Rh6DG195600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004572
Physical Location & Seq
Forward (+)
35019698 .. 35035621
15924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG195600.1

Sequence Viewer

Length: 1419 bp
ATGGTATCTTCAAAAAACAATAGTAACAGTACAGCAGGACCTCCAAGCAAGGCCAAGATTGTGCTTTCAATGTTTGCGTTTTTATGGTTTACAGGTTTCTCGATATTGGGTTTCGTGTATATGTCCCAAAAGTACAGTCCAAGACAAAGCGAAATCATCGTTCGTTTGCATTCTCTAACAGTAGAACATTTGTTTCATGTTCGAGGAGCTCCTCCATCTTTGGCAAAATGGGAAGCGAACATAACCATCCAAAACCACAACAACATCAACGACACCAGCAGAGACAGAGACATGAAAATCATCATACGAAACCTCCAAAGCGTTCTTTTTTACAAAGACCATGGCGTCTCGTGCACCTCGAATGAGAAACCGATGTTAGAGATCAAAAGCGAGAAACAAGGGATGGTGACTCTAAAATTCGAAACAAAGCATTGCGGACAAAAAAATCATGATCTTAATGAGGATTTTGACAATGAACTGGACAGAAAGATGAGGGAGGAAAGAACAAGAGGGCACTTGCGTATGAGTTTGAAGATGAACATGGTGGTGTCATCGGACTTTCTTCAATTGCCCAACTCTACAGGGAGATATTGGATAACCGACGTTTGGTGTTCACATAGTTTTGACGTTGTGTATGTGCATAGTTTAGGGAAGGGAAGAATGGTTGGTCATGATTTGGACTTATGGTATGATGAGAATAAGTGCAATCTGTCCAACTTCACTTCCTCAACTCTGCCGGCCCCTTCCTCTCTGGTCATAGGTCTCATGGAGATGGATTTCTATGCAATGAAGAGGAAGCAACTTCAAAGACTCTGCAAAAAGCATAGCATCCCTGCAAACATAGGGAACGCAGAAATGGCCAACAGGCTTACTTTGCTTCACAAGGTTCAGATACAGAAGGCGAAGAAGGTAAGCTTCAATCCTGAGAATGAAATATTTTTCTTTGTGGCTACACCCAAATATTCATACTCCAGTTTAAAGAAGAAACGGGTGCAAAAGAGGAAGTCCAGGGTGAAGCAAGCTTCAAAGAAGCAGGTTCAGCTTGCTGAAAATGGGAGAGAACTTGAACTCTCGGTGAGCATAATTGTTACCCCAGTTAGACATATAAGATCTCGTGCACAGAGAATGCAACAAGGTGATGCAGAAGCAATGTGTTTGCCTTTTTCTGCGCAGAAGAAAGTCAGAAGCATTGAGGAAAATGTAGGTGGTGATAAGCCGCCTCCGAAGGTTAAGTTGAGTGAGGGAGTTGGTGGTGATACAAAAGATTCTATTTCGAGTGGAGTATTAATTTATAAAAAACTGAGAAGCAGAATAGTGGTGTGTAAATATGGTGGAGATTCAATGGTTTCGAAGAAGAAAATTAATGCAGAGAGTGCTGTTGAAGCAATTGTGCCAAAAGGTGGAAGACTACTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

472

Amino Acids

53.58

Weight (kDa)

9.81

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1293
AasI GACNNNNNNGTC 1 cut(s) 344
Acc16I TGCGCA 1 cut(s) 1170
Acc36I ACCTGC 1 cut(s) 1024
AccB7I CCANNNNNTGG 1 cut(s) 1400
AciI CCGC 2 cut(s) 435, 1217
AcoI YGGCCR 1 cut(s) 858
AcsI RAATTY 1 cut(s) 416
AcyI GRCGYC 1 cut(s) 345
AfaI GTAC 2 cut(s) 31, 134
AfiI CCNNNNNNNGG 2 cut(s) 606, 1400
AjnI CCWGG 1 cut(s) 1007
AluBI AGCT 4 cut(s) 209, 915, 1022, 1042
AluI AGCT 4 cut(s) 209, 915, 1022, 1042
Alw21I GWGCWC 3 cut(s) 211, 356, 1120
