Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Reverse (-)

17155267 .. 17155722

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAAAAGCAAGAAGGAGAGGTTACCTCCTGGTCCAAGAGGGTTTCCTATTTTCGGAAGCCTCAACTTGTTAGGGGAGTTTCCTTACAAGGACCTGCACAGACTAGCTCAAAAGTATGGGGATATCATGCACATGTGTTTAGGCCTCATATCTGCCATCGTCGTCTCCTCCCCTCGAGCAGTCGAGCTCTTCCTCAAGACCCACGACCTTGTTTTCGCAAGCAGGCCACCTCACGAAGCCTTAAAGCACCTCTCTTTCGGGAAAAGAATGTGAGCTTTTCCAAGTATGGCTCTTACTGGCGTGACATGCGCAAGATGTGCACCCTCGAGTTGCTCAGCAACCACAAGATCAATTCTTTCAAGGAAATGAGGAGAGAAGAGGTTACCCTTTTGATAGAGTCCATTAAAGGAGCAGCTGCAACCAGCTACCAACTAGTCAATCTCAGCGCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

152

Amino Acids

17.46

Weight (kDa)

10.36

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	103
AfeI	AGCGCT	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	54
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	361
AhlI	ACTAGT	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	6 cut(s)	108, 188, 276, 416, 426, 453
AluI	AGCT	6 cut(s)	108, 188, 276, 416, 426, 453
Alw21I	GWGCWC	2 cut(s)	190, 323
Alw26I	GTCTC	1 cut(s)	170
Alw44I	GTGCAC	1 cut(s)	319
Ama87I	CYCGRG	2 cut(s)	175, 326
Aor51HI	AGCGCT	1 cut(s)	448
AoxI	GGCC	2 cut(s)	143, 225
ApaLI	GTGCAC	1 cut(s)	319
ApeKI	GCWGC	2 cut(s)	413, 416
ArsI	GACNNNNNNTTYG	2 cut(s)	198, 230
AspLEI	GCGC	2 cut(s)	312, 449
AspS9I	GGNCC	2 cut(s)	33, 92
AsuNHI	GCTAGC	1 cut(s)	449
AvaI	CYCGRG	2 cut(s)	175, 326
AvaII	GGWCC	2 cut(s)	33, 92
BaeGI	GKGCMC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	190
Bbv12I	GWGCWC	2 cut(s)	190, 323
BbvI	GCAGC	2 cut(s)	403, 425
BccI	CCATC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	170
BcuI	ACTAGT	1 cut(s)	433
BfaI	CTAG	3 cut(s)	105, 434, 450
BfoI	RGCGCY	1 cut(s)	450
BfuAI	ACCTGC	1 cut(s)	103
BisI	GCNGC	2 cut(s)	414, 417
BlpI	GCTNAGC	1 cut(s)	335
BlsI	GCNGC	2 cut(s)	415, 418
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	2 cut(s)	33, 92
BmeT110I	CYCGRG	2 cut(s)	175, 326
BmgT120I	GGNCC	2 cut(s)	33, 92
BmrFI	CCNGG	1 cut(s)	31
BmtI	GCTAGC	1 cut(s)	453
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
Bpu1102I	GCTNAGC	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	349
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	2 cut(s)	158, 385
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	2 cut(s)	403, 425
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	145, 227
BsiHKAI	GWGCWC	2 cut(s)	190, 323
BsiHKCI	CYCGRG	2 cut(s)	175, 326
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	170
BsmBI	CGTCTC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	145, 227
BsoBI	CYCGRG	2 cut(s)	175, 326
Bsp1286I	GDGCHC	2 cut(s)	190, 323
Bsp143I	GATC	1 cut(s)	348
Bsp1720I	GCTNAGC	1 cut(s)	335
BspANI	GGCC	2 cut(s)	145, 227
BspCNI	CTCAG	2 cut(s)	348, 456
BspMI	ACCTGC	1 cut(s)	103
BspOI	GCTAGC	1 cut(s)	453
BspQI	GCTCTTC	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	302
BssMI	GATC	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	31
Bst6I	CTCTTC	2 cut(s)	195, 372
BstAPI	GCANNNNNTGC	1 cut(s)	318
BstC8I	GCNNGC	3 cut(s)	221, 225, 451
BstDEI	CTNAG	2 cut(s)	335, 443
BstEII	GGTNACC	2 cut(s)	22, 382
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	2 cut(s)	312, 449
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 318
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	2 cut(s)	137, 310
BstPI	GGTNACC	2 cut(s)	22, 382
BstSCI	CCNGG	1 cut(s)	29
BstSLI	GKGCMC	1 cut(s)	323
BstV1I	GCAGC	2 cut(s)	403, 425
BsuRI	GGCC	2 cut(s)	145, 227
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	3 cut(s)	221, 225, 451
CfoI	GCGC	2 cut(s)	312, 449
Cfr13I	GGNCC	2 cut(s)	33, 92
CviAII	CATG	3 cut(s)	128, 134, 307
DdeI	CTNAG	2 cut(s)	335, 443
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
