Rh6AG200700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004572
Physical Location & Seq
Forward (+)
36019433 .. 36037021
17589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG200700.1

Sequence Viewer

Length: 927 bp
ATGGGAGTTTTGGTGGAAGTGAGTATCAGAGGCTTCCTCTTCCCCACAATTGGAAACATTGGAATGATTTGGAGTGGAGAAAGAGTAGAAGCTAGAGTGCTTGAAGAAAACATGACTGCCTACTTTAATATGCTACAAGGTTTTCTTCTTCTTTCACATGGGAGTATGGTTGGTGCAGAGCCTACTCTTTCTTCTTGTGTCCGCGCATCTGTAAAGCAAGTTGTTGACTCCAATTTTAAGTTGATGAAGGAATCTATCTCGTTGTATGGTCTCATGGAGATGGATTTCTATGCAATGAAGAGGAAGCAACTTCAAAGACTCTGCAAAAAGCATAGCATCCCTGCAAACATAGGGAACACAGAAATGGCCAACAGGCTTACTTTGCTTCACAAGGTTCAGATACAGAAGGCGAAGAAGGTAAGCTTCAATCCTGAGAATGAAATATTTTTCTTTGTGGCTACGCCCAAATATTCATACTCCAGTTTAAAGAAGAAACGGGTGCAAAAGAGGAAGTCCAGGGTGAAGCAAGCTTCAAAGAAGCAGGTTCAGCTTGCTGAAAATGGCAGAGAACTTGAACTCTCGGTGAGCATAATTGTTACCCCAGTTAGACATATAAGATCTCGTGCACAGAGAATGCAACAAGGTGATGCAGAAGCAATGTGTTTGCCTTTTTCTGCGCAGAAGAAAGTCAGAAGCATTGAGGAAAATGTAGTTGGTGATAAGCCGCCTCCGAAGGTTAAGTTGAGTGAGGGAGTTGGTGGTGATACAAAAGATTCTATTTCGAGTGGAGTATTAATTTATAAAAAACTGAGAAGCAGAATGGTGGTGTGTAAATATGGTGGAGATTCAATGGTTTCGAAGAAGAAAATTAATGCAGAGAGTGCTGTTGAAGCAATTGTGCCAAAAGGTAGAAGACTACTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

34.56

Weight (kDa)

