Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004572

Physical Location & Seq

Genomic Coordinates Forward (+)

34600998 .. 34601750

Gene Structure 753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G017450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGATTTCTATGCAATGAAGAGGAAGCAACTTCAAAGACTCTGCAAAAAGCATAGCATCCCTGCAAACATAGGGAACACAGAAATGGCCAACAGGCTTACTTTGCTTCACAAGGTTCAGATACAGAAGGCGAAGAAGGTAAGCTTCAATCCTGAGAATGAAATATTTTTCTTTGTGGCTACGCCCAAATATTCATACTCCAGTTTAAAGAAGAAACGGGTGCAAAAGAGGAAGTCCAGGGTGAAGCAAGCTTCAAAGAAGCAGGTTCAGCTGGCTGAAAATGGGAGAGAAATTGAACTCTCGGTGAGCATAATTGTTACCCCAGTTAGACATATAAGATCTCGTGCACAGAGAATGCAACAAGGTGATGCAGAAGCAATGTGTTTGCCTTTTTCTGCGCAGAAGAAAGTCAGAAGCATTGAGGAAAATGTAGGTGGTCATAAGCCTCCTCCGAACGTTAAATTGAGTGAGGGAGTTGGTGGTGATACAAAAGATTCTATTTCGAGTGGAGTATTAATTTATAAAAAACTGAGAAGCAGAATGGTGGTGTGTAAATATGGTGGAGATTCAATGGTTTCGAAGAAGAAAATTAATGCAGAGAGTGCTGTTGAAGCAATTGTGCCAAAAGGTGGAAGACTACTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

24.19

Weight (kDa)