Alw26I GTCTC 4 cut(s) 276, 282, 352, 767
Alw44I GTGCAC 2 cut(s) 352, 1116
AoxI GGCC 3 cut(s) 51, 738, 858
ApaLI GTGCAC 2 cut(s) 352, 1116
ApoI RAATTY 1 cut(s) 416
ArsI GACNNNNNNTTYG 3 cut(s) 121, 153, 1398
AseI ATTAAT 2 cut(s) 1286, 1362
AspLEI GCGC 1 cut(s) 1171
AspS9I GGNCC 2 cut(s) 38, 739
AsuHPI GGTGA 6 cut(s) 418, 1024, 1087, 1148, 1220, 1265
AsuII TTCGAA 2 cut(s) 420, 1349
AvaII GGWCC 1 cut(s) 38
BaeGI GKGCMC 3 cut(s) 356, 516, 1120
BalI TGGCCA 1 cut(s) 860
BanII GRGCYC 1 cut(s) 211
BauI CACGAG 2 cut(s) 349, 1113
BbsI GAAGAC 1 cut(s) 1411
Bbv12I GWGCWC 3 cut(s) 211, 356, 1120
BccI CCATC 4 cut(s) 223, 254, 397, 766
BciT130I CCWGG 1 cut(s) 1009
BcoDI GTCTC 4 cut(s) 276, 282, 352, 767
BfmI CTRYAG 1 cut(s) 579
BfuAI ACCTGC 1 cut(s) 1024
BglII AGATCT 1 cut(s) 1109
BisI GCNGC 1 cut(s) 1217
BlsI GCNGC 1 cut(s) 1218
Bme1390I CCNGG 1 cut(s) 1009
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 2 cut(s) 38, 739
BmiI GGNNCC 1 cut(s) 741
BmrFI CCNGG 1 cut(s) 1009
BmrI ACTGGG 1 cut(s) 1088
BmsI GCATC 2 cut(s) 837, 1129
BmuI ACTGGG 1 cut(s) 1088
BpiI GAAGAC 1 cut(s) 1411
BpmI CTGGAG 1 cut(s) 955
Bpu14I TTCGAA 2 cut(s) 420, 1349
BsaHI GRCGYC 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 767
BsaJI CCNNGG 2 cut(s) 340, 1008
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 2 cut(s) 606, 1400
Bse118I RCCGGY 1 cut(s) 736
Bse1I ACTGG 3 cut(s) 483, 972, 1094
Bse3DI GCAATG 3 cut(s) 430, 792, 1155
BseBI CCWGG 1 cut(s) 1009
BseDI CCNNGG 2 cut(s) 340, 1008
BseGI GGATG 3 cut(s) 246, 408, 828
BseLI CCNNNNNNNGG 2 cut(s) 606, 1400
BseMI GCAATG 3 cut(s) 430, 792, 1155
BseMII CTCAG 2 cut(s) 915, 1292
BseNI ACTGG 3 cut(s) 483, 972, 1094
BseRI GAGGAG 2 cut(s) 201, 219
BseSI GKGCMC 3 cut(s) 356, 516, 1120
BshFI GGCC 3 cut(s) 53, 740, 860
BsiHKAI GWGCWC 3 cut(s) 211, 356, 1120
BsiSI CCGG 1 cut(s) 737
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 2 cut(s) 606, 1400
BsmAI GTCTC 4 cut(s) 276, 282, 352, 767
BsmBI CGTCTC 1 cut(s) 352
BsmFI GGGAC 1 cut(s) 109
BsmI GAATGC 2 cut(s) 169, 1131
BsnI GGCC 3 cut(s) 53, 740, 860
Bso31I GGTCTC 1 cut(s) 767
Bsp119I TTCGAA 2 cut(s) 420, 1349
Bsp1286I GDGCHC 4 cut(s) 211, 356, 516, 1120
Bsp143I GATC 3 cut(s) 381, 451, 1109
Bsp19I CCATGG 1 cut(s) 340
BspACI CCGC 2 cut(s) 435, 1217
BspANI GGCC 3 cut(s) 53, 740, 860