10.05

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCIP_N PF13324 19 - 90 4.1e-15 Grap2 and cyclin-D-interacting, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 801
Acc16I TGCGCA 1 cut(s) 678
Acc36I ACCTGC 1 cut(s) 532
AccII CGCG 1 cut(s) 204
AciI CCGC 2 cut(s) 202, 725
AcoI YGGCCR 1 cut(s) 366
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 7 cut(s) 104, 314, 427, 534, 575, 849, 890
AjnI CCWGG 1 cut(s) 515
AjuI GAANNNNNNNTTGG 2 cut(s) 696, 728
AluBI AGCT 4 cut(s) 92, 423, 530, 550
AluI AGCT 4 cut(s) 92, 423, 530, 550
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 1 cut(s) 275
Alw44I GTGCAC 1 cut(s) 624
AoxI GGCC 1 cut(s) 366
ApaLI GTGCAC 1 cut(s) 624
ArsI GACNNNNNNTTYG 1 cut(s) 906
AseI ATTAAT 2 cut(s) 794, 870
AspLEI GCGC 2 cut(s) 206, 679
AsuHPI GGTGA 5 cut(s) 532, 595, 656, 728, 773
AsuII TTCGAA 1 cut(s) 857
BaeGI GKGCMC 1 cut(s) 628
BalI TGGCCA 1 cut(s) 368
BauI CACGAG 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 919
Bbv12I GWGCWC 1 cut(s) 628
BccI CCATC 1 cut(s) 274
BciT130I CCWGG 1 cut(s) 517
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 532
BglII AGATCT 1 cut(s) 617
BisI GCNGC 1 cut(s) 725
BlsI GCNGC 1 cut(s) 726
Bme1390I CCNGG 1 cut(s) 517
BmrFI CCNGG 1 cut(s) 517
BmrI ACTGGG 1 cut(s) 596
BmsI GCATC 3 cut(s) 215, 345, 637
BmuI ACTGGG 1 cut(s) 596
BpiI GAAGAC 1 cut(s) 919
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 1 cut(s) 463
Bpu14I TTCGAA 1 cut(s) 857
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 516
BsaXI ACNNNNNCTCC 3 cut(s) 27, 69, 99
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 2 cut(s) 480, 602
Bse3DI GCAATG 2 cut(s) 300, 663
BseBI CCWGG 1 cut(s) 517
BseDI CCNNGG 1 cut(s) 516
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 2 cut(s) 300, 663
BseMII CTCAG 2 cut(s) 423, 800
BseNI ACTGG 2 cut(s) 480, 602
BseSI GKGCMC 1 cut(s) 628
BsgI GTGCAG 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 628
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 275
BsmI GAATGC 1 cut(s) 639
BsnI GGCC 1 cut(s) 368
Bso31I GGTCTC 1 cut(s) 275
Bsp119I TTCGAA 1 cut(s) 857
Bsp1286I GDGCHC 1 cut(s) 628
Bsp143I GATC 1 cut(s) 617
BspACI CCGC 2 cut(s) 202, 725
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 2 cut(s) 424, 801
BspFNI CGCG 1 cut(s) 204
BspMI ACCTGC 1 cut(s) 532
BspT104I TTCGAA 1 cut(s) 857
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 2 cut(s) 300, 663
BsrI ACTGG 2 cut(s) 480, 602
BssECI CCNNGG 1 cut(s) 516
BssMI GATC 1 cut(s) 617
BssSI CACGAG 1 cut(s) 621
Bst2BI CACGAG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 517
Bst4CI ACNGT 1 cut(s) 921
Bst6I CTCTTC 2 cut(s) 44, 293
BstAPI GCANNNNNTGC 1 cut(s) 881
BstBI TTCGAA 1 cut(s) 857
BstC8I GCNNGC 2 cut(s) 528, 552
BstDEI CTNAG 2 cut(s) 432, 809
BstF5I GGATG 1 cut(s) 336
BstFNI CGCG 1 cut(s) 204
BstHHI GCGC 2 cut(s) 206, 679
BstKTI GATC 1 cut(s) 620
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 1 cut(s) 617
BstMWI GCNNNNNNNGC 4 cut(s) 382, 547, 881, 890
BstNI CCWGG 1 cut(s) 517
BstSCI CCNGG 1 cut(s) 515
BstSLI GKGCMC 1 cut(s) 628
BstUI CGCG 1 cut(s) 204
BstV2I GAAGAC 1 cut(s) 919
BstX2I RGATCY 1 cut(s) 617
BstYI RGATCY 1 cut(s) 617
BsuRI GGCC 1 cut(s) 368
BtsCI GGATG 1 cut(s) 336
BveI ACCTGC 1 cut(s) 532
Cac8I GCNNGC 2 cut(s) 528, 552
CfoI GCGC 2 cut(s) 206, 679
CviAII CATG 3 cut(s) 112, 158, 274
DdeI CTNAG 2 cut(s) 432, 809
DpnI GATC 1 cut(s) 619
DpnII GATC 1 cut(s) 617
