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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G76740 |
| fragaria_vesca | FvH4_2g13350 FvH4_2g13350 |
| malus_domestica | MD05G1029500.v1.1 |
| prunus_persica | Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 |
| pyrus_communis | pycom05g02080 |
| rosa_chinensis | RchiOBHm_Chr6g0274831 |
| rosa_laevigata | RLG00000013518 |
| rosa_multiflora | Rmu_sc0008611.1_g000008 |
| rosa_roxburghii | Rroxscaffold_7G00193900 |
| rosa_rugosa | Rorug06G0085100 |
| rosa_samantha | Rh6AG200700 Rh6BG204100 Rh6CG204400 Rh6DG195600 |
| rosa_wichuraiana | Rw6G017450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1811 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 2458, 3352 |
| AatII | GACGTC | 2 cut(s) | 317, 3374 |
| Acc36I | ACCTGC | 1 cut(s) | 6239 |
| AccB1I | GGYRCC | 2 cut(s) | 1511, 5506 |
| AccI | GTMKAC | 1 cut(s) | 4686 |
| AccII | CGCG | 2 cut(s) | 1717, 4600 |
| AccIII | TCCGGA | 2 cut(s) | 523, 3799 |
| AciI | CCGC | 6 cut(s) | 560, 1537, 4600, 4633, 5183, 5277 |
| AclI | AACGTT | 1 cut(s) | 233 |
| AcoI | YGGCCR | 2 cut(s) | 2287, 2377 |
| AcuI | CTGAAG | 8 cut(s) | 1022, 1881, 2135, 3011, 3588, 3915, 3945, 4803 |
| AcyI | GRCGYC | 2 cut(s) | 314, 3371 |
| AdeI | CACNNNGTG | 2 cut(s) | 3302, 5371 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 464, 1065, 1508, 3716, 4445, 4741, 5273, 5813 |
| AflII | CTTAAG | 1 cut(s) | 3917 |
| AflIII | ACRYGT | 2 cut(s) | 1587, 6009 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 6861 |
| AhlI | ACTAGT | 3 cut(s) | 2756, 2836, 3487 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1280, 1312, 2429, 2461, 6057, 6089 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 915, 947 |
| Alw21I | GWGCWC | 1 cut(s) | 4711 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1478, 1502 |
| Aor13HI | TCCGGA | 2 cut(s) | 523, 3799 |
| AseI | ATTAAT | 4 cut(s) | 1670, 3474, 4923, 5673 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 175, 933, 1174, 2604, 2724 |
| AspA2I | CCTAGG | 2 cut(s) | 6785, 6974 |
| AspLEI | GCGC | 1 cut(s) | 6841 |
| AsuC2I | CCSGG | 1 cut(s) | 2222 |
| AsuII | TTCGAA | 3 cut(s) | 4512, 4910, 5259 |
| AvaII | GGWCC | 6 cut(s) | 408, 1367, 4602, 5489, 5685, 6868 |
| AvrII | CCTAGG | 2 cut(s) | 6785, 6974 |
| AxyI | CCTNAGG | 3 cut(s) | 1061, 2541, 3435 |
| BaeGI | GKGCMC | 2 cut(s) | 418, 6535 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 2799, 2832, 3627, 3660, 6805, 6838 |
| BalI | TGGCCA | 2 cut(s) | 2289, 2379 |
| BanI | GGYRCC | 2 cut(s) | 1511, 5506 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1029, 1061 |
