FvH4_2g16520

Isocitrate dehydrogenase NAD regulatory subunit 1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
14414502 .. 14417731
3230 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16520.t2

Sequence Viewer

Length: 1110 bp
ATGGCCCGCCGAGCCCTCCCCATCCTCAAGCAGCTCTCCCACCGCCCCACTCTCGGATCCTTCCACCCCAAACCCGACCCGAACACCCGATCCGTCACCTACATGCCCCGCCCCGGCGATGGAACCCCCCGCTGCGTGACTCTCATCCCCGGCGACGGGATCGGCCCTCTCGTCACCAACGCCGTCGAGCAGGTCATGGAGGCGATGCACGCGCCGGTGTTCTTCGAGCGGTATGACGTCCACGGCGACATGAGCCGCATCCCGCCGGAGGTGATGGACTCGATCCGGAAGAACAAGGTCTGCATAAAAGGCGGGCTGAAGACGCCGGTCGGCGGCGGCGTGAGCTCGCTTAATATGCAGCTGAGGAAGGAGCTTGATTTGTACGCGTCGCTGGTCAATTGCTTCAACCTTCCTGGACTCCCCACGCGCCACGAGAACGTGGACATTGTTGTCATCAGAGAGAACACCGAGGGCGAGTACGCCGGTCTCGAGCACGAGGTCGTTCCCGGCGTCGTGGAGAGCCTCAAGTTCTGCTCGGAACGTATAGCAAAGTATGCGTTTGAGTATGCATACTTGAACAACAGGAAGAAGGTGACTGCCGTTCACAAAGCCAACATCATGAAGCTTGCGGATGGTTTGTTCTTGGAGTCTTGCCGGGAGGTTGCCACAAAGTATCCGAGTATCAAGTACAATGAGATTATAGTGGACAATTGCTGTATGCAACTTGTTTCAAAGCCTGAGCAGTTTGACGTGATGGTTACTCCTAATCTTTATGGAAATCTAGTAGCAAATACAGCAGCTGGTATTGCTGGAGGCACTGGTGTCATGCCAGGAGGAAATGTGGGTGCTGATCATGCTGTTTTTGAGCAAGGTGCTTCAGCAGGAAACGTGGGAAATGAAAAGTTATGGGAGCAAAAGTCAGCCAATCCAGTTGCATTGCTCCTGTCATCAGCCATGATGTTGAGGCATCTCCAGTTTCCCTCATTTGCTGACCGTCTAGAAACAGCTGTGAAACGTGTAATTTCAGAAGGCAAGTACCGTACCAAAGATCTTGGAGGAGTAAGCACTACCCAAGAGGTGGTTGACGCTGTTATTTCTAATCTGGACTGA

Protein Analysis

370

Amino Acids

40.27

Weight (kDa)

