Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004572

Physical Location & Seq

Genomic Coordinates Reverse (-)

35499432 .. 35509157

Gene Structure 9726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00193900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGATTTGTATGCAATGAAGAGGAAGCAACTTCAAAGACTCTGCAAAAAGCATAGCATCCCTGCAAACATAGGGAACACAGAAATGGCCAACAGGCTTACTTTGCTTCACAAGGTTCAGATACAGAAGGCGAAGAAAGTAAGCTTCAATCCTGAGAATGAAATATTTTTCTTTGTGGCTACGCCCAAATATTCATACTCCAGTTTAAAGAAGAAACGGGTGCAAAAGAGGAAGTCCAGGGTGAAGCAAGCTTCAAAGAAACAGGTTCAGCTTGCTGAAAATGGGAGAGAGCTTGAACTCTCGGTGAACATAATTGTTACCCCAGTTAGACATATAAGATCTCGTGCCCAGAGAATGCAACAAGGTGATGTAGAAGCAATGTGTTTGCCTTTTTCTGTGCAGAAGAAAGTCAGAAGCATTGAGGAAAATGTAGGTGGTGATAAGCTGCCTCCGGAGGTTAAGTTGAGTGAGGGAGTTGGTGGTGATAGAAATGATTCTATTTCGAGTGGAGCATTAATTTATAAAAAACTGAGAAGCAGAATGATGGTGTGTAAATATCGTGGAGATTCAATGGTTTCAAAGAAGAAAATTAATGCAGAGAGTGATGTTGAAGTAATTGTGCCAAAAGGTGGAAGACTACTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

24.46

Weight (kDa)