| BbsI | GAAGAC | 2 cut(s) | 1061, 3417 |
| Bbv12I | GWGCWC | 1 cut(s) | 4711 |
| BceAI | ACGGC | 1 cut(s) | 4562 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 5810, 5844 |
| BclI | TGATCA | 6 cut(s) | 2506, 2581, 4126, 4984, 6352, 6481 |
| BcnI | CCSGG | 1 cut(s) | 2222 |
| BcuI | ACTAGT | 3 cut(s) | 2756, 2836, 3487 |
| BfmI | CTRYAG | 9 cut(s) | 750, 1749, 1927, 2160, 2863, 5895, 6093, 6726, 6747 |
| BfrI | CTTAAG | 1 cut(s) | 3917 |
| BfuAI | ACCTGC | 1 cut(s) | 6239 |
| BglII | AGATCT | 3 cut(s) | 2127, 4330, 5143 |
| BlnI | CCTAGG | 2 cut(s) | 6785, 6974 |
| BlpI | GCTNAGC | 1 cut(s) | 3233 |
| BmcAI | AGTACT | 2 cut(s) | 2592, 3486 |
| Bme18I | GGWCC | 6 cut(s) | 408, 1367, 4602, 5489, 5685, 6868 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 6861 |
| BmiI | GGNNCC | 5 cut(s) | 1513, 3066, 4604, 5508, 6870 |
| BmrI | ACTGGG | 3 cut(s) | 1590, 2309, 3624 |
| BmuI | ACTGGG | 3 cut(s) | 1590, 2309, 3624 |
| BpiI | GAAGAC | 2 cut(s) | 1061, 3417 |
| BpmI | CTGGAG | 4 cut(s) | 900, 3362, 5469, 5823 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3233 |
| Bpu14I | TTCGAA | 3 cut(s) | 4512, 4910, 5259 |
| BpuEI | CTTGAG | 3 cut(s) | 95, 2630, 6312 |
| BpuMI | CCSGG | 1 cut(s) | 2222 |
| BsaAI | YACGTR | 2 cut(s) | 3137, 6536 |
| BsaBI | GATNNNNATC | 3 cut(s) | 282, 711, 3609 |
| BsaHI | GRCGYC | 2 cut(s) | 314, 3371 |
| BsaI | GGTCTC | 3 cut(s) | 855, 1828, 5436 |
| BsaWI | WCCGGW | 3 cut(s) | 523, 2398, 3799 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 518, 548, 6385, 6415 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 464, 1065, 1508, 3716, 4445, 4741, 5273, 5813 |
| Bse118I | RCCGGY | 3 cut(s) | 5009, 5509, 6979 |
| Bse21I | CCTNAGG | 3 cut(s) | 1061, 2541, 3435 |
| Bse8I | GATNNNNATC | 3 cut(s) | 282, 711, 3609 |
| BseAI | TCCGGA | 2 cut(s) | 523, 3799 |
| BseJI | GATNNNNATC | 3 cut(s) | 282, 711, 3609 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 464, 1065, 1508, 3716, 4445, 4741, 5273, 5813 |
| BseRI | GAGGAG | 4 cut(s) | 510, 994, 1021, 1078 |
| BseSI | GKGCMC | 2 cut(s) | 418, 6535 |
| BsgI | GTGCAG | 3 cut(s) | 2186, 2781, 4713 |
| Bsh1236I | CGCG | 2 cut(s) | 1717, 4600 |
| BshNI | GGYRCC | 2 cut(s) | 1511, 5506 |
| BsiHKAI | GWGCWC | 1 cut(s) | 4711 |
| BsiSI | CCGG | 7 cut(s) | 524, 2222, 2399, 3800, 5010, 5510, 6980 |
| BsiWI | CGTACG | 1 cut(s) | 5678 |
| BslFI | GGGAC | 9 cut(s) | 731, 936, 1103, 1598, 3101, 4588, 6227, 6723, 6854 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 464, 1065, 1508, 3716, 4445, 4741, 5273, 5813 |
| BsmFI | GGGAC | 9 cut(s) | 731, 936, 1103, 1598, 3101, 4588, 6227, 6723, 6854 |
| BsmI | GAATGC | 2 cut(s) | 1555, 5134 |
