MD10G1138600.v1.1

Isocitrate dehydrogenase NAD regulatory subunit 1

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
22356477 .. 22360015
3539 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1138600.v1.1.491

Sequence Viewer

Length: 1122 bp
ATGGCCCGTCGGACCCTCCCGATCCTAAAAAACCTCACCCACCGCCCCACGCCCGCACACTTCCTTCCCAAACCCGACCCGAACACCCGATCCGTCACCTACATGCCCCGACCCGGAGACGGTGCCCCGCGGCCCGTAACCCTGATCCCTGGCGACGGAATCGGCCCGCTCGTCACCAACGCCGTCGAGCAAGTCATGGAAGCGATGCACGCTCCCGTGTACTTCGAGCGATACGACGTCCACGGCGACCTGAAGCGGGTCCCGCCGGAGGTGATCGAGTCGATCCGGAAAAACAAGGTGTGCTTGAAGGGCGGCCTGAAGACTCCGATGGGCGGCGGAGTGAGCTCGCTAAACGTCCAGCTGAGAAAAGAGCTCGACCTGTACGCGTCGCTAGTCAACTGCTTCAACCTCCCCGGCCTACCCACCCGCCACGAGAACGTGGACATTGTCGTAATTAGAGAGAACACCGAGGGTGAATATGCCGGGCTCGAGCACGAGGTCGTCCCCGGCGTCGTCGAAAGCCTCAAGGTGATCACAAAGTTCTGCTCGGAGCGAATCGCCAAGTACGCTTTCGAGTATGCGTATTTGAACAACAGGAAGACGGTGACCGCTGTGCACAAAGCCAACATTATGAAGCTGGCTGATGGGTTGTTCTTGGAGTCCTGCAGAGAGGTTGCTAAAAAGTACCCAAGTATTAACTACAACGAGATCATTGTGGACAACTGCTGTATGCAACTCGTTTCGAAGCCGGAGCAATTTGATGTGATGGTCACTCCCAATCTTTATGGAAATCTAGTGGCAAATACGGCAGCTGGTATTGCTGGAGGCACTGGTGTCATGCCAGGAGGAAATGTGGGTGCTGATCACGCTGTTTTTGAGCAAGGTGCTTCAGCAGGAAATGTCGGAAATGAAAAGTTATGGGAGCAAAAGAAGGCCAATCCAGTGGCTTTGCTTCTGTCATCAGCAATGATGTTGAGGCATCTCCAGTTTCCTTCATTTGCTGATCGACTTGAAACAGCGGTGAAACGTGTAATCTCAGAAGGCAAGTACCGGACAAAAGATCTCGGTGGAGTCAGCAGCACCCAAGAGGTTGTTGATGCCGTTATTGCTAACCTGGACTGA

Protein Analysis

374

Amino Acids

40.75

Weight (kDa)