BspCNI CTCAG 2 cut(s) 916, 1293
BspHI TCATGA 2 cut(s) 448, 670
BspLI GGNNCC 1 cut(s) 741
BspMI ACCTGC 1 cut(s) 1024
BspT104I TTCGAA 2 cut(s) 420, 1349
BspTNI GGTCTC 1 cut(s) 767
BsrDI GCAATG 3 cut(s) 430, 792, 1155
BsrFI RCCGGY 1 cut(s) 736
BsrI ACTGG 3 cut(s) 483, 972, 1094
BssAI RCCGGY 1 cut(s) 736
BssECI CCNNGG 2 cut(s) 340, 1008
BssMI GATC 3 cut(s) 381, 451, 1109
BssNI GRCGYC 1 cut(s) 345
BssSI CACGAG 2 cut(s) 349, 1113
BssT1I CCWWGG 1 cut(s) 340
Bst2BI CACGAG 2 cut(s) 349, 1113
Bst2UI CCWGG 1 cut(s) 1009
Bst4CI ACNGT 4 cut(s) 29, 137, 181, 1413
Bst6I CTCTTC 1 cut(s) 785
BstACI GRCGYC 1 cut(s) 345
BstAPI GCANNNNNTGC 1 cut(s) 1373
BstBI TTCGAA 2 cut(s) 420, 1349
BstC8I GCNNGC 3 cut(s) 738, 1020, 1044
BstDEI CTNAG 2 cut(s) 924, 1301
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 3 cut(s) 246, 408, 828
BstHHI GCGC 1 cut(s) 1171
BstKTI GATC 3 cut(s) 384, 454, 1112
BstMAI GTCTC 4 cut(s) 276, 282, 352, 767
BstMBI GATC 3 cut(s) 381, 451, 1109
BstMWI GCNNNNNNNGC 6 cut(s) 351, 857, 874, 1039, 1373, 1382
BstNI CCWGG 1 cut(s) 1009
BstSCI CCNGG 1 cut(s) 1007
BstSFI CTRYAG 1 cut(s) 579
BstSLI GKGCMC 3 cut(s) 356, 516, 1120
BstV2I GAAGAC 1 cut(s) 1411
BstX2I RGATCY 1 cut(s) 1109
BstYI RGATCY 1 cut(s) 1109
BsuRI GGCC 3 cut(s) 53, 740, 860
BtgI CCRYGG 1 cut(s) 340
BtsCI GGATG 3 cut(s) 246, 408, 828
BveI ACCTGC 1 cut(s) 1024
Cac8I GCNNGC 3 cut(s) 738, 1020, 1044
CciI TCATGA 2 cut(s) 448, 670
CfoI GCGC 1 cut(s) 1171
Cfr10I RCCGGY 1 cut(s) 736
Cfr13I GGNCC 2 cut(s) 38, 739
CseI GACGC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 30, 133
CviAII CATG 7 cut(s) 197, 292, 341, 449, 541, 671, 766
CviQI GTAC 2 cut(s) 30, 133
DdeI CTNAG 2 cut(s) 924, 1301
DpnI GATC 3 cut(s) 383, 453, 1111
DpnII GATC 3 cut(s) 381, 451, 1109
DraI TTTAAA 1 cut(s) 978
DrdI GACNNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 344
EaeI YGGCCR 1 cut(s) 858
Eam1104I CTCTTC 1 cut(s) 785
EarI CTCTTC 1 cut(s) 785
Ecl136II GAGCTC 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 211
Eco31I GGTCTC 1 cut(s) 767
Eco47I GGWCC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 209
EcoICRI GAGCTC 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 1007
EcoT14I CCWWGG 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 340
