RLG00000013518

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004572
Physical Location & Seq
Reverse (-)
32587496 .. 32588421
926 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013518

Sequence Viewer

Length: 465 bp
ATGGCCAGCAGGCTTACTTTGCTTCACAAGGTTCAGATACAGAAGGCGAAGAAAGTAAGCTTCAATCCTGAGAATGAAATATTTTTCTTTGTGGCTACGCCCAAATATTCATACTCCAGTTTAAAGAAGAAACGGGTGCAAAAGAGGAAGTCCAGGGTGAAGCAAGCTTCAAAGAAACAGGTTCAGCTTGCTGAAAATGGGAGAGAGCTTGAACTCTCGAAGAAAGTCAGAAGCATTGAGGAAAATGTAGGTGGTGATAAGCCGCCTCCGGAGGTTAAGTTGAGTGAGGGAGTTGGTGGCGATGGAAACGATTCTATTTCGAGTGGAGTATTAATTTATAAAAAACTGAGAAGCAGAATGGTGGTGTGTAAATATGGTGGAGATTCAATGGTTTCGAAGAAGAAAATTAATGCAGAGAGTGATGTTGAAGTAATTGTGCCAAAAGGTGGAAGACTACTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.18

Weight (kDa)

10.06

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 339
AccB7I CCANNNNNTGG 1 cut(s) 446
AccIII TCCGGA 1 cut(s) 268
AciI CCGC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 5 cut(s) 64, 171, 212, 387, 428
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 4 cut(s) 60, 167, 187, 208
AluI AGCT 4 cut(s) 60, 167, 187, 208
Aor13HI TCCGGA 1 cut(s) 268
AoxI GGCC 1 cut(s) 3
ArsI GACNNNNNNTTYG 1 cut(s) 444
AseI ATTAAT 2 cut(s) 332, 408
Asp700I GAANNNNTTC 1 cut(s) 310
AsuHPI GGTGA 2 cut(s) 169, 266
AsuII TTCGAA 1 cut(s) 395
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 457
BccI CCATC 1 cut(s) 296
BciT130I CCWGG 1 cut(s) 154
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
Bme1390I CCNGG 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 457
BpmI CTGGAG 1 cut(s) 100
Bpu14I TTCGAA 1 cut(s) 395
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse1I ACTGG 1 cut(s) 117
BseAI TCCGGA 1 cut(s) 268
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMII CTCAG 2 cut(s) 60, 338
BseNI ACTGG 1 cut(s) 117
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 446
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 395
Bsp13I TCCGGA 1 cut(s) 268
BspACI CCGC 1 cut(s) 263
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 61, 339
BspEI TCCGGA 1 cut(s) 268
BspT104I TTCGAA 1 cut(s) 395
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 459
BstBI TTCGAA 1 cut(s) 395
BstC8I GCNNGC 4 cut(s) 7, 11, 165, 189
BstDEI CTNAG 2 cut(s) 69, 347
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 457
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 315
Cac8I GCNNGC 4 cut(s) 7, 11, 165, 189
CviJI RGCY 8 cut(s) 5, 13, 60, 95, 167, 187, 208, 262
CviKI_1 RGCY 8 cut(s) 5, 13, 60, 95, 167, 187, 208, 262
DdeI CTNAG 2 cut(s) 69, 347
DraI TTTAAA 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 3
EcoRII CCWGG 1 cut(s) 152
FaiI YATR 3 cut(s) 112, 339, 375
Fnu4HI GCNGC 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 263
GluI GCNGC 1 cut(s) 263
GsuI CTGGAG 1 cut(s) 100
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 269
HindIII AAGCTT 2 cut(s) 58, 165
HinfI GANTC 2 cut(s) 311, 383
HpaII CCGG 1 cut(s) 269
HphI GGTGA 2 cut(s) 169, 266
Hpy188I TCNGA 2 cut(s) 36, 230
Hpy188III TCNNGA 3 cut(s) 68, 217, 269
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 459
HpyCH4V TGCA 2 cut(s) 139, 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 2 cut(s) 69, 347
Kpn2I TCCGGA 1 cut(s) 268
LpnPI CCDG 7 cut(s) 19, 81, 130, 139, 164, 166, 282
MboII GAAGA 6 cut(s) 61, 139, 232, 409, 412, 462
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 333, 405, 432
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 138, 232, 265, 276, 280
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 268
MroXI GAANNNNTTC 1 cut(s) 310
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 122, 276, 332, 408
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 19
NspV TTCGAA 1 cut(s) 395
PdmI GAANNNNTTC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 311, 383
PflMI CCANNNNNTGG 1 cut(s) 446
PkrI GCNGC 1 cut(s) 264
PshBI ATTAAT 2 cut(s) 332, 408
PsiI TTATAA 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
SaqAI TTAA 4 cut(s) 122, 276, 332, 408
SatI GCNGC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 154
SetI ASST 9 cut(s) 33, 62, 169, 183, 189, 210, 253, 276, 448
SfuI TTCGAA 1 cut(s) 395
Sse9I AATT 3 cut(s) 333, 405, 432
SsiI CCGC 1 cut(s) 263
SspI AATATT 2 cut(s) 81, 107
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 459
TaqI TCGA 3 cut(s) 218, 320, 395
TasI AATT 3 cut(s) 333, 405, 432
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 2 cut(s) 311, 383
Tru1I TTAA 4 cut(s) 122, 276, 332, 408
Tru9I TTAA 4 cut(s) 122, 276, 332, 408
TspDTI ATGAA 2 cut(s) 90, 99
Van91I CCANNNNNTGG 1 cut(s) 446
VspI ATTAAT 2 cut(s) 332, 408
XmnI GAANNNNTTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.