8.11

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 46 - 368 3e-80 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 122
AccBSI CCGCTC 1 cut(s) 169
AccII CGCG 2 cut(s) 130, 386
AccIII TCCGGA 1 cut(s) 285
AclWI GGATC 4 cut(s) 16, 84, 139, 277
AcuI CTGAAG 3 cut(s) 272, 338, 873
AcyI GRCGYC 2 cut(s) 237, 510
AfaI GTAC 5 cut(s) 221, 383, 566, 686, 1049
AfiI CCNNNNNNNGG 6 cut(s) 113, 119, 155, 256, 268, 332
AflIII ACRYGT 2 cut(s) 384, 1027
AgsI TTSAA 4 cut(s) 307, 406, 589, 1013
AjnI CCWGG 3 cut(s) 148, 841, 1113
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
AloI GAACNNNNNNTCC 2 cut(s) 74, 106
AluBI AGCT 5 cut(s) 345, 361, 373, 637, 812
AluI AGCT 5 cut(s) 345, 361, 373, 637, 812
Alw21I GWGCWC 4 cut(s) 347, 375, 495, 618
Alw26I GTCTC 1 cut(s) 111
Alw44I GTGCAC 1 cut(s) 614
AlwI GGATC 4 cut(s) 16, 84, 139, 277
Ama87I CYCGRG 1 cut(s) 488
Aor13HI TCCGGA 1 cut(s) 285
AoxI GGCC 6 cut(s) 3, 131, 163, 313, 415, 933
ApaLI GTGCAC 1 cut(s) 614
ApeKI GCWGC 2 cut(s) 809, 1077
AspS9I GGNCC 5 cut(s) 4, 12, 132, 164, 259
AsuC2I CCSGG 4 cut(s) 114, 414, 484, 507
AsuHPI GGTGA 8 cut(s) 28, 88, 166, 283, 485, 541, 616, 1033
AsuII TTCGAA 1 cut(s) 743
AvaI CYCGRG 1 cut(s) 488
AvaII GGWCC 2 cut(s) 12, 259
BaeGI GKGCMC 2 cut(s) 127, 618
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 3 cut(s) 347, 375, 489
BauI CACGAG 2 cut(s) 431, 494
BbsI GAAGAC 2 cut(s) 326, 605
Bbv12I GWGCWC 4 cut(s) 347, 375, 495, 618
BbvI GCAGC 2 cut(s) 821, 1089
BccI CCATC 3 cut(s) 322, 638, 760
BceAI ACGGC 4 cut(s) 167, 259, 822, 1085
BciT130I CCWGG 3 cut(s) 150, 843, 1115
BclI TGATCA 2 cut(s) 531, 862
BcnI CCSGG 4 cut(s) 114, 414, 484, 507
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 2 cut(s) 392, 794
BfmI CTRYAG 1 cut(s) 664
BglII AGATCT 1 cut(s) 1060
BisI GCNGC 5 cut(s) 131, 313, 334, 810, 1078
BlsI GCNGC 5 cut(s) 132, 314, 335, 811, 1079
Bme1390I CCNGG 7 cut(s) 114, 150, 414, 484, 507, 843, 1115
Bme18I GGWCC 2 cut(s) 12, 259
BmeT110I CYCGRG 1 cut(s) 488
BmgT120I GGNCC 5 cut(s) 4, 12, 132, 164, 259
BmiI GGNNCC 4 cut(s) 14, 124, 260, 261
BmrFI CCNGG 7 cut(s) 114, 150, 414, 484, 507, 843, 1115
BmsI GCATC 3 cut(s) 195, 988, 1087
BpiI GAAGAC 2 cut(s) 326, 605
BpmI CTGGAG 2 cut(s) 843, 968
Bpu14I TTCGAA 1 cut(s) 743
BpuEI CTTGAG 1 cut(s) 509
BpuMI CCSGG 4 cut(s) 114, 414, 484, 507
BsaHI GRCGYC 2 cut(s) 237, 510
BsaJI CCNNGG 6 cut(s) 128, 148, 241, 412, 468, 505
BsaWI WCCGGW 2 cut(s) 285, 1050
BsaXI ACNNNNNCTCC 2 cut(s) 837, 867
Bsc4I CCNNNNNNNGG 6 cut(s) 113, 119, 155, 256, 268, 332
Bse1I ACTGG 3 cut(s) 835, 941, 985
Bse3DI GCAATG 1 cut(s) 972
BseAI TCCGGA 1 cut(s) 285
BseBI CCWGG 3 cut(s) 150, 843, 1115
BseDI CCNNGG 6 cut(s) 128, 148, 241, 412, 468, 505
BseLI CCNNNNNNNGG 6 cut(s) 113, 119, 155, 256, 268, 332
BseMI GCAATG 1 cut(s) 972
BseMII CTCAG 2 cut(s) 353, 1050
BseNI ACTGG 3 cut(s) 835, 941, 985
BseSI GKGCMC 2 cut(s) 127, 618
BseXI GCAGC 2 cut(s) 821, 1089
Bsh1236I CGCG 2 cut(s) 130, 386
BshFI GGCC 6 cut(s) 5, 133, 165, 315, 417, 935
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 4 cut(s) 347, 375, 495, 618
