Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000698.1

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Reverse (-)

106512 .. 106910

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000698.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atggtagtgaaagaaaccttgaggctacatccagtggcacctttgttgcgtccccatgcatccactgaagattacattgttaatggcttccacgtgcccaaaaaagcgcacattatcataaacgtgtgggcaattggaagagaccccaatgcttggaccaatgcagacaagttcatacccaaaaggttttcagggagtaatatagacctgaggggaaatcactttcagcttattccatttggttcgtgtcgtagacgttgccctggaattcaattggggctagttgtggtcaagctagtattggcacaacttctgcattgtttcaattgggagcttccggatagtttgttaccagcagagttggacatgacggagcagtttggtctaactgttccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

132

Amino Acids

14.9

Weight (kDa)

8.96

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AccB7I	CCANNNNNTGG	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	253
AccIII	TCCGGA	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	267
AcuI	CTGAAG	1 cut(s)	87
AcvI	CACGTG	1 cut(s)	94
AfiI	CCNNNNNNNGG	1 cut(s)	153
AflIII	ACRYGT	1 cut(s)	123
AgsI	TTSAA	2 cut(s)	272, 325
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	3 cut(s)	229, 295, 334
AluI	AGCT	3 cut(s)	229, 295, 334
Alw26I	GTCTC	1 cut(s)	135
Aor13HI	TCCGGA	1 cut(s)	337
ApoI	RAATTY	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	156
AxyI	CCTNAGG	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	37
BbrPI	CACGTG	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	2 cut(s)	281, 296
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	40
BsaAI	YACGTR	1 cut(s)	94
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	32
Bse21I	CCTNAGG	1 cut(s)	209
BseAI	TCCGGA	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	2 cut(s)	28, 59
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	338
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	36
Bso31I	GGTCTC	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp13I	TCCGGA	1 cut(s)	337
BspCNI	CTCAG	1 cut(s)	201
BspEI	TCCGGA	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	1 cut(s)	133
BstBAI	YACGTR	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	28, 59
BstHHI	GCGC	1 cut(s)	109
BstMAI	GTCTC	1 cut(s)	135
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	262
BstSLI	GKGCMC	1 cut(s)	99
Bsu36I	CCTNAGG	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	28, 59
BtsIMutI	CAGTG	2 cut(s)	39, 63
CfoI	GCGC	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	156
CseI	GACGC	1 cut(s)	38
CviAII	CATG	3 cut(s)	56, 367, 396
CviJI	RGCY	6 cut(s)	25, 87, 229, 280, 295, 334
CviKI_1	RGCY	6 cut(s)	25, 87, 229, 280, 295, 334
DdeI	CTNAG	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	87
Eco72I	CACGTG	1 cut(s)	94
Eco81I	CCTNAGG	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	262
EcoT22I	ATGCAT	1 cut(s)	61
FaeI	CATG	3 cut(s)	59, 370, 399
FaiI	YATR	6 cut(s)	57, 119, 176, 203, 368, 397
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	3 cut(s)	55, 366, 395
FblI	GTMKAC	1 cut(s)	253
FokI	GGATG	2 cut(s)	15, 46
FspBI	CTAG	2 cut(s)	281, 296
GlaI	GCGC	1 cut(s)	108
HapII	CCGG	1 cut(s)	338
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	3 cut(s)	59, 370, 399
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HpaII	CCGG	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	1 cut(s)	254
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	3 cut(s)	93, 123, 256
HpyCH4V	TGCA	3 cut(s)	59, 164, 316
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	3 cut(s)	93, 123, 256
Hsp92II	CATG	3 cut(s)	59, 370, 399
HspAI	GCGC	1 cut(s)	107
Kpn2I	TCCGGA	1 cut(s)	337
LmnI	GCTCC	2 cut(s)	331, 373
LpnPI	CCDG	7 cut(s)	45, 177, 221, 249, 276, 351, 366
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	2 cut(s)	281, 296
MaeII	ACGT	3 cut(s)	93, 123, 256
MaeIII	GTNAC	1 cut(s)	348
MboII	GAAGA	2 cut(s)	80, 150
MfeI	CAATTG	3 cut(s)	132, 272, 325
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	4 cut(s)	132, 267, 272, 325
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	2 cut(s)	15, 204
Mph1103I	ATGCAT	1 cut(s)	61
MroI	TCCGGA	1 cut(s)	337
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	122
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	264
MunI	CAATTG	3 cut(s)	132, 272, 325
MvaI	CCWGG	1 cut(s)	264
NlaIII	CATG	3 cut(s)	59, 370, 399
NlaIV	GGNNCC	1 cut(s)	39
NsiI	ATGCAT	1 cut(s)	61
PflMI	CCANNNNNTGG	1 cut(s)	153
PmaCI	CACGTG	1 cut(s)	94
PmlI	CACGTG	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	262
PspCI	CACGTG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	156
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	99
SfaNI	GCATC	1 cut(s)	68
SinI	GGWCC	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	4 cut(s)	132, 267, 272, 325
SspMI	CTAG	2 cut(s)	281, 296
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	3 cut(s)	96, 126, 259
TasI	AATT	4 cut(s)	132, 267, 272, 325
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	2 cut(s)	39, 70
TspDTI	ATGAA	1 cut(s)	163
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	2 cut(s)	39, 70
Van91I	CCANNNNNTGG	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	156
XapI	RAATTY	1 cut(s)	267
XmiI	GTMKAC	1 cut(s)	253
XspI	CTAG	2 cut(s)	281, 296
Zsp2I	ATGCAT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.