Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008611.1

Orthogroup ID

OG0004572

Physical Location & Seq

Genomic Coordinates Forward (+)

28613 .. 29281

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008611.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atggccaacaggcttactttgcttcacaaggttcagatacagaaggcgaagaaggtaagcttcaatcctgagaatgaaatatttttctttgtggctacgcccaaatattcatactccagtttaaagaagaaacgggtgcaaaagaggaagtccagggtgaagcaagcttcaaagaagcaggttcagctggctgaaaatgggagagaaattgaactctcggtgagcataattgttaccccagttagacatataagatctcgtgcacagagaatgcaacaaggtgatgcagaagcaatgtgtttgcctttttctgcgcagaagaaagtcagaagcattgaggaaaatgtaggtggtcataagccgcctccgaaggttaaattgagtgagggagttggtggtgatacaaaagattctatttcgagtggagtattaatttataaaaaactgagaagcagaatggtggtgcgtaaatatggtggagattcaatggtttcgaagaagaaaattaatgcagagagtgctgttgaagcaattgtgccaaaaggtggaagactactgttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

20.95

Weight (kDa)

10.49

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76740
fragaria_vesca	FvH4_2g13350 FvH4_2g13350
malus_domestica	MD05G1029500.v1.1
prunus_persica	Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1
pyrus_communis	pycom05g02080
rosa_chinensis	RchiOBHm_Chr6g0274831
rosa_laevigata	RLG00000013518
rosa_multiflora	Rmu_sc0008611.1_g000008
rosa_roxburghii	Rroxscaffold_7G00193900
rosa_rugosa	Rorug06G0085100
rosa_samantha	Rh6AG200700 Rh6BG204100 Rh6CG204400 Rh6DG195600
rosa_wichuraiana	Rw6G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
Acc16I	TGCGCA	1 cut(s)	315
Acc36I	ACCTGC	1 cut(s)	169
AccB7I	CCANNNNNTGG	1 cut(s)	545
AciI	CCGC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	1 cut(s)	545
AgsI	TTSAA	5 cut(s)	64, 171, 212, 486, 527
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	3 cut(s)	60, 167, 187
AluI	AGCT	3 cut(s)	60, 167, 187
Alw21I	GWGCWC	1 cut(s)	265
Alw44I	GTGCAC	1 cut(s)	261
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	261
ArsI	GACNNNNNNTTYG	1 cut(s)	543
AseI	ATTAAT	2 cut(s)	431, 507
AspLEI	GCGC	1 cut(s)	316
AsuHPI	GGTGA	4 cut(s)	169, 232, 293, 410
AsuII	TTCGAA	1 cut(s)	494
BaeGI	GKGCMC	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	556
Bbv12I	GWGCWC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	154
BfuAI	ACCTGC	1 cut(s)	169
BglII	AGATCT	1 cut(s)	254
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	154
BmrI	ACTGGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	274
BmuI	ACTGGG	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	556
BpmI	CTGGAG	1 cut(s)	100
Bpu14I	TTCGAA	1 cut(s)	494
BsaJI	CCNNGG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	545
Bse1I	ACTGG	2 cut(s)	117, 239
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	545
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	2 cut(s)	60, 437
BseNI	ACTGG	2 cut(s)	117, 239
BseSI	GKGCMC	1 cut(s)	265
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	545
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	254
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	61, 438
BspMI	ACCTGC	1 cut(s)	169
BspT104I	TTCGAA	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	300
BsrI	ACTGG	2 cut(s)	117, 239
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	1 cut(s)	254
BssSI	CACGAG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	558
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstBI	TTCGAA	1 cut(s)	494
BstC8I	GCNNGC	2 cut(s)	165, 189