7.11

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 46 - 368 6.8e-80 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 449
AatII GACGTC 1 cut(s) 240
Acc36I ACCTGC 1 cut(s) 181
AccB7I CCANNNNNTGG 1 cut(s) 1078
AccBSI CCGCTC 1 cut(s) 229
AccII CGCG 3 cut(s) 212, 386, 427
AccIII TCCGGA 1 cut(s) 285
AclWI GGATC 5 cut(s) 51, 64, 84, 167, 277
AcuI CTGAAG 2 cut(s) 338, 861
AcyI GRCGYC 3 cut(s) 237, 323, 510
AfaI GTAC 5 cut(s) 383, 479, 689, 1037, 1042
AfiI CCNNNNNNNGG 8 cut(s) 53, 113, 119, 155, 156, 268, 332, 1078
AflIII ACRYGT 2 cut(s) 384, 1015
AgsI TTSAA 3 cut(s) 406, 577, 732
AjiI CACGTC 1 cut(s) 751
AjnI CCWGG 2 cut(s) 412, 829
AloI GAACNNNNNNTCC 4 cut(s) 74, 106, 623, 655
AluBI AGCT 7 cut(s) 34, 345, 361, 373, 625, 800, 1007
AluI AGCT 7 cut(s) 34, 345, 361, 373, 625, 800, 1007
Alw21I GWGCWC 2 cut(s) 347, 495
Alw26I GTCTC 1 cut(s) 491
AlwI GGATC 5 cut(s) 51, 64, 84, 167, 277
AlwNI CAGNNNCTG 1 cut(s) 800
Ama87I CYCGRG 1 cut(s) 488
Aor13HI TCCGGA 1 cut(s) 285
AoxI GGCC 2 cut(s) 3, 163
ApeKI GCWGC 4 cut(s) 31, 132, 358, 797
AspLEI GCGC 2 cut(s) 214, 429
AspS9I GGNCC 2 cut(s) 4, 164
AsuC2I CCSGG 4 cut(s) 114, 150, 507, 656
AsuHPI GGTGA 4 cut(s) 88, 166, 283, 604
AvaI CYCGRG 1 cut(s) 488
BamHI GGATCC 1 cut(s) 56
BanII GRGCYC 2 cut(s) 16, 347
BauI CACGAG 2 cut(s) 431, 494
BbsI GAAGAC 1 cut(s) 326
Bbv12I GWGCWC 2 cut(s) 347, 495
BbvCI CCTCAGC 1 cut(s) 362
BbvI GCAGC 4 cut(s) 43, 119, 370, 809
BccI CCATC 5 cut(s) 29, 113, 268, 626, 748
BceAI ACGGC 3 cut(s) 167, 259, 584
BciT130I CCWGG 2 cut(s) 414, 831
BciVI GTATCC 1 cut(s) 684
BclI TGATCA 1 cut(s) 850
BcnI CCSGG 4 cut(s) 114, 150, 507, 656
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 2 cut(s) 782, 998
BfuAI ACCTGC 1 cut(s) 181
BfuI GTATCC 1 cut(s) 684
BglII AGATCT 1 cut(s) 1048
BisI GCNGC 7 cut(s) 32, 133, 256, 334, 337, 359, 798
BlsI GCNGC 7 cut(s) 33, 134, 257, 335, 338, 360, 799
Bme1390I CCNGG 6 cut(s) 114, 150, 414, 507, 656, 831
BmeT110I CYCGRG 1 cut(s) 488
BmgBI CACGTC 1 cut(s) 751
BmgT120I GGNCC 2 cut(s) 4, 164
BmiI GGNNCC 2 cut(s) 58, 124
BmrFI CCNGG 6 cut(s) 114, 150, 414, 507, 656, 831
BmsI GCATC 3 cut(s) 195, 267, 976
BoxI GACNNNNGTC 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 326
BpmI CTGGAG 2 cut(s) 831, 956
Bpu10I CCTNAGC 2 cut(s) 362, 738
BpuEI CTTGAG 2 cut(s) 11, 509
BpuMI CCSGG 4 cut(s) 114, 150, 507, 656
BsaHI GRCGYC 3 cut(s) 237, 323, 510
BsaI GGTCTC 1 cut(s) 491
BsaJI CCNNGG 4 cut(s) 112, 148, 241, 468
BsaWI WCCGGW 1 cut(s) 285
BsaXI ACNNNNNCTCC 4 cut(s) 825, 855, 902, 932
Bsc4I CCNNNNNNNGG 8 cut(s) 53, 113, 119, 155, 156, 268, 332, 1078
Bse118I RCCGGY 3 cut(s) 214, 325, 482
Bse1I ACTGG 3 cut(s) 823, 929, 973
Bse3DI GCAATG 1 cut(s) 935
BseAI TCCGGA 1 cut(s) 285
BseBI CCWGG 2 cut(s) 414, 831
BseDI CCNNGG 4 cut(s) 112, 148, 241, 468
BseGI GGATG 4 cut(s) 21, 144, 258, 637
