Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004572

Physical Location & Seq

Genomic Coordinates Forward (+)

34118790 .. 34120548

Gene Structure 1759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG204400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAAGACTTTATATACCCCCTCCTCACTCTCCTCTCACTGTCTGTCCAACTTCACTTCCTTAACTCTGCCGGCCCCTTCCTCTCTGGTCATAGGTCTCATGGAGATGGATTTCTATGCAATGAAGAGGAAGCAACTTCAAAGACTCTGCAAAAAGCATAGCATCCCTGCAAACATAGGGAACACAGAAATGGCCAACAGGCTTACTTTGCTTCACAAGGTTCAGATACAGAAGGCGAAGAAGGTAAGCTTCAATCCTGAGAATGAAATATTTTTCTTTGTGGCTACGCCCAAATATTCATACTCCAGTTTAGAGAAGAAACGGGTGCAAAAGAGGAAGTCCAGGGTGAAGCAAGCTTCAAAGAAGCAGGTTCAGCTTGCTGAAAATGGGAGAGAACTTGAACTCTCGGTGAGCATAATTGTTACCCCAGTTAGACATATAAGATCTCGTGCACAGAGAATGCAACAAGGTGATGCAGAAGCAATGTGTTTGCCTTTTTCTGCGCAGAAGAAAGTCAGAAGCATTGAGGAAAATGTATGTGGTGATAAGCCGCCTCCGAAGGTTAAATTGAGTGAGGGAGTTGGTGGTGATACAAAAGATTCTATTTCGAGTGGAGTATTCATTTATAAAAAACTGAGAAGCAGAATGGTGGTGTGTAAATATGGTGGAGATTCAATGGTTTCGAAGAAGAAAATTAATGCAGAGAGTGCTGTTGAAGCAATTGTGCCAAAAGGTAGAAGACTACTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

28.07

Weight (kDa)