10.31

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76740
fragaria_vesca	FvH4_2g13350 FvH4_2g13350
malus_domestica	MD05G1029500.v1.1
prunus_persica	Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1 Prupe.8G035200_v2.0.a1
pyrus_communis	pycom05g02080
rosa_chinensis	RchiOBHm_Chr6g0274831
rosa_laevigata	RLG00000013518
rosa_multiflora	Rmu_sc0008611.1_g000008
rosa_roxburghii	Rroxscaffold_7G00193900
rosa_rugosa	Rorug06G0085100
rosa_samantha	Rh6AG200700 Rh6BG204100 Rh6CG204400 Rh6DG195600
rosa_wichuraiana	Rw6G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	522
Acc16I	TGCGCA	1 cut(s)	399
Acc36I	ACCTGC	1 cut(s)	253
AccB7I	CCANNNNNTGG	1 cut(s)	629
AclI	AACGTT	1 cut(s)	456
AcoI	YGGCCR	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	629
AgsI	TTSAA	6 cut(s)	35, 148, 255, 296, 570, 611
AjnI	CCWGG	1 cut(s)	236
AluBI	AGCT	3 cut(s)	144, 251, 271
AluI	AGCT	3 cut(s)	144, 251, 271
Alw21I	GWGCWC	1 cut(s)	349
Alw44I	GTGCAC	1 cut(s)	345
AoxI	GGCC	1 cut(s)	87
ApaLI	GTGCAC	1 cut(s)	345
ArsI	GACNNNNNNTTYG	1 cut(s)	627
AseI	ATTAAT	2 cut(s)	515, 591
AspLEI	GCGC	1 cut(s)	400
AsuHPI	GGTGA	4 cut(s)	253, 316, 377, 494
AsuII	TTCGAA	1 cut(s)	578
BaeGI	GKGCMC	1 cut(s)	349
BalI	TGGCCA	1 cut(s)	89
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	640
Bbv12I	GWGCWC	1 cut(s)	349
BciT130I	CCWGG	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	253
BglII	AGATCT	1 cut(s)	338
Bme1390I	CCNGG	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	238
BmrI	ACTGGG	1 cut(s)	317
BmsI	GCATC	2 cut(s)	66, 358
BmuI	ACTGGG	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	640
BpmI	CTGGAG	1 cut(s)	184
Bpu14I	TTCGAA	1 cut(s)	578
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	629
Bse1I	ACTGG	2 cut(s)	201, 323
Bse3DI	GCAATG	2 cut(s)	21, 384
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	629
BseMI	GCAATG	2 cut(s)	21, 384
BseMII	CTCAG	2 cut(s)	144, 521
BseNI	ACTGG	2 cut(s)	201, 323
BseRI	GAGGAG	1 cut(s)	438
BseSI	GKGCMC	1 cut(s)	349
BshFI	GGCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	1 cut(s)	89
Bsp119I	TTCGAA	1 cut(s)	578
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	338
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	2 cut(s)	145, 522
BspMI	ACCTGC	1 cut(s)	253
BspT104I	TTCGAA	1 cut(s)	578
BsrDI	GCAATG	2 cut(s)	21, 384
BsrI	ACTGG	2 cut(s)	201, 323
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	338
BssSI	CACGAG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	642
Bst6I	CTCTTC	1 cut(s)	14
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstBI	TTCGAA	1 cut(s)	578
BstC8I	GCNNGC	2 cut(s)	249, 273
BstDEI	CTNAG	2 cut(s)	153, 530
BstF5I	GGATG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	1 cut(s)	341
BstMBI	GATC	1 cut(s)	338
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 268, 602, 611
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	236
BstSLI	GKGCMC	1 cut(s)	349
BstV2I	GAAGAC	1 cut(s)	640
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	57
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	2 cut(s)	249, 273
CfoI	GCGC	1 cut(s)	400
CviJI	RGCY	8 cut(s)	89, 97, 144, 179, 251, 271, 275, 445
CviKI_1	RGCY	8 cut(s)	89, 97, 144, 179, 251, 271, 275, 445
DdeI	CTNAG	2 cut(s)	153, 530
DpnI	GATC	1 cut(s)	340
DpnII	GATC	1 cut(s)	338
DraI	TTTAAA	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	236
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FokI	GGATG	1 cut(s)	44
FspI	TGCGCA	1 cut(s)	399
GlaI	GCGC	1 cut(s)	399
GsuI	CTGGAG	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	89
HhaI	GCGC	1 cut(s)	400
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HindIII	AAGCTT	2 cut(s)	142, 249
HinfI	GANTC	3 cut(s)	39, 494, 566
HphI	GGTGA	4 cut(s)	253, 316, 377, 494
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	3 cut(s)	120, 413, 453
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	2 cut(s)	121, 130
HpyCH4III	ACNGT	1 cut(s)	642
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	8 cut(s)	14, 45, 65, 223, 347, 358, 371, 596
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 268, 602, 611
HpyF3I	CTNAG	2 cut(s)	153, 530
HpySE526I	ACGT	1 cut(s)	456
HspAI	GCGC	1 cut(s)	398
Kzo9I	GATC	1 cut(s)	338
LpnPI	CCDG	9 cut(s)	75, 79, 165, 214, 223, 248, 250, 257, 336
LweI	GCATC	2 cut(s)	66, 358
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	1 cut(s)	340
MboI	GATC	1 cut(s)	338
MboII	GAAGA	7 cut(s)	31, 145, 223, 415, 592, 595, 645
MfeI	CAATTG	1 cut(s)	615
MflI	RGATCY	1 cut(s)	338
MhlI	GDGCHC	1 cut(s)	349
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	6 cut(s)	291, 312, 461, 516, 588, 615
MluNI	TGGCCA	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	33
MnlI	CCTC	6 cut(s)	15, 222, 415, 456, 459, 463
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	4 cut(s)	206, 459, 515, 591
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	238
MunI	CAATTG	1 cut(s)	615
Mva1269I	GAATGC	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	238
MwoI	GCNNNNNNNGC	4 cut(s)	103, 268, 602, 611
NdeII	GATC	1 cut(s)	338
NsbI	TGCGCA	1 cut(s)	399
NspV	TTCGAA	1 cut(s)	578
PctI	GAATGC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	494, 566
PflMI	CCANNNNNTGG	1 cut(s)	629
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PshBI	ATTAAT	2 cut(s)	515, 591
PsiI	TTATAA	1 cut(s)	522
Psp1406I	AACGTT	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	4 cut(s)	206, 459, 515, 591
Sau3AI	GATC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	349
SfaNI	GCATC	2 cut(s)	66, 358
SfuI	TTCGAA	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	83
Sse9I	AATT	6 cut(s)	291, 312, 461, 516, 588, 615
SspI	AATATT	2 cut(s)	165, 191
StyD4I	CCNGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	642
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	2 cut(s)	503, 578
TasI	AATT	6 cut(s)	291, 312, 461, 516, 588, 615
TfiI	GAWTC	2 cut(s)	494, 566
Tru1I	TTAA	4 cut(s)	206, 459, 515, 591
Tru9I	TTAA	4 cut(s)	206, 459, 515, 591
TspDTI	ATGAA	3 cut(s)	32, 174, 183
Van91I	CCANNNNNTGG	1 cut(s)	629
VneI	GTGCAC	1 cut(s)	345
VspI	ATTAAT	2 cut(s)	515, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.