10.24

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76740
fragaria_vesca	FvH4_2g13350 FvH4_2g13350
malus_domestica	MD05G1029500.v1.1
prunus_persica	Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1
pyrus_communis	pycom05g02080
rosa_chinensis	RchiOBHm_Chr6g0274831
rosa_laevigata	RLG00000013518
rosa_multiflora	Rmu_sc0008611.1_g000008
rosa_roxburghii	Rroxscaffold_7G00193900
rosa_rugosa	Rorug06G0085100
rosa_samantha	Rh6AG200700 Rh6BG204100 Rh6CG204400 Rh6DG195600
rosa_wichuraiana	Rw6G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	522
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccIII	TCCGGA	1 cut(s)	451
AcoI	YGGCCR	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	629
AgsI	TTSAA	7 cut(s)	35, 148, 255, 296, 570, 579, 611
AjnI	CCWGG	1 cut(s)	236
AluBI	AGCT	5 cut(s)	144, 251, 271, 292, 445
AluI	AGCT	5 cut(s)	144, 251, 271, 292, 445
Aor13HI	TCCGGA	1 cut(s)	451
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	445
ArsI	GACNNNNNNTTYG	1 cut(s)	627
AseI	ATTAAT	2 cut(s)	515, 591
Asp700I	GAANNNNTTC	1 cut(s)	493
AsuHPI	GGTGA	5 cut(s)	253, 316, 377, 449, 494
BaeGI	GKGCMC	1 cut(s)	349
BalI	TGGCCA	1 cut(s)	89
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	640
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	1 cut(s)	538
BciT130I	CCWGG	1 cut(s)	238
BglII	AGATCT	1 cut(s)	338
BisI	GCNGC	1 cut(s)	446
BlsI	GCNGC	1 cut(s)	447
Bme1390I	CCNGG	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	238
BmrI	ACTGGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	66
BmuI	ACTGGG	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	640
BpmI	CTGGAG	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	629
Bse1I	ACTGG	2 cut(s)	201, 323
Bse3DI	GCAATG	2 cut(s)	21, 384
BseAI	TCCGGA	1 cut(s)	451
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	629
BseMI	GCAATG	2 cut(s)	21, 384
BseMII	CTCAG	2 cut(s)	144, 521
BseNI	ACTGG	2 cut(s)	201, 323
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	432
BsgI	GTGCAG	1 cut(s)	419
BshFI	GGCC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	452
BslI	CCNNNNNNNGG	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp13I	TCCGGA	1 cut(s)	451
Bsp143I	GATC	1 cut(s)	338
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	2 cut(s)	145, 522
BspEI	TCCGGA	1 cut(s)	451
BsrDI	GCAATG	2 cut(s)	21, 384
BsrI	ACTGG	2 cut(s)	201, 323
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	338
BssSI	CACGAG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	642
Bst6I	CTCTTC	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	249, 273
BstDEI	CTNAG	2 cut(s)	153, 530
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	341
BstMBI	GATC	1 cut(s)	338
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	236
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	432
BstV2I	GAAGAC	1 cut(s)	640
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	249, 273
CviJI	RGCY	8 cut(s)	89, 97, 144, 179, 251, 271, 292, 445
CviKI_1	RGCY	8 cut(s)	89, 97, 144, 179, 251, 271, 292, 445
DdeI	CTNAG	2 cut(s)	153, 530
DpnI	GATC	1 cut(s)	340
DpnII	GATC	1 cut(s)	338
DraI	TTTAAA	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	236
FaiI	YATR	8 cut(s)	12, 54, 71, 196, 311, 333, 335, 522
Fnu4HI	GCNGC	1 cut(s)	446
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	446
GluI	GCNGC	1 cut(s)	446
GsuI	CTGGAG	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	452
HindIII	AAGCTT	2 cut(s)	142, 249
HinfI	GANTC	3 cut(s)	39, 494, 566
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	5 cut(s)	253, 316, 377, 449, 494
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	120, 413
Hpy188III	TCNNGA	2 cut(s)	152, 452
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	642
HpyCH4V	TGCA	7 cut(s)	14, 45, 65, 223, 358, 400, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	2 cut(s)	153, 530
Kpn2I	TCCGGA	1 cut(s)	451
Kzo9I	GATC	1 cut(s)	338
LmnI	GCTCC	1 cut(s)	509
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	1 cut(s)	340
MboI	GATC	1 cut(s)	338
MboII	GAAGA	6 cut(s)	31, 145, 223, 415, 595, 645
MflI	RGATCY	1 cut(s)	338
MhlI	GDGCHC	1 cut(s)	349
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	4 cut(s)	312, 516, 588, 615
MluNI	TGGCCA	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	33
MnlI	CCTC	6 cut(s)	15, 222, 415, 448, 459, 463
Mox20I	TGGCCA	1 cut(s)	89
MroI	TCCGGA	1 cut(s)	451
MroXI	GAANNNNTTC	1 cut(s)	493
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	4 cut(s)	206, 459, 515, 591
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	89
MspI	CCGG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	238
Mva1269I	GAATGC	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	103
NdeII	GATC	1 cut(s)	338
PctI	GAATGC	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	493
PfeI	GAWTC	2 cut(s)	494, 566
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	1 cut(s)	447
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PshBI	ATTAAT	2 cut(s)	515, 591
PsiI	TTATAA	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	338
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	4 cut(s)	206, 459, 515, 591
SatI	GCNGC	1 cut(s)	446
Sau3AI	GATC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	349
SfaNI	GCATC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	83
Sse9I	AATT	4 cut(s)	312, 516, 588, 615
SspI	AATATT	2 cut(s)	165, 191
StyD4I	CCNGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	642
TaqI	TCGA	1 cut(s)	503
TasI	AATT	4 cut(s)	312, 516, 588, 615
TfiI	GAWTC	2 cut(s)	494, 566
Tru1I	TTAA	4 cut(s)	206, 459, 515, 591
Tru9I	TTAA	4 cut(s)	206, 459, 515, 591
TseI	GCWGC	1 cut(s)	445
TspDTI	ATGAA	3 cut(s)	32, 174, 183
Van91I	CCANNNNNTGG	1 cut(s)	629
VspI	ATTAAT	2 cut(s)	515, 591
XmnI	GAANNNNTTC	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.