Esp3I CGTCTC 1 cut(s) 352
FaeI CATG 7 cut(s) 200, 295, 344, 452, 544, 674, 769
FalI AAGNNNNNCTT 2 cut(s) 899, 931
FaqI GGGAC 1 cut(s) 109
FatI CATG 7 cut(s) 196, 291, 340, 448, 540, 670, 765
Fnu4HI GCNGC 1 cut(s) 1217
FokI GGATG 3 cut(s) 233, 415, 815
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 1 cut(s) 1217
FspI TGCGCA 1 cut(s) 1170
GlaI GCGC 1 cut(s) 1170
GluI GCNGC 1 cut(s) 1217
GsuI CTGGAG 1 cut(s) 955
HaeIII GGCC 3 cut(s) 53, 740, 860
HapII CCGG 1 cut(s) 737
HgaI GACGC 1 cut(s) 334
HhaI GCGC 1 cut(s) 1171
Hin1I GRCGYC 1 cut(s) 345
Hin1II CATG 7 cut(s) 200, 295, 344, 452, 544, 674, 769
Hin6I GCGC 1 cut(s) 1169
HinP1I GCGC 1 cut(s) 1169
HindIII AAGCTT 2 cut(s) 913, 1020
HinfI GANTC 4 cut(s) 409, 810, 1265, 1337
HpaII CCGG 1 cut(s) 737
HphI GGTGA 6 cut(s) 418, 1024, 1087, 1148, 1220, 1265
Hpy166II GTNNAC 4 cut(s) 90, 354, 614, 1118
Hpy188I TCNGA 4 cut(s) 556, 891, 1184, 1224
Hpy188III TCNNGA 4 cut(s) 100, 449, 671, 923
Hpy8I GTNNAC 4 cut(s) 90, 354, 614, 1118
Hpy99I CGWCG 1 cut(s) 605
HpyAV CCTTC 5 cut(s) 646, 753, 892, 901, 1219
HpyCH4III ACNGT 4 cut(s) 29, 137, 181, 1413
HpyCH4IV ACGT 2 cut(s) 603, 627
HpyF10VI GCNNNNNNNGC 6 cut(s) 351, 857, 874, 1039, 1373, 1382
HpyF3I CTNAG 2 cut(s) 924, 1301
HpySE526I ACGT 2 cut(s) 603, 627
Hsp92I GRCGYC 1 cut(s) 345
Hsp92II CATG 7 cut(s) 200, 295, 344, 452, 544, 674, 769
HspAI GCGC 1 cut(s) 1169
KroI GCCGGC 1 cut(s) 736
KroNI GCCGGC 1 cut(s) 738
Kzo9I GATC 3 cut(s) 381, 451, 1109
LmnI GCTCC 2 cut(s) 206, 214
LweI GCATC 2 cut(s) 837, 1129
MaeII ACGT 2 cut(s) 603, 627
MaeIII GTNAC 3 cut(s) 23, 406, 1087
MalI GATC 3 cut(s) 383, 453, 1111
MboI GATC 3 cut(s) 381, 451, 1109
MfeI CAATTG 2 cut(s) 566, 1386
MflI RGATCY 1 cut(s) 1109
MhlI GDGCHC 4 cut(s) 211, 356, 516, 1120
MlsI TGGCCA 1 cut(s) 860
MluCI AATT 6 cut(s) 416, 566, 1083, 1287, 1359, 1386
MluNI TGGCCA 1 cut(s) 860
MlyI GAGTC 2 cut(s) 403, 804
MmeI TCCRAC 1 cut(s) 738
Mox20I TGGCCA 1 cut(s) 860
MroNI GCCGGC 1 cut(s) 736
MscI TGGCCA 1 cut(s) 860
MseI TTAA 5 cut(s) 456, 977, 1230, 1286, 1362
MslI CAYNNNNRTG 2 cut(s) 545, 770
Msp20I TGGCCA 1 cut(s) 860
MspI CCGG 1 cut(s) 737
MspR9I CCNGG 1 cut(s) 1009
MunI CAATTG 2 cut(s) 566, 1386
Mva1269I GAATGC 2 cut(s) 169, 1131
MvaI CCWGG 1 cut(s) 1009