BseLI CCNNNNNNNGG 8 cut(s) 53, 113, 119, 155, 156, 268, 332, 1078
BseMI GCAATG 1 cut(s) 935
BseMII CTCAG 2 cut(s) 353, 729
BseNI ACTGG 3 cut(s) 823, 929, 973
BseRI GAGGAG 1 cut(s) 1071
BseXI GCAGC 4 cut(s) 43, 119, 370, 809
Bsh1236I CGCG 3 cut(s) 212, 386, 427
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 2 cut(s) 5, 165
BsiEI CGRYCG 1 cut(s) 330
BsiHKAI GWGCWC 2 cut(s) 347, 495
BsiHKCI CYCGRG 1 cut(s) 488
BsiSI CCGG 9 cut(s) 114, 150, 215, 266, 286, 326, 483, 507, 655
BslI CCNNNNNNNGG 8 cut(s) 53, 113, 119, 155, 156, 268, 332, 1078
BsmAI GTCTC 1 cut(s) 491
BsnI GGCC 2 cut(s) 5, 165
Bso31I GGTCTC 1 cut(s) 491
BsoBI CYCGRG 1 cut(s) 488
Bsp1286I GDGCHC 3 cut(s) 16, 347, 495
Bsp13I TCCGGA 1 cut(s) 285
Bsp143I GATC 6 cut(s) 56, 89, 159, 282, 850, 1048
BspANI GGCC 2 cut(s) 5, 165
BspCNI CTCAG 2 cut(s) 354, 730
BspEI TCCGGA 1 cut(s) 285
BspFNI CGCG 3 cut(s) 212, 386, 427
BspHI TCATGA 1 cut(s) 618
BspLI GGNNCC 2 cut(s) 58, 124
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 5 cut(s) 51, 64, 84, 167, 277
BspTNI GGTCTC 1 cut(s) 491
BsrBI CCGCTC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 935
BsrFI RCCGGY 3 cut(s) 214, 325, 482
BsrI ACTGG 3 cut(s) 823, 929, 973
BssAI RCCGGY 3 cut(s) 214, 325, 482
BssECI CCNNGG 4 cut(s) 112, 148, 241, 468
BssMI GATC 6 cut(s) 56, 89, 159, 282, 850, 1048
BssNI GRCGYC 3 cut(s) 237, 323, 510
BssSI CACGAG 2 cut(s) 431, 494
Bst2BI CACGAG 2 cut(s) 431, 494
Bst2UI CCWGG 2 cut(s) 414, 831
Bst4CI ACNGT 2 cut(s) 995, 1040
BstACI GRCGYC 3 cut(s) 237, 323, 510
BstAPI GCANNNNNTGC 1 cut(s) 554
BstC8I GCNNGC 5 cut(s) 7, 210, 314, 347, 627
BstDEI CTNAG 2 cut(s) 362, 738
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 4 cut(s) 21, 144, 258, 637
BstFNI CGCG 3 cut(s) 212, 386, 427
BstHHI GCGC 2 cut(s) 214, 429
BstKTI GATC 6 cut(s) 59, 92, 162, 285, 853, 1051
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 6 cut(s) 56, 89, 159, 282, 850, 1048
BstMCI CGRYCG 1 cut(s) 330
BstNI CCWGG 2 cut(s) 414, 831
BstNSI RCATGY 1 cut(s) 106
BstPAI GACNNNNGTC 1 cut(s) 326
BstSCI CCNGG 6 cut(s) 112, 148, 412, 505, 654, 829
BstUI CGCG 3 cut(s) 212, 386, 427
BstV1I GCAGC 4 cut(s) 43, 119, 370, 809
BstV2I GAAGAC 1 cut(s) 326
BstX2I RGATCY 2 cut(s) 56, 1048
BstYI RGATCY 2 cut(s) 56, 1048
BsuI GTATCC 1 cut(s) 684
BsuRI GGCC 2 cut(s) 5, 165
BtgI CCRYGG 1 cut(s) 241
BtgZI GCGATG 2 cut(s) 132, 218
BtrI CACGTC 1 cut(s) 751
BtsCI GGATG 4 cut(s) 21, 144, 258, 637
BtsIMutI CAGTG 1 cut(s) 816
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 5 cut(s) 7, 210, 314, 347, 627
CaiI CAGNNNCTG 1 cut(s) 800
CciI TCATGA 1 cut(s) 618
CfoI GCGC 2 cut(s) 214, 429
Cfr10I RCCGGY 3 cut(s) 214, 325, 482
Cfr13I GGNCC 2 cut(s) 4, 164
CseI GACGC 4 cut(s) 331, 375, 499, 1094
Csp6I GTAC 5 cut(s) 382, 478, 688, 1036, 1041
CviAII CATG 7 cut(s) 103, 196, 250, 619, 826, 854, 955
