Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008148.1

Orthogroup ID

OG0000398

Physical Location & Seq

Genomic Coordinates Reverse (-)

239024 .. 239296

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008148.1_g000058.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atgcacatgcgtttaggcctcgtgtctgccatcatcgtctcctcccctcaagctgctgagctcttcctcaagacccacgaccttgttttcgcaagcaggccacctcacgaaggggcaaagcacatctctttcgggcagaggaacttgagcttttccaagtatggctcttattggcgagacatgcgcaagatgtgcacccttgagttgctcagcaaccacaaaatcaattctttcaaggaaatgaggagagaagaggttgctcttttcatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

90

Amino Acids

10.44

Weight (kDa)

9.8

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21960 FvH4_3g24140 FvH4_3g24150 FvH4_7g09230 FvH4_7g09260
malus_domestica	MD00G1169700.v1.1 MD00G1169800.v1.1 MD01G1016400.v1.1 MD03G1188000.v1.1 MD03G1188100.v1.1 MD11G1219700.v1.1 MD11G1219900.v1.1 MD11G1220200.v1.1 MD11G1220400.v1.1 MD11G1220600.v1.1
prunus_persica	Prupe.2G006500_v2.0.a1 Prupe.4G235500_v2.0.a1 Prupe.4G235600_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235700_v2.0.a1 Prupe.4G235800_v2.0.a1 Prupe.4G235900_v2.0.a1 Prupe.6G176500_v2.0.a1
pyrus_communis	pycom01g04750 pycom03g14060 pycom11g19360 pycom11g19370 pycom11g19380 pycom11g19390 pycom11g19400 pycom11g19460
rosa_chinensis	RchiOBHm_Chr1g0345321 RchiOBHm_Chr1g0345511 RchiOBHm_Chr1g0345781 RchiOBHm_Chr2g0115981 RchiOBHm_Chr5g0043151 RchiOBHm_Chr5g0043161 RchiOBHm_Chr5g0043901 RchiOBHm_Chr6g0274841
rosa_laevigata	RLG00000013516 RLG00000018229 RLG00000028840 RLG00000028923 RLG00000034169 RLG00000034223
rosa_multiflora	Rmu_co8474237.1_g000001 Rmu_sc0000698.1_g000004 Rmu_sc0000698.1_g000021 Rmu_sc0000698.1_g000023 Rmu_sc0000698.1_g000056 Rmu_sc0000698.1_g000057 Rmu_sc0000698.1_g000122 Rmu_sc0000698.1_g000123 Rmu_sc0000698.1_g000124 Rmu_sc0001292.1_g000005 Rmu_sc0001292.1_g000006 Rmu_sc0001349.1_g000002 Rmu_sc0001692.1_g000035 Rmu_sc0002079.1_g000035 Rmu_sc0002079.1_g000045 Rmu_sc0002329.1_g000017 Rmu_sc0008148.1_g000056 Rmu_sc0008148.1_g000057 Rmu_sc0008148.1_g000058 Rmu_sc0008148.1_g000062 Rmu_sc0008611.1_g000010 Rmu_sc0009227.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011260 Rroxscaffold_1G00037590 Rroxscaffold_2G00127610 Rroxscaffold_4G00309120 Rroxscaffold_7G00193880
rosa_rugosa	Rorug01G0177400 Rorug02G0202400 Rorug05G0204600 Rorug05G0209000 Rorug06G0085100 Rorug06G0085200
rosa_samantha	Rh1BG154400 Rh1DG186600 Rh2CG265200 Rh2DG267000 Rh5AG289700 Rh5AG289800 Rh5AG290000 Rh5AG293200 Rh5CG326500 Rh5DG305700 Rh5DG305800 Rh5DG310100 Rh6BG204200 Rh6CG204500 Rh6DG195700
rosa_wichuraiana	Rw1G016100 Rw1G016470 Rw2G020290 Rw5G026830 Rw5G026910 Rw5G026920 Rw5G026930 Rw6G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	1 cut(s)	235
AluBI	AGCT	3 cut(s)	53, 61, 150
AluI	AGCT	3 cut(s)	53, 61, 150
Alw21I	GWGCWC	2 cut(s)	63, 197
Alw26I	GTCTC	2 cut(s)	43, 171
Alw44I	GTGCAC	1 cut(s)	193
AoxI	GGCC	2 cut(s)	16, 98
ApaLI	GTGCAC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	53
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AspLEI	GCGC	1 cut(s)	186
BaeGI	GKGCMC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	1 cut(s)	20
