Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Reverse (-)

39625385 .. 39626169

Gene Structure 785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG310100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 491 bp

ATGAGGAGAGAAGAGGTTATCCTTTTCATAGAGGCCATTAAAGAGGCAGCTGCAACCAGCCACGAACCAGTCGATCTCAGCGCTAAGGTGTCATCTCTTAGTGCAGATATGAGCTGCAGGATGGTGTTTGGAAAGAGGTACGCGGATAAAGAATTTGACGACAAGGGTTTCAAGTCTGTGATTCAACAAGCCATACAATTAGCAGCTGCGCCTAACTTGGGCGATTACATCCCTTGTATTGCTCCACTTGACCTCCAAGGGTTCACTAAGCGCATGAAGGCTATTAACAAGGTGTTTGATGACTTTTTCGAGAAGATTATTGATGAACATCTTCAATCGAGGGATGAGGGAAAGACGAAGGACTTTGTTGATGTAATGCTCAGCTTTATGGGGACTCAAGAATCTGAATACCTAATTGAACGCTCCAATATCAAAGCAATCATTTTTGACATGCTTGTGGGGTCAATGGACACATCAGCAACAACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

163

Amino Acids

18.33

Weight (kDa)

4.89

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 163	4e-20	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	143
AciI	CCGC	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	1 cut(s)	140
AfeI	AGCGCT	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	4 cut(s)	172, 185, 335, 419
AluBI	AGCT	4 cut(s)	50, 114, 206, 384
AluI	AGCT	4 cut(s)	50, 114, 206, 384
Aor51HI	AGCGCT	1 cut(s)	82
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	5 cut(s)	47, 50, 114, 203, 206
ApoI	RAATTY	1 cut(s)	152
Asp700I	GAANNNNTTC	1 cut(s)	330
AspLEI	GCGC	3 cut(s)	83, 211, 273
BbvI	GCAGC	5 cut(s)	37, 59, 101, 193, 215
BccI	CCATC	1 cut(s)	115
BfmI	CTRYAG	1 cut(s)	115
BfoI	RGCGCY	1 cut(s)	84
BisI	GCNGC	5 cut(s)	48, 51, 115, 204, 207
BlpI	GCTNAGC	1 cut(s)	380
BlsI	GCNGC	5 cut(s)	49, 52, 116, 205, 208
Bpu10I	CCTNAGC	1 cut(s)	84
Bpu1102I	GCTNAGC	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	381
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	68
Bse8I	GATNNNNATC	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	3 cut(s)	126, 228, 349
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	91, 394
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	5 cut(s)	37, 59, 101, 193, 215
BsgI	GTGCAG	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	73
Bsp1720I	GCTNAGC	1 cut(s)	380
BspACI	CCGC	1 cut(s)	143
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	2 cut(s)	90, 393
BspFNI	CGCG	1 cut(s)	143
BspMAI	CTGCAG	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	6
BstDEI	CTNAG	5 cut(s)	77, 84, 98, 267, 380
BstF5I	GGATG	3 cut(s)	126, 228, 349
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	3 cut(s)	83, 211, 273
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstNSI	RCATGY	1 cut(s)	454
BstSFI	CTRYAG	1 cut(s)	115
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	5 cut(s)	37, 59, 101, 193, 215
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	3 cut(s)	126, 228, 349
CfoI	GCGC	3 cut(s)	83, 211, 273
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	2 cut(s)	274, 451
CviJI	RGCY	8 cut(s)	35, 50, 60, 114, 191, 206, 281, 384
CviKI_1	RGCY	8 cut(s)	35, 50, 60, 114, 191, 206, 281, 384
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	5 cut(s)	77, 84, 98, 267, 380
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	256
Eco47III	AGCGCT	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	2 cut(s)	277, 454
FaiI	YATR	6 cut(s)	29, 110, 194, 275, 389, 452
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	2 cut(s)	273, 450
Fnu4HI	GCNGC	5 cut(s)	48, 51, 115, 204, 207
FokI	GGATG	3 cut(s)	133, 215, 356
Fsp4HI	GCNGC	5 cut(s)	48, 51, 115, 204, 207
GlaI	GCGC	3 cut(s)	82, 210, 272
GluI	GCNGC	5 cut(s)	48, 51, 115, 204, 207
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	35
HhaI	GCGC	3 cut(s)	83, 211, 273
Hin1II	CATG	2 cut(s)	277, 454
Hin6I	GCGC	3 cut(s)	81, 209, 271
HinP1I	GCGC	3 cut(s)	81, 209, 271
HinfI	GANTC	3 cut(s)	181, 394, 401
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	2 cut(s)	310, 398
Hpy8I	GTNNAC	1 cut(s)	264
HpyAV	CCTTC	2 cut(s)	271, 352
HpyCH4V	TGCA	3 cut(s)	53, 104, 117
HpyF3I	CTNAG	5 cut(s)	77, 84, 98, 267, 380
Hsp92II	CATG	2 cut(s)	277, 454
HspAI	GCGC	3 cut(s)	81, 209, 271
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	247, 428
LpnPI	CCDG	3 cut(s)	70, 81, 103
Lsp1109I	GCAGC	5 cut(s)	37, 59, 101, 193, 215
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	3 cut(s)	23, 323, 325
MfeI	CAATTG	1 cut(s)	486
MluCI	AATT	4 cut(s)	152, 197, 414, 486
MlyI	GAGTC	1 cut(s)	388
MnlI	CCTC	7 cut(s)	7, 25, 37, 129, 263, 333, 340
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	2 cut(s)	39, 285
MslI	CAYNNNNRTG	1 cut(s)	455
MspA1I	CMGCKG	2 cut(s)	50, 206
MunI	CAATTG	1 cut(s)	486
MvnI	CGCG	1 cut(s)	143
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	277, 454
NspI	RCATGY	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	181, 401
PkrI	GCNGC	5 cut(s)	49, 52, 116, 205, 208
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PstI	CTGCAG	1 cut(s)	119
PvuII	CAGCTG	2 cut(s)	50, 206
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	39, 285
SatI	GCNGC	5 cut(s)	48, 51, 115, 204, 207
Sau3AI	GATC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	388
SfcI	CTRYAG	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
Sse9I	AATT	4 cut(s)	152, 197, 414, 486
SsiI	CCGC	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	256
TaqI	TCGA	3 cut(s)	72, 309, 338
TasI	AATT	4 cut(s)	152, 197, 414, 486
TfiI	GAWTC	2 cut(s)	181, 401
Tru1I	TTAA	2 cut(s)	39, 285
Tru9I	TTAA	2 cut(s)	39, 285
TseI	GCWGC	5 cut(s)	47, 50, 114, 203, 206
TspDTI	ATGAA	3 cut(s)	16, 290, 339
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	1 cut(s)	454
XmnI	GAANNNNTTC	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.