Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001292.1

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Reverse (-)

26838 .. 27446

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001292.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgctcgcctcaatggactcatcagcaacaacaattgagtgggcagtctccgaactcatcaggcattcagaggtgatgatgaaagtgcaaatagagttagcaaatgtagtcggaatggagaggatggtggaggagtcagacttggagaagttggagtacttggacatggttgtgaaggaaaccttgaggctacatccggtagcaccattattgcttccccatcaatcaactgaagattgcactgttaatggcttccacatacccaaaaagccgtgcattatgataaatgtatggtcaattgggagagacccaaatgcttggactgaagcagagaagttcatacctgagaggttcgttgatagtagtatagatcttcggggaaaccactttgagcttcttccttttggctctggacgaaggcgctgccctggaattcaactaggcctaacggttgtccagttagtgctggcgcatcttgtgcattgttttatctgggaacttccagaaaacatgtcaccgactgatttggatatgacggaagaatttggaataacggttcctagggccaagcatctactggcaattccatcatatcgccttcacaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

202

Amino Acids

23.01

Weight (kDa)

5.45

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	432, 542
AcuI	CTGAAG	2 cut(s)	252, 345
AfaI	GTAC	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	1 cut(s)	437
AjnI	CCWGG	1 cut(s)	427
AloI	GAACNNNNNNTCC	2 cut(s)	540, 572
AluBI	AGCT	1 cut(s)	394
AluI	AGCT	1 cut(s)	394
Alw26I	GTCTC	2 cut(s)	52, 300
AoxI	GGCC	2 cut(s)	442, 564
ApeKI	GCWGC	1 cut(s)	423
ApoI	RAATTY	2 cut(s)	432, 542
AspA2I	CCTAGG	1 cut(s)	560
AspLEI	GCGC	2 cut(s)	423, 472
AspS9I	GGNCC	1 cut(s)	564
AsuHPI	GGTGA	2 cut(s)	85, 507
AvrII	CCTAGG	1 cut(s)	560
BarI	GAAGNNNNNNTAC	2 cut(s)	140, 172
BbvI	GCAGC	1 cut(s)	410
BccI	CCATC	3 cut(s)	118, 228, 595
BceAI	ACGGC	1 cut(s)	256
BcgI	CGANNNNNNTGC	2 cut(s)	405, 439
BciT130I	CCWGG	1 cut(s)	429
BcoDI	GTCTC	2 cut(s)	52, 300
BfaI	CTAG	2 cut(s)	440, 561
BfoI	RGCGCY	1 cut(s)	424
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	1 cut(s)	424
BlnI	CCTAGG	1 cut(s)	560
BlsI	GCNGC	1 cut(s)	425
BmcAI	AGTACT	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	429
BmgT120I	GGNCC	1 cut(s)	564
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	1 cut(s)	429
BmsI	GCATC	2 cut(s)	481, 580
BpuEI	CTTGAG	1 cut(s)	205
BsaI	GGTCTC	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	427, 560
BsaWI	WCCGGW	1 cut(s)	196
Bse1I	ACTGG	2 cut(s)	457, 582
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	427, 560
BseGI	GGATG	2 cut(s)	129, 193
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	2 cut(s)	457, 582
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	410
BshFI	GGCC	2 cut(s)	444, 566
BsiSI	CCGG	1 cut(s)	197
BsmAI	GTCTC	2 cut(s)	52, 300
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	444, 566
Bso31I	GGTCTC	1 cut(s)	300
Bsp143I	GATC	1 cut(s)	370
BspANI	GGCC	2 cut(s)	444, 566
BspCNI	CTCAG	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	558
BspTNI	GGTCTC	1 cut(s)	300
BsrI	ACTGG	2 cut(s)	457, 582
BssECI	CCNNGG	2 cut(s)	427, 560
BssMI	GATC	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	560
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	3 cut(s)	244, 451, 556
BstAPI	GCANNNNNTGC	1 cut(s)	478
BstC8I	GCNNGC	2 cut(s)	6, 468
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	2 cut(s)	129, 193
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	2 cut(s)	423, 472
BstKTI	GATC	1 cut(s)	373
BstMAI	GTCTC	2 cut(s)	52, 300
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	1 cut(s)	478
BstNI	CCWGG	1 cut(s)	429
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	1 cut(s)	427
BstV1I	GCAGC	1 cut(s)	410
BstX2I	RGATCY	1 cut(s)	370
BstXI	CCANNNNNNTGG	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	444, 566
BtsCI	GGATG	2 cut(s)	129, 193