CviQI GTAC 5 cut(s) 382, 478, 688, 1036, 1041
DdeI CTNAG 2 cut(s) 362, 738
DpnI GATC 6 cut(s) 58, 91, 161, 284, 852, 1050
DpnII GATC 6 cut(s) 56, 89, 159, 282, 850, 1048
DrdI GACNNNNNNGTC 1 cut(s) 449
DseDI GACNNNNNNGTC 1 cut(s) 449
Ecl136II GAGCTC 1 cut(s) 345
Eco24I GRGCYC 2 cut(s) 16, 347
Eco31I GGTCTC 1 cut(s) 491
Eco53kI GAGCTC 1 cut(s) 345
Eco57I CTGAAG 2 cut(s) 338, 861
Eco88I CYCGRG 1 cut(s) 488
EcoICRI GAGCTC 1 cut(s) 345
EcoRII CCWGG 2 cut(s) 412, 829
EcoT22I ATGCAT 1 cut(s) 571
EcoT38I GRGCYC 2 cut(s) 16, 347
FaeI CATG 7 cut(s) 106, 199, 253, 622, 829, 857, 958
FatI CATG 7 cut(s) 102, 195, 249, 618, 825, 853, 954
FauI CCCGC 5 cut(s) 14, 116, 137, 270, 305
FbaI TGATCA 1 cut(s) 850
Fnu4HI GCNGC 7 cut(s) 32, 133, 256, 334, 337, 359, 798
FokI GGATG 4 cut(s) 8, 131, 245, 644
FriOI GRGCYC 2 cut(s) 16, 347
Fsp4HI GCNGC 7 cut(s) 32, 133, 256, 334, 337, 359, 798
FspBI CTAG 2 cut(s) 782, 998
GlaI GCGC 2 cut(s) 213, 428
GluI GCNGC 7 cut(s) 32, 133, 256, 334, 337, 359, 798
GsuI CTGGAG 2 cut(s) 831, 956
HaeIII GGCC 2 cut(s) 5, 165
HapII CCGG 9 cut(s) 114, 150, 215, 266, 286, 326, 483, 507, 655
HgaI GACGC 4 cut(s) 331, 375, 499, 1094
HhaI GCGC 2 cut(s) 214, 429
Hin1I GRCGYC 3 cut(s) 237, 323, 510
Hin1II CATG 7 cut(s) 106, 199, 253, 622, 829, 857, 958
Hin6I GCGC 2 cut(s) 212, 427
HinP1I GCGC 2 cut(s) 212, 427
HincII GTYRAC 1 cut(s) 1084
HindII GTYRAC 1 cut(s) 1084
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 4 cut(s) 139, 278, 417, 647
HpaII CCGG 9 cut(s) 114, 150, 215, 266, 286, 326, 483, 507, 655
HphI GGTGA 4 cut(s) 88, 166, 283, 604
Hpy166II GTNNAC 5 cut(s) 241, 442, 604, 706, 1084
Hpy188I TCNGA 5 cut(s) 56, 458, 538, 678, 1027
Hpy188III TCNNGA 5 cut(s) 286, 488, 619, 998, 1103
Hpy8I GTNNAC 5 cut(s) 241, 442, 604, 706, 1084
Hpy99I CGWCG 4 cut(s) 158, 188, 391, 515
HpyAV CCTTC 5 cut(s) 70, 361, 419, 583, 1022
HpyCH4III ACNGT 2 cut(s) 995, 1040
HpyCH4IV ACGT 6 cut(s) 237, 438, 541, 750, 888, 1015
HpyCH4V TGCA 6 cut(s) 208, 303, 358, 569, 721, 935
HpyF3I CTNAG 2 cut(s) 362, 738
HpySE526I ACGT 6 cut(s) 237, 438, 541, 750, 888, 1015
Hsp92I GRCGYC 3 cut(s) 237, 323, 510
Hsp92II CATG 7 cut(s) 106, 199, 253, 622, 829, 857, 958
HspAI GCGC 2 cut(s) 212, 427
Kpn2I TCCGGA 1 cut(s) 285
Ksp22I TGATCA 1 cut(s) 850
Kzo9I GATC 6 cut(s) 56, 89, 159, 282, 850, 1048
LmnI GCTCC 3 cut(s) 370, 910, 945
Lsp1109I GCAGC 4 cut(s) 43, 119, 370, 809
LweI GCATC 3 cut(s) 195, 267, 976
MaeI CTAG 2 cut(s) 782, 998
MaeII ACGT 6 cut(s) 237, 438, 541, 750, 888, 1015
MaeIII GTNAC 5 cut(s) 94, 136, 172, 592, 757
MalI GATC 6 cut(s) 58, 91, 161, 284, 852, 1050
MbiI CCGCTC 1 cut(s) 229
MboI GATC 6 cut(s) 56, 89, 159, 282, 850, 1048
MboII GAAGA 4 cut(s) 214, 301, 331, 598
MfeI CAATTG 2 cut(s) 397, 709
MflI RGATCY 2 cut(s) 56, 1048
MhlI GDGCHC 3 cut(s) 16, 347, 495
MluCI AATT 3 cut(s) 397, 709, 1020