BstDEI	CTNAG	2 cut(s)	69, 446
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	1 cut(s)	257
BstMBI	GATC	1 cut(s)	254
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 184, 518, 527
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	152
BstSLI	GKGCMC	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	556
BstX2I	RGATCY	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	5
BveI	ACCTGC	1 cut(s)	169
Cac8I	GCNNGC	2 cut(s)	165, 189
CfoI	GCGC	1 cut(s)	316
CviJI	RGCY	8 cut(s)	5, 13, 60, 95, 167, 187, 191, 361
CviKI_1	RGCY	8 cut(s)	5, 13, 60, 95, 167, 187, 191, 361
DdeI	CTNAG	2 cut(s)	69, 446
DpnI	GATC	1 cut(s)	256
DpnII	GATC	1 cut(s)	254
DraI	TTTAAA	1 cut(s)	123
EaeI	YGGCCR	1 cut(s)	3
EcoRII	CCWGG	1 cut(s)	152
FaiI	YATR	7 cut(s)	112, 227, 249, 251, 357, 438, 474
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
Fnu4HI	GCNGC	1 cut(s)	362
Fsp4HI	GCNGC	1 cut(s)	362
FspI	TGCGCA	1 cut(s)	315
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	1 cut(s)	362
GsuI	CTGGAG	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	316
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HindIII	AAGCTT	2 cut(s)	58, 165
HinfI	GANTC	2 cut(s)	410, 482
HphI	GGTGA	4 cut(s)	169, 232, 293, 410
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	3 cut(s)	36, 329, 369
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	263
HpyAV	CCTTC	3 cut(s)	37, 46, 364
HpyCH4III	ACNGT	1 cut(s)	558
HpyCH4V	TGCA	5 cut(s)	139, 263, 274, 287, 512
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 184, 518, 527
HpyF3I	CTNAG	2 cut(s)	69, 446
HspAI	GCGC	1 cut(s)	314
Kzo9I	GATC	1 cut(s)	254
LpnPI	CCDG	7 cut(s)	81, 130, 139, 164, 166, 173, 252
LweI	GCATC	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	1 cut(s)	256
MboI	GATC	1 cut(s)	254
MboII	GAAGA	6 cut(s)	61, 139, 331, 508, 511, 561
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	254
MhlI	GDGCHC	1 cut(s)	265
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	207, 228, 377, 432, 504, 531
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	138, 331, 375, 379
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	122, 375, 431, 507
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	187
MspR9I	CCNGG	1 cut(s)	154
MunI	CAATTG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	4 cut(s)	19, 184, 518, 527
NdeII	GATC	1 cut(s)	254
NsbI	TGCGCA	1 cut(s)	315
NspV	TTCGAA	1 cut(s)	494
PctI	GAATGC	1 cut(s)	276
PfeI	GAWTC	2 cut(s)	410, 482
PflMI	CCANNNNNTGG	1 cut(s)	545
PkrI	GCNGC	1 cut(s)	363
PshBI	ATTAAT	2 cut(s)	431, 507
PsiI	TTATAA	1 cut(s)	438
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	254
PvuII	CAGCTG	1 cut(s)	187
SaqAI	TTAA	4 cut(s)	122, 375, 431, 507
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	265
SfaNI	GCATC	1 cut(s)	274
SfuI	TTCGAA	1 cut(s)	494
Sse9I	AATT	6 cut(s)	207, 228, 377, 432, 504, 531
SsiI	CCGC	1 cut(s)	362
SspI	AATATT	2 cut(s)	81, 107
StyD4I	CCNGG	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	558
TaqI	TCGA	2 cut(s)	419, 494
TasI	AATT	6 cut(s)	207, 228, 377, 432, 504, 531
TauI	GCSGC	1 cut(s)	364
TfiI	GAWTC	2 cut(s)	410, 482
Tru1I	TTAA	4 cut(s)	122, 375, 431, 507
Tru9I	TTAA	4 cut(s)	122, 375, 431, 507
TspDTI	ATGAA	2 cut(s)	90, 99
Van91I	CCANNNNNTGG	1 cut(s)	545
VneI	GTGCAC	1 cut(s)	261
VspI	ATTAAT	2 cut(s)	431, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.