DraI TTTAAA 1 cut(s) 486
EaeI YGGCCR 1 cut(s) 366
Eam1104I CTCTTC 2 cut(s) 44, 293
EarI CTCTTC 2 cut(s) 44, 293
Eco31I GGTCTC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 515
FaeI CATG 3 cut(s) 115, 161, 277
FalI AAGNNNNNCTT 4 cut(s) 129, 161, 407, 439
FatI CATG 3 cut(s) 111, 157, 273
Fnu4HI GCNGC 1 cut(s) 725
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 1 cut(s) 725
FspBI CTAG 1 cut(s) 93
FspI TGCGCA 1 cut(s) 678
GlaI GCGC 2 cut(s) 205, 678
GluI GCNGC 1 cut(s) 725
GsuI CTGGAG 1 cut(s) 463
HaeIII GGCC 1 cut(s) 368
HhaI GCGC 2 cut(s) 206, 679
Hin1II CATG 3 cut(s) 115, 161, 277
Hin6I GCGC 2 cut(s) 204, 677
HinP1I GCGC 2 cut(s) 204, 677
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HindIII AAGCTT 2 cut(s) 421, 528
HinfI GANTC 5 cut(s) 227, 251, 318, 773, 845
HphI GGTGA 5 cut(s) 532, 595, 656, 728, 773
Hpy166II GTNNAC 2 cut(s) 226, 626
Hpy188I TCNGA 4 cut(s) 29, 399, 692, 732
Hpy188III TCNNGA 1 cut(s) 431
Hpy8I GTNNAC 2 cut(s) 226, 626
HpyAV CCTTC 4 cut(s) 241, 400, 409, 727
HpyCH4III ACNGT 1 cut(s) 921
HpyCH4V TGCA 9 cut(s) 176, 293, 324, 344, 502, 626, 637, 650, 875
HpyF10VI GCNNNNNNNGC 4 cut(s) 382, 547, 881, 890
HpyF3I CTNAG 2 cut(s) 432, 809
Hsp92II CATG 3 cut(s) 115, 161, 277
HspAI GCGC 2 cut(s) 204, 677
Kzo9I GATC 1 cut(s) 617
LpnPI CCDG 8 cut(s) 354, 358, 444, 493, 502, 527, 529, 615
LweI GCATC 3 cut(s) 215, 345, 637
MaeI CTAG 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 595
MalI GATC 1 cut(s) 619
MboI GATC 1 cut(s) 617
MfeI CAATTG 2 cut(s) 48, 894
MflI RGATCY 1 cut(s) 617
MhlI GDGCHC 1 cut(s) 628
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 6 cut(s) 48, 232, 591, 795, 867, 894
MluNI TGGCCA 1 cut(s) 368
MlyI GAGTC 2 cut(s) 221, 312
MnlI CCTC 7 cut(s) 23, 47, 294, 501, 694, 738, 742
Mox20I TGGCCA 1 cut(s) 368
MscI TGGCCA 1 cut(s) 368
MseI TTAA 6 cut(s) 126, 237, 485, 738, 794, 870
MslI CAYNNNNRTG 3 cut(s) 62, 278, 362
Msp20I TGGCCA 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 517
MunI CAATTG 2 cut(s) 48, 894
Mva1269I GAATGC 1 cut(s) 639
MvaI CCWGG 1 cut(s) 517
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 4 cut(s) 382, 547, 881, 890
NdeII GATC 1 cut(s) 617
NlaIII CATG 3 cut(s) 115, 161, 277
NsbI TGCGCA 1 cut(s) 678
NspV TTCGAA 1 cut(s) 857
PctI GAATGC 1 cut(s) 639
PfeI GAWTC 3 cut(s) 251, 773, 845
PkrI GCNGC 1 cut(s) 726
PleI GAGTC 2 cut(s) 221, 312
PpsI GAGTC 2 cut(s) 221, 312
PshBI ATTAAT 2 cut(s) 794, 870
PsiI TTATAA 1 cut(s) 801
Psp6I CCWGG 1 cut(s) 515
PspGI CCWGG 1 cut(s) 515
PsuI RGATCY 1 cut(s) 617
RseI CAYNNNNRTG 3 cut(s) 62, 278, 362
SaqAI TTAA 6 cut(s) 126, 237, 485, 738, 794, 870
SatI GCNGC 1 cut(s) 725
Sau3AI GATC 1 cut(s) 617
SchI GAGTC 2 cut(s) 221, 312
ScrFI CCNGG 1 cut(s) 517
SduI GDGCHC 1 cut(s) 628
SfaNI GCATC 3 cut(s) 215, 345, 637
SfuI TTCGAA 1 cut(s) 857
SmiMI CAYNNNNRTG 3 cut(s) 62, 278, 362
Sse9I AATT 6 cut(s) 48, 232, 591, 795, 867, 894
SsiI CCGC 2 cut(s) 202, 725
SspI AATATT 2 cut(s) 444, 470
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 515
TaaI ACNGT 1 cut(s) 921
TaqI TCGA 2 cut(s) 782, 857
TasI AATT 6 cut(s) 48, 232, 591, 795, 867, 894
TauI GCSGC 1 cut(s) 727
TfiI GAWTC 3 cut(s) 251, 773, 845
Tru1I TTAA 6 cut(s) 126, 237, 485, 738, 794, 870
Tru9I TTAA 6 cut(s) 126, 237, 485, 738, 794, 870
TspDTI ATGAA 4 cut(s) 260, 311, 453, 462
VneI GTGCAC 1 cut(s) 624
VspI ATTAAT 2 cut(s) 794, 870
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.