| Bso31I | GGTCTC | 3 cut(s) | 855, 1828, 5436 |
| Bsp119I | TTCGAA | 3 cut(s) | 4512, 4910, 5259 |
| Bsp1286I | GDGCHC | 3 cut(s) | 418, 4711, 6535 |
| Bsp13I | TCCGGA | 2 cut(s) | 523, 3799 |
| Bsp1407I | TGTACA | 1 cut(s) | 2947 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3233 |
| Bsp19I | CCATGG | 3 cut(s) | 318, 2094, 2970 |
| BspACI | CCGC | 6 cut(s) | 560, 1537, 4600, 4633, 5183, 5277 |
| BspEI | TCCGGA | 2 cut(s) | 523, 3799 |
| BspFNI | CGCG | 2 cut(s) | 1717, 4600 |
| BspHI | TCATGA | 3 cut(s) | 1417, 4459, 6484 |
| BspLI | GGNNCC | 5 cut(s) | 1513, 3066, 4604, 5508, 6870 |
| BspMAI | CTGCAG | 6 cut(s) | 1931, 2867, 5899, 6097, 6730, 6751 |
| BspMI | ACCTGC | 1 cut(s) | 6239 |
| BspT104I | TTCGAA | 3 cut(s) | 4512, 4910, 5259 |
| BspT107I | GGYRCC | 2 cut(s) | 1511, 5506 |
| BspTI | CTTAAG | 1 cut(s) | 3917 |
| BspTNI | GGTCTC | 3 cut(s) | 855, 1828, 5436 |
| BsrFI | RCCGGY | 3 cut(s) | 5009, 5509, 6979 |
| BsrGI | TGTACA | 1 cut(s) | 2947 |
| BssAI | RCCGGY | 3 cut(s) | 5009, 5509, 6979 |
| BssNI | GRCGYC | 2 cut(s) | 314, 3371 |
| BssT1I | CCWWGG | 9 cut(s) | 318, 668, 1283, 2094, 2970, 5910, 6785, 6842, 6974 |
| Bst6I | CTCTTC | 8 cut(s) | 14, 465, 998, 2015, 3585, 3935, 4509, 4793 |
| BstACI | GRCGYC | 2 cut(s) | 314, 3371 |
| BstAFI | CTTAAG | 1 cut(s) | 3917 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 6089 |
| BstAUI | TGTACA | 1 cut(s) | 2947 |
| BstBAI | YACGTR | 2 cut(s) | 3137, 6536 |
| BstBI | TTCGAA | 3 cut(s) | 4512, 4910, 5259 |
| BstC8I | GCNNGC | 7 cut(s) | 1955, 1976, 1997, 4107, 6612, 6645, 6981 |
| BstDSI | CCRYGG | 4 cut(s) | 318, 2094, 2970, 4578 |
| BstFNI | CGCG | 2 cut(s) | 1717, 4600 |
| BstHHI | GCGC | 1 cut(s) | 6841 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 103, 566, 1037, 6089, 6976 |
| BstNSI | RCATGY | 6 cut(s) | 569, 1107, 1591, 2241, 6013, 6293 |
| BstSFI | CTRYAG | 9 cut(s) | 750, 1749, 1927, 2160, 2863, 5895, 6093, 6726, 6747 |
| BstSLI | GKGCMC | 2 cut(s) | 418, 6535 |
| BstUI | CGCG | 2 cut(s) | 1717, 4600 |
| BstV2I | GAAGAC | 2 cut(s) | 1061, 3417 |
| BstX2I | RGATCY | 9 cut(s) | 658, 712, 1379, 2127, 4330, 4660, 5143, 5572, 6991 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1165, 2428, 3325, 5797 |
| BstYI | RGATCY | 9 cut(s) | 658, 712, 1379, 2127, 4330, 4660, 5143, 5572, 6991 |
| Bsu36I | CCTNAGG | 3 cut(s) | 1061, 2541, 3435 |
| BtgI | CCRYGG | 4 cut(s) | 318, 2094, 2970, 4578 |
| BtgZI | GCGATG | 2 cut(s) | 29, 5985 |
| BtsI | GCAGTG | 1 cut(s) | 6963 |
| BveI | ACCTGC | 1 cut(s) | 6239 |
| Cac8I | GCNNGC | 7 cut(s) | 1955, 1976, 1997, 4107, 6612, 6645, 6981 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1478, 1502 |