BsiHKCI CYCGRG 1 cut(s) 488
BsiSI CCGG 8 cut(s) 114, 266, 286, 414, 483, 507, 749, 1051
BslFI GGGAC 2 cut(s) 245, 488
BslI CCNNNNNNNGG 6 cut(s) 113, 119, 155, 256, 268, 332
BsmAI GTCTC 1 cut(s) 111
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 2 cut(s) 245, 488
BsnI GGCC 6 cut(s) 5, 133, 165, 315, 417, 935
BsoBI CYCGRG 1 cut(s) 488
Bsp119I TTCGAA 1 cut(s) 743
Bsp1286I GDGCHC 6 cut(s) 127, 347, 375, 489, 495, 618
Bsp13I TCCGGA 1 cut(s) 285
BspANI GGCC 6 cut(s) 5, 133, 165, 315, 417, 935
BspCNI CTCAG 2 cut(s) 354, 1049
BspEI TCCGGA 1 cut(s) 285
BspFNI CGCG 2 cut(s) 130, 386
BspLI GGNNCC 4 cut(s) 14, 124, 260, 261
BspMAI CTGCAG 1 cut(s) 668
BspPI GGATC 4 cut(s) 16, 84, 139, 277
BspT104I TTCGAA 1 cut(s) 743
BspT107I GGYRCC 1 cut(s) 122
BsrBI CCGCTC 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 972
BsrI ACTGG 3 cut(s) 835, 941, 985
BssECI CCNNGG 6 cut(s) 128, 148, 241, 412, 468, 505
BssNI GRCGYC 2 cut(s) 237, 510
BssSI CACGAG 2 cut(s) 431, 494
Bst2BI CACGAG 2 cut(s) 431, 494
Bst2UI CCWGG 3 cut(s) 150, 843, 1115
Bst4CI ACNGT 2 cut(s) 122, 604
BstACI GRCGYC 2 cut(s) 237, 510
BstBI TTCGAA 1 cut(s) 743
BstC8I GCNNGC 5 cut(s) 54, 167, 210, 347, 639
BstDEI CTNAG 2 cut(s) 362, 1036
BstDSI CCRYGG 2 cut(s) 128, 241
BstEII GGTNACC 1 cut(s) 604
BstFNI CGCG 2 cut(s) 130, 386
BstMAI GTCTC 1 cut(s) 111
BstMWI GCNNNNNNNGC 9 cut(s) 209, 262, 309, 342, 566, 806, 818, 866, 1106
BstNI CCWGG 3 cut(s) 150, 843, 1115
BstNSI RCATGY 1 cut(s) 106
BstPI GGTNACC 1 cut(s) 604
BstSCI CCNGG 7 cut(s) 112, 148, 412, 482, 505, 841, 1113
BstSFI CTRYAG 1 cut(s) 664
BstSLI GKGCMC 2 cut(s) 127, 618
BstUI CGCG 2 cut(s) 130, 386
BstV1I GCAGC 2 cut(s) 821, 1089
BstV2I GAAGAC 2 cut(s) 326, 605
BstX2I RGATCY 1 cut(s) 1060
BstXI CCANNNNNNTGG 1 cut(s) 943
BstYI RGATCY 1 cut(s) 1060
BsuRI GGCC 6 cut(s) 5, 133, 165, 315, 417, 935
BtgI CCRYGG 2 cut(s) 128, 241
BtgZI GCGATG 1 cut(s) 218
BtsIMutI CAGTG 2 cut(s) 828, 948
Cac8I GCNNGC 5 cut(s) 54, 167, 210, 347, 639
Cfr13I GGNCC 5 cut(s) 4, 12, 132, 164, 259
Cfr42I CCGCGG 1 cut(s) 131
CseI GACGC 2 cut(s) 375, 499
Csp6I GTAC 5 cut(s) 220, 382, 565, 685, 1048
CviAII CATG 3 cut(s) 103, 196, 838
CviQI GTAC 5 cut(s) 220, 382, 565, 685, 1048
DdeI CTNAG 2 cut(s) 362, 1036
EciI GGCGGA 1 cut(s) 351
Ecl136II GAGCTC 2 cut(s) 345, 373
Eco24I GRGCYC 3 cut(s) 347, 375, 489
Eco47I GGWCC 2 cut(s) 12, 259
Eco53kI GAGCTC 2 cut(s) 345, 373
Eco57I CTGAAG 3 cut(s) 272, 338, 873
Eco88I CYCGRG 1 cut(s) 488
Eco91I GGTNACC 1 cut(s) 604
EcoICRI GAGCTC 2 cut(s) 345, 373
EcoO109I RGGNCCY 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 604
EcoRII CCWGG 3 cut(s) 148, 841, 1113
EcoT38I GRGCYC 3 cut(s) 347, 375, 489
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 3 cut(s) 106, 199, 841
FaiI YATR 9 cut(s) 104, 197, 480, 579, 632, 731, 786, 839, 919
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FaqI GGGAC 2 cut(s) 245, 488
FatI CATG 3 cut(s) 102, 195, 837
FauI CCCGC 6 cut(s) 61, 135, 174, 249, 270, 434
FbaI TGATCA 2 cut(s) 531, 862