Eam1104I	CTCTTC	2 cut(s)	195, 372
EarI	CTCTTC	2 cut(s)	195, 372
Ecl136II	GAGCTC	1 cut(s)	188
Eco147I	AGGCCT	1 cut(s)	145
Eco24I	GRGCYC	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	33, 92
Eco47III	AGCGCT	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	188
Eco88I	CYCGRG	2 cut(s)	175, 326
Eco91I	GGTNACC	2 cut(s)	22, 382
EcoICRI	GAGCTC	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	92
EcoO65I	GGTNACC	2 cut(s)	22, 382
EcoRII	CCWGG	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	3 cut(s)	131, 137, 310
FaiI	YATR	6 cut(s)	118, 129, 135, 150, 288, 308
FatI	CATG	3 cut(s)	127, 133, 306
Fnu4HI	GCNGC	2 cut(s)	414, 417
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	2 cut(s)	414, 417
FspBI	CTAG	3 cut(s)	105, 434, 450
FspI	TGCGCA	1 cut(s)	311
GlaI	GCGC	2 cut(s)	311, 448
GluI	GCNGC	2 cut(s)	414, 417
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	145, 227
HhaI	GCGC	2 cut(s)	312, 449
Hin1II	CATG	3 cut(s)	131, 137, 310
Hin6I	GCGC	2 cut(s)	310, 447
HinP1I	GCGC	2 cut(s)	310, 447
HinfI	GANTC	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	3 cut(s)	197, 234, 260
Hpy8I	GTNNAC	1 cut(s)	321
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	1 cut(s)	8
HpyCH4V	TGCA	4 cut(s)	98, 131, 321, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 318
HpyF3I	CTNAG	2 cut(s)	335, 443
Hsp92II	CATG	3 cut(s)	131, 137, 310
HspAI	GCGC	2 cut(s)	310, 447
Kzo9I	GATC	1 cut(s)	348
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	410
LpnPI	CCDG	6 cut(s)	16, 43, 108, 209, 283, 436
Lsp1109I	GCAGC	2 cut(s)	403, 425
MaeI	CTAG	3 cut(s)	105, 434, 450
MaeIII	GTNAC	3 cut(s)	22, 302, 382
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	2 cut(s)	182, 389
MhlI	GDGCHC	2 cut(s)	190, 323
MluCI	AATT	1 cut(s)	352
MlyI	GAGTC	1 cut(s)	407
MseI	TTAA	2 cut(s)	243, 405
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	307, 318
NdeII	GATC	1 cut(s)	348
NheI	GCTAGC	1 cut(s)	449
NlaIII	CATG	3 cut(s)	131, 137, 310
NmuCI	GTSAC	1 cut(s)	302
NsbI	TGCGCA	1 cut(s)	311
NspI	RCATGY	2 cut(s)	137, 310
PaeR7I	CTCGAG	2 cut(s)	175, 326
PceI	AGGCCT	1 cut(s)	145
PciI	ACATGT	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	415, 418
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PpuMI	RGGWCCY	1 cut(s)	92
PscI	ACATGT	1 cut(s)	133
Psp124BI	GAGCTC	1 cut(s)	190
Psp5II	RGGWCCY	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	29
PspEI	GGTNACC	2 cut(s)	22, 382
PspGI	CCWGG	1 cut(s)	29
PspPI	GGNCC	2 cut(s)	33, 92
PspPPI	RGGWCCY	1 cut(s)	92
PspXI	VCTCGAGB	2 cut(s)	175, 326
PvuII	CAGCTG	1 cut(s)	416
RseI	CAYNNNNRTG	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	190
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	243, 405
SatI	GCNGC	2 cut(s)	414, 417
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	2 cut(s)	33, 92
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	2 cut(s)	190, 323
Sfr274I	CTCGAG	2 cut(s)	175, 326
SinI	GGWCC	2 cut(s)	33, 92
SlaI	CTCGAG	2 cut(s)	175, 326
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	3 cut(s)	175, 195, 326
SmoI	CTYRAG	3 cut(s)	175, 195, 326
SpeI	ACTAGT	1 cut(s)	433
Sse9I	AATT	1 cut(s)	352
SseBI	AGGCCT	1 cut(s)	145
SspMI	CTAG	3 cut(s)	105, 434, 450
SstI	GAGCTC	1 cut(s)	190
StuI	AGGCCT	1 cut(s)	145
StyD4I	CCNGG	1 cut(s)	29
TaqI	TCGA	3 cut(s)	176, 184, 327
TasI	AATT	1 cut(s)	352
Tru1I	TTAA	2 cut(s)	243, 405
Tru9I	TTAA	2 cut(s)	243, 405
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	2 cut(s)	413, 416
Tsp45I	GTSAC	1 cut(s)	302
VneI	GTGCAC	1 cut(s)	319
VpaK11BI	GGWCC	2 cut(s)	33, 92
XceI	RCATGY	2 cut(s)	137, 310
XhoI	CTCGAG	2 cut(s)	175, 326
XspI	CTAG	3 cut(s)	105, 434, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.