MluI ACGCGT 1 cut(s) 384
MlyI GAGTC 4 cut(s) 133, 272, 411, 656
Mph1103I ATGCAT 1 cut(s) 571
MroI TCCGGA 1 cut(s) 285
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 101
MspA1I CMGCKG 4 cut(s) 132, 361, 800, 1007
MspI CCGG 9 cut(s) 114, 150, 215, 266, 286, 326, 483, 507, 655
MspR9I CCNGG 6 cut(s) 114, 150, 414, 507, 656, 831
MunI CAATTG 2 cut(s) 397, 709
MvaI CCWGG 2 cut(s) 414, 831
MvnI CGCG 3 cut(s) 212, 386, 427
NciI CCSGG 4 cut(s) 114, 150, 507, 656
NdeII GATC 6 cut(s) 56, 89, 159, 282, 850, 1048
NlaIII CATG 7 cut(s) 106, 199, 253, 622, 829, 857, 958
NlaIV GGNNCC 2 cut(s) 58, 124
NmeAIII GCCGAG 1 cut(s) 35
NmuCI GTSAC 4 cut(s) 94, 136, 172, 592
NsiI ATGCAT 1 cut(s) 571
NspI RCATGY 1 cut(s) 106
PaeR7I CTCGAG 1 cut(s) 488
PagI TCATGA 1 cut(s) 618
PcsI WCGNNNNNNNCGW 5 cut(s) 168, 243, 336, 486, 507
PflMI CCANNNNNTGG 1 cut(s) 1078
PfoI TCCNGGA 1 cut(s) 412
PkrI GCNGC 7 cut(s) 33, 134, 257, 335, 338, 360, 799
PleI GAGTC 4 cut(s) 133, 272, 411, 655
PpsI GAGTC 4 cut(s) 133, 272, 411, 655
PshAI GACNNNNGTC 1 cut(s) 326
Psp124BI GAGCTC 1 cut(s) 347
Psp6I CCWGG 2 cut(s) 412, 829
PspGI CCWGG 2 cut(s) 412, 829
PspN4I GGNNCC 2 cut(s) 58, 124
PspPI GGNCC 2 cut(s) 4, 164
PstNI CAGNNNCTG 1 cut(s) 800
PsuI RGATCY 2 cut(s) 56, 1048
PvuII CAGCTG 3 cut(s) 361, 800, 1007
RsaI GTAC 5 cut(s) 383, 479, 689, 1037, 1042
RsaNI GTAC 5 cut(s) 382, 478, 688, 1036, 1041
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 1 cut(s) 347
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 7 cut(s) 32, 133, 256, 334, 337, 359, 798
Sau3AI GATC 6 cut(s) 56, 89, 159, 282, 850, 1048
Sau96I GGNCC 2 cut(s) 4, 164
SchI GAGTC 4 cut(s) 133, 272, 411, 656
ScrFI CCNGG 6 cut(s) 114, 150, 414, 507, 656, 831
SduI GDGCHC 3 cut(s) 16, 347, 495
SfaNI GCATC 3 cut(s) 195, 267, 976
Sfr274I CTCGAG 1 cut(s) 488
SgrAI CRCCGGYG 1 cut(s) 214
SlaI CTCGAG 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 3 cut(s) 26, 488, 524
SmoI CTYRAG 3 cut(s) 26, 488, 524
Sse9I AATT 3 cut(s) 397, 709, 1020
SspMI CTAG 2 cut(s) 782, 998
SstI GAGCTC 1 cut(s) 347
StyD4I CCNGG 6 cut(s) 112, 148, 412, 505, 654, 829
TaaI ACNGT 2 cut(s) 995, 1040
TaiI ACGT 6 cut(s) 240, 441, 544, 753, 891, 1018
TaqI TCGA 4 cut(s) 186, 225, 281, 489
TasI AATT 3 cut(s) 397, 709, 1020
TatI WGTACW 1 cut(s) 687
TauI GCSGC 3 cut(s) 258, 336, 339
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 823
TseFI GTSAC 4 cut(s) 94, 136, 172, 592
TseI GCWGC 4 cut(s) 31, 132, 358, 797
Tsp45I GTSAC 4 cut(s) 94, 136, 172, 592
TspDTI ATGAA 2 cut(s) 635, 912
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 1 cut(s) 823
Van91I CCANNNNNTGG 1 cut(s) 1078
XbaI TCTAGA 1 cut(s) 997
XceI RCATGY 1 cut(s) 106
XhoI CTCGAG 1 cut(s) 488
XspI CTAG 2 cut(s) 782, 998
ZraI GACGTC 1 cut(s) 238
Zsp2I ATGCAT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.