| CciI | TCATGA | 3 cut(s) | 1417, 4459, 6484 |
| CfoI | GCGC | 1 cut(s) | 6841 |
| Cfr10I | RCCGGY | 3 cut(s) | 5009, 5509, 6979 |
| CseI | GACGC | 2 cut(s) | 1395, 1764 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 4656, 4691, 5484, 5519 |
| DraI | TTTAAA | 1 cut(s) | 1689 |
| DraIII | CACNNNGTG | 2 cut(s) | 3302, 5371 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 2458, 3352 |
| DriI | GACNNNNNGTC | 1 cut(s) | 6861 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 2458, 3352 |
| EaeI | YGGCCR | 2 cut(s) | 2287, 2377 |
| Eam1104I | CTCTTC | 8 cut(s) | 14, 465, 998, 2015, 3585, 3935, 4509, 4793 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 6861 |
| EarI | CTCTTC | 8 cut(s) | 14, 465, 998, 2015, 3585, 3935, 4509, 4793 |
| EciI | GGCGGA | 1 cut(s) | 5292 |
| Eco130I | CCWWGG | 9 cut(s) | 318, 668, 1283, 2094, 2970, 5910, 6785, 6842, 6974 |
| Eco147I | AGGCCT | 4 cut(s) | 3746, 4475, 5303, 6460 |
| Eco31I | GGTCTC | 3 cut(s) | 855, 1828, 5436 |
| Eco32I | GATATC | 2 cut(s) | 3607, 5740 |
| Eco47I | GGWCC | 6 cut(s) | 408, 1367, 4602, 5489, 5685, 6868 |
| Eco57I | CTGAAG | 8 cut(s) | 1022, 1881, 2135, 3011, 3588, 3915, 3945, 4803 |
| Eco81I | CCTNAGG | 3 cut(s) | 1061, 2541, 3435 |
| EcoO109I | RGGNCCY | 3 cut(s) | 958, 5489, 5685 |
| EcoRI | GAATTC | 2 cut(s) | 57, 4033 |
| EcoRV | GATATC | 2 cut(s) | 3607, 5740 |
| EcoT14I | CCWWGG | 9 cut(s) | 318, 668, 1283, 2094, 2970, 5910, 6785, 6842, 6974 |
| EcoT22I | ATGCAT | 1 cut(s) | 5136 |
| ErhI | CCWWGG | 9 cut(s) | 318, 668, 1283, 2094, 2970, 5910, 6785, 6842, 6974 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 918, 950 |
| FaqI | GGGAC | 9 cut(s) | 731, 936, 1103, 1598, 3101, 4588, 6227, 6723, 6854 |
| FauNDI | CATATG | 1 cut(s) | 1651 |
| FbaI | TGATCA | 6 cut(s) | 2506, 2581, 4126, 4984, 6352, 6481 |
| FblI | GTMKAC | 1 cut(s) | 4686 |
| GlaI | GCGC | 1 cut(s) | 6840 |
| GsuI | CTGGAG | 4 cut(s) | 900, 3362, 5469, 5823 |
| HapII | CCGG | 7 cut(s) | 524, 2222, 2399, 3800, 5010, 5510, 6980 |
| HgaI | GACGC | 2 cut(s) | 1395, 1764 |
| HhaI | GCGC | 1 cut(s) | 6841 |
| Hin1I | GRCGYC | 2 cut(s) | 314, 3371 |
| Hin6I | GCGC | 1 cut(s) | 6839 |
| HinP1I | GCGC | 1 cut(s) | 6839 |
| HincII | GTYRAC | 2 cut(s) | 3293, 3861 |
| HindII | GTYRAC | 2 cut(s) | 3293, 3861 |
| HindIII | AAGCTT | 3 cut(s) | 95, 1173, 1893 |
| HpaII | CCGG | 7 cut(s) | 524, 2222, 2399, 3800, 5010, 5510, 6980 |
| Hpy166II | GTNNAC | 8 cut(s) | 47, 1196, 3293, 3861, 4585, 4687, 5413, 6661 |
| Hpy8I | GTNNAC | 8 cut(s) | 47, 1196, 3293, 3861, 4585, 4687, 5413, 6661 |