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	6, 468
CfoI	GCGC	2 cut(s)	423, 472
Cfr13I	GGNCC	1 cut(s)	564
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	2 cut(s)	166, 511
CviJI	RGCY	7 cut(s)	190, 252, 271, 394, 408, 444, 566
CviKI_1	RGCY	7 cut(s)	190, 252, 271, 394, 408, 444, 566
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	560
Eco147I	AGGCCT	1 cut(s)	444
Eco31I	GGTCTC	1 cut(s)	300
Eco57I	CTGAAG	2 cut(s)	252, 345
EcoRI	GAATTC	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	560
ErhI	CCWWGG	1 cut(s)	560
FaeI	CATG	2 cut(s)	169, 514
FaiI	YATR	9 cut(s)	167, 260, 281, 292, 341, 368, 512, 533, 592
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FatI	CATG	2 cut(s)	165, 510
Fnu4HI	GCNGC	1 cut(s)	424
FokI	GGATG	2 cut(s)	136, 180
Fsp4HI	GCNGC	1 cut(s)	424
FspBI	CTAG	2 cut(s)	440, 561
GlaI	GCGC	2 cut(s)	422, 471
GluI	GCNGC	1 cut(s)	424
HaeII	RGCGCY	1 cut(s)	424
HaeIII	GGCC	2 cut(s)	444, 566
HapII	CCGG	1 cut(s)	197
HhaI	GCGC	2 cut(s)	423, 472
Hin1II	CATG	2 cut(s)	169, 514
Hin6I	GCGC	2 cut(s)	421, 470
HinP1I	GCGC	2 cut(s)	421, 470
HinfI	GANTC	2 cut(s)	17, 134
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	85, 507
Hpy188I	TCNGA	4 cut(s)	52, 70, 113, 139
Hpy188III	TCNNGA	2 cut(s)	411, 503
HpyAV	CCTTC	3 cut(s)	169, 411, 608
HpyCH4III	ACNGT	3 cut(s)	244, 451, 556
HpyCH4V	TGCA	4 cut(s)	88, 240, 276, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	478
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	169, 514
HspAI	GCGC	2 cut(s)	421, 470
Kzo9I	GATC	1 cut(s)	370
Lsp1109I	GCAGC	1 cut(s)	410
LweI	GCATC	2 cut(s)	481, 580
MaeI	CTAG	2 cut(s)	440, 561
MaeIII	GTNAC	1 cut(s)	513
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	4 cut(s)	245, 365, 389, 551
MfeI	CAATTG	2 cut(s)	33, 297
MflI	RGATCY	1 cut(s)	370
MluCI	AATT	5 cut(s)	33, 297, 432, 542, 582
MlyI	GAGTC	2 cut(s)	11, 143
MmeI	TCCRAC	2 cut(s)	91, 132
MnlI	CCTC	6 cut(s)	19, 64, 114, 124, 180, 342
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	170
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	429
MunI	CAATTG	2 cut(s)	33, 297
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	1 cut(s)	478
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	2 cut(s)	169, 514
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	1 cut(s)	513
NspI	RCATGY	1 cut(s)	514
PceI	AGGCCT	1 cut(s)	444
PciI	ACATGT	1 cut(s)	510
PctI	GAATGC	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	425
PleI	GAGTC	2 cut(s)	11, 142
PpsI	GAGTC	2 cut(s)	11, 142
PscI	ACATGT	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	1 cut(s)	564
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	424
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	1 cut(s)	564
ScaI	AGTACT	1 cut(s)	158
SchI	GAGTC	2 cut(s)	11, 143
ScrFI	CCNGG	1 cut(s)	429
SetI	ASST	5 cut(s)	75, 185, 346, 353, 396
SfaNI	GCATC	2 cut(s)	481, 580
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	5 cut(s)	33, 297, 432, 542, 582
SseBI	AGGCCT	1 cut(s)	444
SspMI	CTAG	2 cut(s)	440, 561
StuI	AGGCCT	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	1 cut(s)	560
TaaI	ACNGT	3 cut(s)	244, 451, 556
TasI	AATT	5 cut(s)	33, 297, 432, 542, 582
TatI	WGTACW	1 cut(s)	156
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	1 cut(s)	423
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	2 cut(s)	95, 328
TspGWI	ACGGA	1 cut(s)	551
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	2 cut(s)	432, 542
XceI	RCATGY	1 cut(s)	514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XmaJI	CCTAGG	1 cut(s)	560
XspI	CTAG	2 cut(s)	440, 561
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.