MwoI GCNNNNNNNGC 6 cut(s) 351, 857, 874, 1039, 1373, 1382
NaeI GCCGGC 1 cut(s) 738
NcoI CCATGG 1 cut(s) 340
NdeII GATC 3 cut(s) 381, 451, 1109
NgoMIV GCCGGC 1 cut(s) 736
NlaIII CATG 7 cut(s) 200, 295, 344, 452, 544, 674, 769
NlaIV GGNNCC 1 cut(s) 741
NmuCI GTSAC 1 cut(s) 406
NsbI TGCGCA 1 cut(s) 1170
NspV TTCGAA 2 cut(s) 420, 1349
PagI TCATGA 2 cut(s) 448, 670
PcsI WCGNNNNNNNCGW 1 cut(s) 356
PctI GAATGC 2 cut(s) 169, 1131
PdiI GCCGGC 1 cut(s) 738
PfeI GAWTC 2 cut(s) 1265, 1337
PflMI CCANNNNNTGG 1 cut(s) 1400
PkrI GCNGC 1 cut(s) 1218
PleI GAGTC 2 cut(s) 403, 804
PpsI GAGTC 2 cut(s) 403, 804
PpuMI RGGWCCY 1 cut(s) 38
PshBI ATTAAT 2 cut(s) 1286, 1362
PsiI TTATAA 1 cut(s) 1293
Psp124BI GAGCTC 1 cut(s) 211
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 1007
PspGI CCWGG 1 cut(s) 1007
PspN4I GGNNCC 1 cut(s) 741
PspPI GGNCC 2 cut(s) 38, 739
PspPPI RGGWCCY 1 cut(s) 38
PsuI RGATCY 1 cut(s) 1109
RsaI GTAC 2 cut(s) 31, 134
RsaNI GTAC 2 cut(s) 30, 133
RseI CAYNNNNRTG 2 cut(s) 545, 770
SacI GAGCTC 1 cut(s) 211
SaqAI TTAA 5 cut(s) 456, 977, 1230, 1286, 1362
SatI GCNGC 1 cut(s) 1217
Sau3AI GATC 3 cut(s) 381, 451, 1109
Sau96I GGNCC 2 cut(s) 38, 739
SchI GAGTC 2 cut(s) 403, 804
ScrFI CCNGG 1 cut(s) 1009
SduI GDGCHC 4 cut(s) 211, 356, 516, 1120
SfaNI GCATC 2 cut(s) 837, 1129
SfcI CTRYAG 1 cut(s) 579
SfuI TTCGAA 2 cut(s) 420, 1349
SinI GGWCC 1 cut(s) 38
SmiMI CAYNNNNRTG 2 cut(s) 545, 770
Sse9I AATT 6 cut(s) 416, 566, 1083, 1287, 1359, 1386
SsiI CCGC 2 cut(s) 435, 1217
SspI AATATT 2 cut(s) 936, 962
SstI GAGCTC 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 1007
StyI CCWWGG 1 cut(s) 340
TaaI ACNGT 4 cut(s) 29, 137, 181, 1413
TaiI ACGT 2 cut(s) 606, 630
TaqI TCGA 6 cut(s) 101, 202, 359, 420, 1274, 1349
TasI AATT 6 cut(s) 416, 566, 1083, 1287, 1359, 1386
TatI WGTACW 2 cut(s) 29, 132
TauI GCSGC 1 cut(s) 1219
TfiI GAWTC 2 cut(s) 1265, 1337
Tru1I TTAA 5 cut(s) 456, 977, 1230, 1286, 1362
Tru9I TTAA 5 cut(s) 456, 977, 1230, 1286, 1362
TseFI GTSAC 1 cut(s) 406
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 7 cut(s) 185, 308, 489, 551, 803, 945, 954
Van91I CCANNNNNTGG 1 cut(s) 1400
VneI GTGCAC 2 cut(s) 352, 1116
VpaK11BI GGWCC 1 cut(s) 38
VspI ATTAAT 2 cut(s) 1286, 1362
XapI RAATTY 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.