| Hpy99I | CGWCG | 1 cut(s) | 3848 |
| HpyCH4IV | ACGT | 8 cut(s) | 233, 314, 2477, 3136, 3371, 5125, 6132, 6535 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 103, 566, 1037, 6089, 6976 |
| HpySE526I | ACGT | 8 cut(s) | 233, 314, 2477, 3136, 3371, 5125, 6132, 6535 |
| Hsp92I | GRCGYC | 2 cut(s) | 314, 3371 |
| HspAI | GCGC | 1 cut(s) | 6839 |
| Kpn2I | TCCGGA | 2 cut(s) | 523, 3799 |
| KroI | GCCGGC | 1 cut(s) | 6979 |
| KroNI | GCCGGC | 1 cut(s) | 6981 |
| Ksp22I | TGATCA | 6 cut(s) | 2506, 2581, 4126, 4984, 6352, 6481 |
| LmnI | GCTCC | 2 cut(s) | 1140, 6139 |
| MaeII | ACGT | 8 cut(s) | 233, 314, 2477, 3136, 3371, 5125, 6132, 6535 |
| MfeI | CAATTG | 3 cut(s) | 2561, 3455, 6600 |
| MflI | RGATCY | 9 cut(s) | 658, 712, 1379, 2127, 4330, 4660, 5143, 5572, 6991 |
| MhlI | GDGCHC | 3 cut(s) | 418, 4711, 6535 |
| MlsI | TGGCCA | 2 cut(s) | 2289, 2379 |
| MluNI | TGGCCA | 2 cut(s) | 2289, 2379 |
| Mox20I | TGGCCA | 2 cut(s) | 2289, 2379 |
| Mph1103I | ATGCAT | 1 cut(s) | 5136 |
| MroI | TCCGGA | 2 cut(s) | 523, 3799 |
| MroNI | GCCGGC | 1 cut(s) | 6979 |
| MroXI | GAANNNNTTC | 5 cut(s) | 175, 933, 1174, 2604, 2724 |
| MscI | TGGCCA | 2 cut(s) | 2289, 2379 |
| MslI | CAYNNNNRTG | 6 cut(s) | 83, 3903, 3981, 4839, 5795, 5880 |
| Msp20I | TGGCCA | 2 cut(s) | 2289, 2379 |
| MspA1I | CMGCKG | 2 cut(s) | 1475, 5105 |
| MspCI | CTTAAG | 1 cut(s) | 3917 |
| MspI | CCGG | 7 cut(s) | 524, 2222, 2399, 3800, 5010, 5510, 6980 |
| MunI | CAATTG | 3 cut(s) | 2561, 3455, 6600 |
| Mva1269I | GAATGC | 2 cut(s) | 1555, 5134 |
| MvnI | CGCG | 2 cut(s) | 1717, 4600 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 103, 566, 1037, 6089, 6976 |
| NaeI | GCCGGC | 1 cut(s) | 6981 |
| NciI | CCSGG | 1 cut(s) | 2222 |
| NcoI | CCATGG | 3 cut(s) | 318, 2094, 2970 |
| NdeI | CATATG | 1 cut(s) | 1651 |
| NgoMIV | GCCGGC | 1 cut(s) | 6979 |
| NlaIV | GGNNCC | 5 cut(s) | 1513, 3066, 4604, 5508, 6870 |
| NmuCI | GTSAC | 9 cut(s) | 802, 1019, 2182, 2708, 3070, 3275, 3372, 5028, 5750 |
| NsiI | ATGCAT | 1 cut(s) | 5136 |
| NspI | RCATGY | 6 cut(s) | 569, 1107, 1591, 2241, 6013, 6293 |
| NspV | TTCGAA | 3 cut(s) | 4512, 4910, 5259 |
| PagI | TCATGA | 3 cut(s) | 1417, 4459, 6484 |
| PceI | AGGCCT | 4 cut(s) | 3746, 4475, 5303, 6460 |
| PciI | ACATGT | 2 cut(s) | 1587, 6009 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1714, 4518 |
| PctI | GAATGC | 2 cut(s) | 1555, 5134 |
| PdiI | GCCGGC | 1 cut(s) | 6981 |
| PdmI | GAANNNNTTC | 5 cut(s) | 175, 933, 1174, 2604, 2724 |
| Pfl23II | CGTACG | 1 cut(s) | 5678 |
| PfoI | TCCNGGA | 1 cut(s) | 2220 |
| Ppu21I | YACGTR | 2 cut(s) | 3137, 6536 |