Bbv12I	GWGCWC	2 cut(s)	63, 197
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	43, 171
BisI	GCNGC	1 cut(s)	54
BlpI	GCTNAGC	2 cut(s)	57, 209
BlsI	GCNGC	1 cut(s)	55
Bpu1102I	GCTNAGC	2 cut(s)	57, 209
BpuEI	CTTGAG	4 cut(s)	33, 53, 166, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMII	CTCAG	2 cut(s)	48, 223
BseRI	GAGGAG	2 cut(s)	31, 259
BseSI	GKGCMC	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	2 cut(s)	18, 100
BsiHKAI	GWGCWC	2 cut(s)	63, 197
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	2 cut(s)	43, 171
BsmBI	CGTCTC	1 cut(s)	43
BsnI	GGCC	2 cut(s)	18, 100
Bsp1286I	GDGCHC	2 cut(s)	63, 197
Bsp1720I	GCTNAGC	2 cut(s)	57, 209
BspANI	GGCC	2 cut(s)	18, 100
BspCNI	CTCAG	2 cut(s)	49, 222
BspQI	GCTCTTC	1 cut(s)	68
BssSI	CACGAG	1 cut(s)	20
Bst2BI	CACGAG	1 cut(s)	20
Bst6I	CTCTTC	2 cut(s)	68, 246
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	94, 98
BstDEI	CTNAG	2 cut(s)	57, 209
BstENI	CCTNNNNNAGG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	186
BstMAI	GTCTC	2 cut(s)	43, 171
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 192
BstNSI	RCATGY	2 cut(s)	10, 184
BstSLI	GKGCMC	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	18, 100
Cac8I	GCNNGC	2 cut(s)	94, 98
CfoI	GCGC	1 cut(s)	186
CviAII	CATG	2 cut(s)	7, 181
CviJI	RGCY	6 cut(s)	18, 53, 61, 100, 150, 165
CviKI_1	RGCY	6 cut(s)	18, 53, 61, 100, 150, 165
DdeI	CTNAG	2 cut(s)	57, 209
Eam1104I	CTCTTC	2 cut(s)	68, 246
EarI	CTCTTC	2 cut(s)	68, 246
Ecl136II	GAGCTC	1 cut(s)	61
Eco147I	AGGCCT	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	43
FaeI	CATG	2 cut(s)	10, 184
FaiI	YATR	5 cut(s)	8, 162, 182, 269, 271
FatI	CATG	2 cut(s)	6, 180
Fnu4HI	GCNGC	1 cut(s)	54
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	54
FspI	TGCGCA	1 cut(s)	185
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	18, 100
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	10, 184
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188III	TCNNGA	2 cut(s)	70, 107
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	1 cut(s)	104
HpyCH4V	TGCA	2 cut(s)	4, 195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 192
HpyF3I	CTNAG	2 cut(s)	57, 209
Hsp92II	CATG	2 cut(s)	10, 184
HspAI	GCGC	1 cut(s)	184
LguI	GCTCTTC	1 cut(s)	68
LpnPI	CCDG	1 cut(s)	82
Lsp1109I	GCAGC	1 cut(s)	40
MboII	GAAGA	2 cut(s)	55, 263
MhlI	GDGCHC	2 cut(s)	63, 197
MluCI	AATT	1 cut(s)	226
MnlI	CCTC	8 cut(s)	29, 52, 57, 77, 114, 132, 237, 247
MwoI	GCNNNNNNNGC	2 cut(s)	181, 192
NlaIII	CATG	2 cut(s)	10, 184
NsbI	TGCGCA	1 cut(s)	185
NspI	RCATGY	2 cut(s)	10, 184
PceI	AGGCCT	1 cut(s)	18
PciSI	GCTCTTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	63
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	68
SatI	GCNGC	1 cut(s)	54
SduI	GDGCHC	2 cut(s)	63, 197
SetI	ASST	6 cut(s)	55, 63, 84, 106, 152, 258
SmlI	CTYRAG	4 cut(s)	48, 68, 145, 200
SmoI	CTYRAG	4 cut(s)	48, 68, 145, 200
Sse9I	AATT	1 cut(s)	226
SseBI	AGGCCT	1 cut(s)	18
SstI	GAGCTC	1 cut(s)	63
StuI	AGGCCT	1 cut(s)	18
TasI	AATT	1 cut(s)	226
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	256
VneI	GTGCAC	1 cut(s)	193
XagI	CCTNNNNNAGG	1 cut(s)	108
XceI	RCATGY	2 cut(s)	10, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.