10.1

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76740
fragaria_vesca	FvH4_2g13350 FvH4_2g13350
malus_domestica	MD05G1029500.v1.1
prunus_persica	Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1
pyrus_communis	pycom05g02080
rosa_chinensis	RchiOBHm_Chr6g0274831
rosa_laevigata	RLG00000013518
rosa_multiflora	Rmu_sc0008611.1_g000008
rosa_roxburghii	Rroxscaffold_7G00193900
rosa_rugosa	Rorug06G0085100
rosa_samantha	Rh6AG200700 Rh6BG204100 Rh6CG204400 Rh6DG195600
rosa_wichuraiana	Rw6G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
Acc16I	TGCGCA	1 cut(s)	504
Acc36I	ACCTGC	1 cut(s)	358
AciI	CCGC	1 cut(s)	551
AcoI	YGGCCR	1 cut(s)	192
AgsI	TTSAA	6 cut(s)	140, 253, 360, 401, 675, 716
AjnI	CCWGG	1 cut(s)	341
AluBI	AGCT	3 cut(s)	249, 356, 376
AluI	AGCT	3 cut(s)	249, 356, 376
Alw21I	GWGCWC	1 cut(s)	454
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	450
AoxI	GGCC	2 cut(s)	72, 192
ApaLI	GTGCAC	1 cut(s)	450
ArsI	GACNNNNNNTTYG	1 cut(s)	732
AseI	ATTAAT	1 cut(s)	696
AspLEI	GCGC	1 cut(s)	505
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	5 cut(s)	358, 421, 482, 554, 599
AsuII	TTCGAA	1 cut(s)	683
BaeGI	GKGCMC	1 cut(s)	454
BalI	TGGCCA	1 cut(s)	194
BauI	CACGAG	1 cut(s)	447
BbsI	GAAGAC	2 cut(s)	11, 745
Bbv12I	GWGCWC	1 cut(s)	454
BccI	CCATC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	358
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	1 cut(s)	551
BlsI	GCNGC	1 cut(s)	552
Bme1390I	CCNGG	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	343
BmrI	ACTGGG	1 cut(s)	422
BmsI	GCATC	2 cut(s)	171, 463
BmuI	ACTGGG	1 cut(s)	422
BpiI	GAAGAC	2 cut(s)	11, 745
BpmI	CTGGAG	1 cut(s)	289
Bpu14I	TTCGAA	1 cut(s)	683
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	342
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	306, 428
Bse3DI	GCAATG	2 cut(s)	126, 489
BseBI	CCWGG	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	162
BseMI	GCAATG	2 cut(s)	126, 489
BseMII	CTCAG	2 cut(s)	249, 626
BseNI	ACTGG	2 cut(s)	306, 428
BseRI	GAGGAG	2 cut(s)	13, 22
BseSI	GKGCMC	1 cut(s)	454
BshFI	GGCC	2 cut(s)	74, 194
BsiHKAI	GWGCWC	1 cut(s)	454
BsiSI	CCGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	2 cut(s)	74, 194
Bso31I	GGTCTC	1 cut(s)	101
Bsp119I	TTCGAA	1 cut(s)	683
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	1 cut(s)	443
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	2 cut(s)	74, 194
BspCNI	CTCAG	2 cut(s)	250, 627
BspLI	GGNNCC	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	358
BspT104I	TTCGAA	1 cut(s)	683
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	2 cut(s)	126, 489
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	306, 428
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	443
BssSI	CACGAG	1 cut(s)	447
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	343
Bst4CI	ACNGT	2 cut(s)	41, 747
Bst6I	CTCTTC	1 cut(s)	119
BstAPI	GCANNNNNTGC	1 cut(s)	707
BstBI	TTCGAA	1 cut(s)	683
BstC8I	GCNNGC	3 cut(s)	72, 354, 378
BstDEI	CTNAG	2 cut(s)	258, 635
BstF5I	GGATG	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	1 cut(s)	446
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	443
BstMWI	GCNNNNNNNGC	4 cut(s)	208, 373, 707, 716
BstNI	CCWGG	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	341
BstSLI	GKGCMC	1 cut(s)	454
BstV2I	GAAGAC	2 cut(s)	11, 745
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BsuRI	GGCC	2 cut(s)	74, 194
BtsCI	GGATG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	37
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	3 cut(s)	72, 354, 378
CfoI	GCGC	1 cut(s)	505
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	73
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	8 cut(s)	74, 194, 202, 249, 284, 356, 376, 550
CviKI_1	RGCY	8 cut(s)	74, 194, 202, 249, 284, 356, 376, 550
DdeI	CTNAG	2 cut(s)	258, 635
DpnI	GATC	1 cut(s)	445
DpnII	GATC	1 cut(s)	443
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	341
FaeI	CATG	1 cut(s)	103
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FatI	CATG	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	551
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	551
FspI	TGCGCA	1 cut(s)	504
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	1 cut(s)	551
GsuI	CTGGAG	1 cut(s)	289
HaeIII	GGCC	2 cut(s)	74, 194
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	1 cut(s)	505
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HindIII	AAGCTT	2 cut(s)	247, 354
HinfI	GANTC	3 cut(s)	144, 599, 671
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	5 cut(s)	358, 421, 482, 554, 599
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	3 cut(s)	225, 518, 558
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	1 cut(s)	452
HpyAV	CCTTC	4 cut(s)	87, 226, 235, 553
HpyCH4III	ACNGT	2 cut(s)	41, 747
HpyCH4V	TGCA	8 cut(s)	119, 150, 170, 328, 452, 463, 476, 701
HpyF10VI	GCNNNNNNNGC	4 cut(s)	208, 373, 707, 716
HpyF3I	CTNAG	2 cut(s)	258, 635
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	1 cut(s)	503
KroI	GCCGGC	1 cut(s)	70
KroNI	GCCGGC	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	443
LweI	GCATC	2 cut(s)	171, 463
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	1 cut(s)	445
MboI	GATC	1 cut(s)	443
MboII	GAAGA	8 cut(s)	16, 136, 250, 328, 520, 697, 700, 750
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	1 cut(s)	443
MhlI	GDGCHC	1 cut(s)	454
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	4 cut(s)	417, 566, 693, 720
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	9 cut(s)	31, 34, 43, 91, 120, 327, 520, 564, 568
Mox20I	TGGCCA	1 cut(s)	194
MroNI	GCCGGC	1 cut(s)	70
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	3 cut(s)	62, 564, 696
MslI	CAYNNNNRTG	2 cut(s)	104, 188
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	343
MunI	CAATTG	1 cut(s)	720
Mva1269I	GAATGC	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	4 cut(s)	208, 373, 707, 716
NaeI	GCCGGC	1 cut(s)	72
NdeII	GATC	1 cut(s)	443
NgoMIV	GCCGGC	1 cut(s)	70
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	75
NsbI	TGCGCA	1 cut(s)	504
NspV	TTCGAA	1 cut(s)	683
PctI	GAATGC	1 cut(s)	465
PdiI	GCCGGC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	599, 671
PkrI	GCNGC	1 cut(s)	552
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PshBI	ATTAAT	1 cut(s)	696
PsiI	TTATAA	1 cut(s)	627
Psp6I	CCWGG	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	443
RseI	CAYNNNNRTG	2 cut(s)	104, 188
SaqAI	TTAA	3 cut(s)	62, 564, 696
SatI	GCNGC	1 cut(s)	551
Sau3AI	GATC	1 cut(s)	443
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	343
SduI	GDGCHC	1 cut(s)	454
SfaNI	GCATC	2 cut(s)	171, 463
SfuI	TTCGAA	1 cut(s)	683
SmiMI	CAYNNNNRTG	2 cut(s)	104, 188
Sse9I	AATT	4 cut(s)	417, 566, 693, 720
SsiI	CCGC	1 cut(s)	551
SspI	AATATT	2 cut(s)	270, 296
StyD4I	CCNGG	1 cut(s)	341
TaaI	ACNGT	2 cut(s)	41, 747
TaqI	TCGA	2 cut(s)	608, 683
TasI	AATT	4 cut(s)	417, 566, 693, 720
TauI	GCSGC	1 cut(s)	553
TfiI	GAWTC	2 cut(s)	599, 671
Tru1I	TTAA	3 cut(s)	62, 564, 696
Tru9I	TTAA	3 cut(s)	62, 564, 696
TscAI	CASTG	1 cut(s)	44
TspDTI	ATGAA	5 cut(s)	17, 137, 279, 288, 610
TspRI	CASTG	1 cut(s)	44
VneI	GTGCAC	1 cut(s)	450
VspI	ATTAAT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.