttcccacgatcatgctacggttgatctcagcgccaaggtttcgtctctcaatgcagacatgacgtgccgaatggtgtttggaaagaagtacacggataaggaatttgatgagaagggtttccaggcttggattcaagagggtatgcatctagcaggcacccccaactttggagactaccttccttttcttgctccatttgacctccaaggtttaactaagcgaatgaaggctgttagcaaggtgtttggtgacttttttgagaagataattgacgagcacatcgaatctcaggatgatccagaaaggaccaaagactttgtcgatgtcatgttgggtttcatgggatcgcaagaatctgagtacaaaattgaacgctccaatatcaaagccataattctg

Protein Analysis

294

Amino Acids

33.59

Weight (kDa)

8.36

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 210
Acc36I ACCTGC 1 cut(s) 210
AccB1I GGYRCC 2 cut(s) 217, 638
AciI CCGC 2 cut(s) 248, 299
AclWI GGATC 2 cut(s) 773, 835
AcoI YGGCCR 1 cut(s) 328
AcsI RAATTY 1 cut(s) 584
AfaI GTAC 3 cut(s) 45, 572, 845
AfiI CCNNNNNNNGG 4 cut(s) 122, 247, 357, 650
AgsI TTSAA 4 cut(s) 398, 430, 617, 854
AjiI CACGTC 1 cut(s) 546
AjnI CCWGG 2 cut(s) 213, 603
AluBI AGCT 3 cut(s) 281, 308, 451
AluI AGCT 3 cut(s) 281, 308, 451
Alw21I GWGCWC 2 cut(s) 392, 762
Alw26I GTCTC 3 cut(s) 238, 531, 648
Alw44I GTGCAC 1 cut(s) 388
AlwI GGATC 2 cut(s) 773, 835
AoxI GGCC 3 cut(s) 211, 293, 328
ApaLI GTGCAC 1 cut(s) 388
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 584
ArsI GACNNNNNNTTYG 4 cut(s) 266, 298, 786, 818
Asp700I GAANNNNTTC 1 cut(s) 599
AspLEI GCGC 3 cut(s) 207, 372, 515
AspS9I GGNCC 2 cut(s) 101, 789
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 3 cut(s) 158, 200, 743
AvaII GGWCC 2 cut(s) 101, 789
BaeGI GKGCMC 1 cut(s) 392
BalI TGGCCA 1 cut(s) 330
BanI GGYRCC 2 cut(s) 217, 638
Bbv12I GWGCWC 2 cut(s) 392, 762
BbvI GCAGC 1 cut(s) 295
BciT130I CCWGG 2 cut(s) 215, 605
BcnI CCSGG 1 cut(s) 99
BcoDI GTCTC 3 cut(s) 238, 531, 648
BfaI CTAG 4 cut(s) 173, 278, 291, 632
BfoI RGCGCY 1 cut(s) 516
BfuAI ACCTGC 1 cut(s) 210
BisI GCNGC 2 cut(s) 249, 309
BlsI GCNGC 2 cut(s) 250, 310
Bme1390I CCNGG 3 cut(s) 99, 215, 605
Bme18I GGWCC 2 cut(s) 101, 789
BmgBI CACGTC 1 cut(s) 546
BmgT120I GGNCC 2 cut(s) 101, 789
BmiI GGNNCC 2 cut(s) 219, 640
BmrFI CCNGG 3 cut(s) 99, 215, 605
BmsI GCATC 1 cut(s) 637
Bpu10I CCTNAGC 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 516, 688
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 247, 357, 650
BseBI CCWGG 2 cut(s) 215, 605
BseDI CCNNGG 2 cut(s) 516, 688
BseGI GGATG 3 cut(s) 236, 471, 781
BseLI CCNNNNNNNGG 4 cut(s) 122, 247, 357, 650
BseMII CTCAG 5 cut(s) 243, 418, 523, 785, 831
BseRI GAGGAG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 392
BseXI GCAGC 1 cut(s) 295
BshFI GGCC 3 cut(s) 213, 295, 330
BshNI GGYRCC 2 cut(s) 217, 638
BsiHKAI GWGCWC 2 cut(s) 392, 762
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 4 cut(s) 122, 247, 357, 650
BsmAI GTCTC 3 cut(s) 238, 531, 648
BsmBI CGTCTC 1 cut(s) 531
BsnI GGCC 3 cut(s) 213, 295, 330
Bsp1286I GDGCHC 2 cut(s) 392, 762
Bsp143I GATC 7 cut(s) 81, 160, 454, 490, 505, 778, 827
BspACI CCGC 2 cut(s) 248, 299