| PpuMI | RGGWCCY | 2 cut(s) | 5489, 5685 |
| PscI | ACATGT | 2 cut(s) | 1587, 6009 |
| PshBI | ATTAAT | 4 cut(s) | 1670, 3474, 4923, 5673 |
| PsiI | TTATAA | 1 cut(s) | 1811 |
| Psp1406I | AACGTT | 1 cut(s) | 233 |
| Psp5II | RGGWCCY | 2 cut(s) | 5489, 5685 |
| PspLI | CGTACG | 1 cut(s) | 5678 |
| PspN4I | GGNNCC | 5 cut(s) | 1513, 3066, 4604, 5508, 6870 |
| PspPPI | RGGWCCY | 2 cut(s) | 5489, 5685 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2589, 2621 |
| PstI | CTGCAG | 6 cut(s) | 1931, 2867, 5899, 6097, 6730, 6751 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1478, 1502 |
| PsuI | RGATCY | 9 cut(s) | 658, 712, 1379, 2127, 4330, 4660, 5143, 5572, 6991 |
| PvuII | CAGCTG | 2 cut(s) | 1475, 5105 |
| RseI | CAYNNNNRTG | 6 cut(s) | 83, 3903, 3981, 4839, 5795, 5880 |
| ScaI | AGTACT | 2 cut(s) | 2592, 3486 |
| SduI | GDGCHC | 3 cut(s) | 418, 4711, 6535 |
| SfcI | CTRYAG | 9 cut(s) | 750, 1749, 1927, 2160, 2863, 5895, 6093, 6726, 6747 |
| SfuI | TTCGAA | 3 cut(s) | 4512, 4910, 5259 |
| SinI | GGWCC | 6 cut(s) | 408, 1367, 4602, 5489, 5685, 6868 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 83, 3903, 3981, 4839, 5795, 5880 |
| SmlI | CTYRAG | 4 cut(s) | 110, 2609, 3917, 6327 |
| SmoI | CTYRAG | 4 cut(s) | 110, 2609, 3917, 6327 |
| SpeI | ACTAGT | 3 cut(s) | 2756, 2836, 3487 |
| SseBI | AGGCCT | 4 cut(s) | 3746, 4475, 5303, 6460 |
| SsiI | CCGC | 6 cut(s) | 560, 1537, 4600, 4633, 5183, 5277 |
| SspI | AATATT | 5 cut(s) | 1885, 4078, 4456, 4867, 6518 |
| StuI | AGGCCT | 4 cut(s) | 3746, 4475, 5303, 6460 |
| StyI | CCWWGG | 9 cut(s) | 318, 668, 1283, 2094, 2970, 5910, 6785, 6842, 6974 |
| TaiI | ACGT | 8 cut(s) | 236, 317, 2480, 3139, 3374, 5128, 6135, 6538 |
| TaqI | TCGA | 9 cut(s) | 363, 487, 4512, 4521, 4910, 5259, 5820, 6021, 6649 |
| TatI | WGTACW | 4 cut(s) | 1865, 2590, 2947, 3484 |
| TauI | GCSGC | 1 cut(s) | 4636 |
| TseFI | GTSAC | 9 cut(s) | 802, 1019, 2182, 2708, 3070, 3275, 3372, 5028, 5750 |
| Tsp45I | GTSAC | 9 cut(s) | 802, 1019, 2182, 2708, 3070, 3275, 3372, 5028, 5750 |
| TspGWI | ACGGA | 5 cut(s) | 69, 266, 3150, 4432, 4853 |
| Vha464I | CTTAAG | 1 cut(s) | 3917 |
| VpaK11BI | GGWCC | 6 cut(s) | 408, 1367, 4602, 5489, 5685, 6868 |
| VspI | ATTAAT | 4 cut(s) | 1670, 3474, 4923, 5673 |
| XceI | RCATGY | 6 cut(s) | 569, 1107, 1591, 2241, 6013, 6293 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1735 |
| XmaJI | CCTAGG | 2 cut(s) | 6785, 6974 |
| XmiI | GTMKAC | 1 cut(s) | 4686 |
| XmnI | GAANNNNTTC | 5 cut(s) | 175, 933, 1174, 2604, 2724 |
| ZraI | GACGTC | 2 cut(s) | 315, 3372 |
| ZrmI | AGTACT | 2 cut(s) | 2592, 3486 |
| Zsp2I | ATGCAT | 1 cut(s) | 5136 |