BspANI GGCC 3 cut(s) 213, 295, 330
BspCNI CTCAG 5 cut(s) 244, 417, 522, 784, 832
BspLI GGNNCC 2 cut(s) 219, 640
BspMI ACCTGC 1 cut(s) 210
BspPI GGATC 2 cut(s) 773, 835
BspQI GCTCTTC 1 cut(s) 441
BspT107I GGYRCC 2 cut(s) 217, 638
BssECI CCNNGG 2 cut(s) 516, 688
BssMI GATC 7 cut(s) 81, 160, 454, 490, 505, 778, 827
BssT1I CCWWGG 2 cut(s) 516, 688
Bst2UI CCWGG 2 cut(s) 215, 605
Bst4CI ACNGT 2 cut(s) 188, 502
Bst6I CTCTTC 1 cut(s) 441
BstAPI GCANNNNNTGC 1 cut(s) 387
BstC8I GCNNGC 3 cut(s) 30, 51, 637
BstDEI CTNAG 7 cut(s) 208, 252, 404, 509, 699, 771, 840
BstF5I GGATG 3 cut(s) 236, 471, 781
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 3 cut(s) 207, 372, 515
BstKTI GATC 7 cut(s) 84, 163, 457, 493, 508, 781, 830
BstMAI GTCTC 3 cut(s) 238, 531, 648
BstMBI GATC 7 cut(s) 81, 160, 454, 490, 505, 778, 827
BstMWI GCNNNNNNNGC 2 cut(s) 378, 387
BstNI CCWGG 2 cut(s) 215, 605
BstSCI CCNGG 3 cut(s) 97, 213, 603
BstSLI GKGCMC 1 cut(s) 392
BstV1I GCAGC 1 cut(s) 295
BsuRI GGCC 3 cut(s) 213, 295, 330
BtrI CACGTC 1 cut(s) 546
BtsCI GGATG 3 cut(s) 236, 471, 781
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 3 cut(s) 30, 51, 637
CfoI GCGC 3 cut(s) 207, 372, 515
Cfr13I GGNCC 2 cut(s) 101, 789
Csp6I GTAC 3 cut(s) 44, 571, 844
CviQI GTAC 3 cut(s) 44, 571, 844
DdeI CTNAG 7 cut(s) 208, 252, 404, 509, 699, 771, 840
DpnI GATC 7 cut(s) 83, 162, 456, 492, 507, 780, 829
DpnII GATC 7 cut(s) 81, 160, 454, 490, 505, 778, 827
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
Eco130I CCWWGG 2 cut(s) 516, 688
Eco147I AGGCCT 1 cut(s) 213
Eco47I GGWCC 2 cut(s) 101, 789
EcoRII CCWGG 2 cut(s) 213, 603
EcoT14I CCWWGG 2 cut(s) 516, 688
EcoT22I ATGCAT 1 cut(s) 630
ErhI CCWWGG 2 cut(s) 516, 688
Esp3I CGTCTC 1 cut(s) 531
FalI AAGNNNNNCTT 2 cut(s) 435, 467
Fnu4HI GCNGC 2 cut(s) 249, 309
FokI GGATG 3 cut(s) 223, 458, 788
Fsp4HI GCNGC 2 cut(s) 249, 309
FspBI CTAG 4 cut(s) 173, 278, 291, 632
GlaI GCGC 3 cut(s) 206, 371, 514
GluI GCNGC 2 cut(s) 249, 309
HaeII RGCGCY 1 cut(s) 516
HaeIII GGCC 3 cut(s) 213, 295, 330
HapII CCGG 1 cut(s) 99
HhaI GCGC 3 cut(s) 207, 372, 515
Hin6I GCGC 3 cut(s) 205, 370, 513
HinP1I GCGC 3 cut(s) 205, 370, 513
HinfI GANTC 3 cut(s) 613, 767, 836
HpaII CCGG 1 cut(s) 99
HphI GGTGA 3 cut(s) 158, 200, 743
Hpy166II GTNNAC 2 cut(s) 390, 573
Hpy188I TCNGA 3 cut(s) 125, 476, 841
Hpy188III TCNNGA 3 cut(s) 617, 773, 782
Hpy8I GTNNAC 2 cut(s) 390, 573
HpyAV CCTTC 3 cut(s) 589, 671, 703
HpyCH4III ACNGT 2 cut(s) 188, 502
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 6 cut(s) 49, 199, 311, 390, 536, 628
HpyF10VI GCNNNNNNNGC 2 cut(s) 378, 387
HpyF3I CTNAG 7 cut(s) 208, 252, 404, 509, 699, 771, 840
HpySE526I ACGT 1 cut(s) 545
HspAI GCGC 3 cut(s) 205, 370, 513
Kzo9I GATC 7 cut(s) 81, 160, 454, 490, 505, 778, 827
LguI GCTCTTC 1 cut(s) 441
LmnI GCTCC 2 cut(s) 679, 863
LpnPI CCDG 9 cut(s) 112, 200, 215, 227, 590, 617, 621, 758, 795
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 1 cut(s) 637
MaeI CTAG 4 cut(s) 173, 278, 291, 632
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 2 cut(s) 188, 731
MalI GATC 7 cut(s) 83, 162, 456, 492, 507, 780, 829
MboI GATC 7 cut(s) 81, 160, 454, 490, 505, 778, 827
MboII GAAGA 4 cut(s) 91, 155, 458, 757
MfeI CAATTG 1 cut(s) 18
MhlI GDGCHC 2 cut(s) 392, 762
MlsI TGGCCA 1 cut(s) 330
MluCI AATT 8 cut(s) 18, 89, 398, 421, 584, 750, 849, 876
MluNI TGGCCA 1 cut(s) 330
Mox20I TGGCCA 1 cut(s) 330
Mph1103I ATGCAT 1 cut(s) 630
MroXI GAANNNNTTC 1 cut(s) 599
MscI TGGCCA 1 cut(s) 330
MseI TTAA 3 cut(s) 264, 465, 695
MslI CAYNNNNRTG 1 cut(s) 492
Msp20I TGGCCA 1 cut(s) 330
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 3 cut(s) 99, 215, 605
MunI CAATTG 1 cut(s) 18
MvaI CCWGG 2 cut(s) 215, 605
MwoI GCNNNNNNNGC 2 cut(s) 378, 387
NciI CCSGG 1 cut(s) 99
NdeII GATC 7 cut(s) 81, 160, 454, 490, 505, 778, 827
NlaIV GGNNCC 2 cut(s) 219, 640
NmeAIII GCCGAG 1 cut(s) 376
NmuCI GTSAC 2 cut(s) 188, 731
NsiI ATGCAT 1 cut(s) 630
PaqCI CACCTGC 1 cut(s) 210
PceI AGGCCT 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 441
PcsI WCGNNNNNNNCGW 1 cut(s) 762
PdmI GAANNNNTTC 1 cut(s) 599
PfeI GAWTC 3 cut(s) 613, 767, 836
PflFI GACNNNGTC 1 cut(s) 800
PkrI GCNGC 2 cut(s) 250, 310
Psp6I CCWGG 2 cut(s) 213, 603
PspGI CCWGG 2 cut(s) 213, 603
PspN4I GGNNCC 2 cut(s) 219, 640
PspPI GGNCC 2 cut(s) 101, 789
PsyI GACNNNGTC 1 cut(s) 800
RsaI GTAC 3 cut(s) 45, 572, 845
RsaNI GTAC 3 cut(s) 44, 571, 844
RseI CAYNNNNRTG 1 cut(s) 492
SapI GCTCTTC 1 cut(s) 441
SaqAI TTAA 3 cut(s) 264, 465, 695
SatI GCNGC 2 cut(s) 249, 309
Sau3AI GATC 7 cut(s) 81, 160, 454, 490, 505, 778, 827
Sau96I GGNCC 2 cut(s) 101, 789
ScrFI CCNGG 3 cut(s) 99, 215, 605
SduI GDGCHC 2 cut(s) 392, 762
SfaNI GCATC 1 cut(s) 637
SinI GGWCC 2 cut(s) 101, 789
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
Sse9I AATT 8 cut(s) 18, 89, 398, 421, 584, 750, 849, 876
SseBI AGGCCT 1 cut(s) 213
SsiI CCGC 2 cut(s) 248, 299
SspMI CTAG 4 cut(s) 173, 278, 291, 632
StuI AGGCCT 1 cut(s) 213
StyD4I CCNGG 3 cut(s) 97, 213, 603
StyI CCWWGG 2 cut(s) 516, 688
TaaI ACNGT 2 cut(s) 188, 502
TaiI ACGT 1 cut(s) 548
TaqI TCGA 3 cut(s) 159, 765, 804
TasI AATT 8 cut(s) 18, 89, 398, 421, 584, 750, 849, 876
TatI WGTACW 3 cut(s) 43, 570, 843
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 3 cut(s) 613, 767, 836
Tru1I TTAA 3 cut(s) 264, 465, 695
Tru9I TTAA 3 cut(s) 264, 465, 695
TseFI GTSAC 2 cut(s) 188, 731
TseI GCWGC 1 cut(s) 308
Tsp45I GTSAC 2 cut(s) 188, 731
TspDTI ATGAA 5 cut(s) 318, 451, 460, 722, 811
TspGWI ACGGA 1 cut(s) 590
Tth111I GACNNNGTC 1 cut(s) 800
VneI GTGCAC 1 cut(s) 388
VpaK11BI GGWCC 2 cut(s) 101, 789
XapI RAATTY 1 cut(s) 584
XmnI GAANNNNTTC 1 cut(s) 599
XspI CTAG 4 cut(s) 173, 278, 291, 632
Zsp2I ATGCAT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.