Fnu4HI GCNGC 5 cut(s) 131, 313, 334, 810, 1078
FriOI GRGCYC 3 cut(s) 347, 375, 489
Fsp4HI GCNGC 5 cut(s) 131, 313, 334, 810, 1078
FspBI CTAG 2 cut(s) 392, 794
GluI GCNGC 5 cut(s) 131, 313, 334, 810, 1078
GsuI CTGGAG 2 cut(s) 843, 968
HaeIII GGCC 6 cut(s) 5, 133, 165, 315, 417, 935
HapII CCGG 8 cut(s) 114, 266, 286, 414, 483, 507, 749, 1051
HgaI GACGC 2 cut(s) 375, 499
Hin1I GRCGYC 2 cut(s) 237, 510
Hin1II CATG 3 cut(s) 106, 199, 841
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 6 cut(s) 159, 278, 322, 555, 659, 1071
HpaII CCGG 8 cut(s) 114, 266, 286, 414, 483, 507, 749, 1051
HphI GGTGA 8 cut(s) 28, 88, 166, 283, 485, 541, 616, 1033
Hpy166II GTNNAC 6 cut(s) 220, 241, 397, 442, 616, 718
Hpy188I TCNGA 5 cut(s) 12, 327, 550, 905, 1039
Hpy188III TCNNGA 2 cut(s) 19, 286
Hpy8I GTNNAC 6 cut(s) 220, 241, 397, 442, 616, 718
Hpy99I CGWCG 7 cut(s) 12, 158, 188, 239, 391, 515, 518
HpyAV CCTTC 5 cut(s) 74, 301, 925, 1002, 1034
HpyCH4III ACNGT 2 cut(s) 122, 604
HpyCH4IV ACGT 4 cut(s) 237, 354, 438, 1027
HpyCH4V TGCA 4 cut(s) 208, 616, 666, 733
HpyF10VI GCNNNNNNNGC 9 cut(s) 209, 262, 309, 342, 566, 806, 818, 866, 1106
HpyF3I CTNAG 2 cut(s) 362, 1036
HpySE526I ACGT 4 cut(s) 237, 354, 438, 1027
Hsp92I GRCGYC 2 cut(s) 237, 510
Hsp92II CATG 3 cut(s) 106, 199, 841
KflI GGGWCCC 1 cut(s) 259
Kpn2I TCCGGA 1 cut(s) 285
Ksp22I TGATCA 2 cut(s) 531, 862
KspI CCGCGG 1 cut(s) 131
LmnI GCTCC 4 cut(s) 217, 550, 751, 922
Lsp1109I GCAGC 2 cut(s) 821, 1089
LweI GCATC 3 cut(s) 195, 988, 1087
MaeI CTAG 2 cut(s) 392, 794
MaeII ACGT 4 cut(s) 237, 354, 438, 1027
MaeIII GTNAC 5 cut(s) 94, 136, 172, 604, 769
MbiI CCGCTC 1 cut(s) 169
MboII GAAGA 2 cut(s) 331, 610
MflI RGATCY 1 cut(s) 1060
MhlI GDGCHC 6 cut(s) 127, 347, 375, 489, 495, 618
MluCI AATT 2 cut(s) 453, 755
MluI ACGCGT 1 cut(s) 384
MlyI GAGTC 4 cut(s) 287, 316, 668, 1080
MmeI TCCRAC 1 cut(s) 883
MroI TCCGGA 1 cut(s) 285
MseI TTAA 1 cut(s) 696
MslI CAYNNNNRTG 1 cut(s) 101
MspA1I CMGCKG 5 cut(s) 130, 361, 611, 812, 1019
MspI CCGG 8 cut(s) 114, 266, 286, 414, 483, 507, 749, 1051
MspR9I CCNGG 7 cut(s) 114, 150, 414, 484, 507, 843, 1115
MvaI CCWGG 3 cut(s) 150, 843, 1115
MvnI CGCG 2 cut(s) 130, 386
MwoI GCNNNNNNNGC 9 cut(s) 209, 262, 309, 342, 566, 806, 818, 866, 1106
NciI CCSGG 4 cut(s) 114, 414, 484, 507
NlaIII CATG 3 cut(s) 106, 199, 841
NlaIV GGNNCC 4 cut(s) 14, 124, 260, 261
NmuCI GTSAC 4 cut(s) 94, 172, 604, 769
NspI RCATGY 1 cut(s) 106
NspV TTCGAA 1 cut(s) 743
PaeR7I CTCGAG 1 cut(s) 488
PcsI WCGNNNNNNNCGW 4 cut(s) 168, 231, 243, 507
PfeI GAWTC 2 cut(s) 159, 555
PflFI GACNNNGTC 1 cut(s) 446
PkrI GCNGC 5 cut(s) 132, 314, 335, 811, 1079
PleI GAGTC 4 cut(s) 286, 316, 667, 1079
PpsI GAGTC 4 cut(s) 286, 316, 667, 1079
PpuMI RGGWCCY 1 cut(s) 259
Psp124BI GAGCTC 2 cut(s) 347, 375
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 3 cut(s) 148, 841, 1113
PspEI GGTNACC 1 cut(s) 604
PspGI CCWGG 3 cut(s) 148, 841, 1113
PspN4I GGNNCC 4 cut(s) 14, 124, 260, 261
PspPI GGNCC 5 cut(s) 4, 12, 132, 164, 259
PspPPI RGGWCCY 1 cut(s) 259
PspXI VCTCGAGB 1 cut(s) 488
PstI CTGCAG 1 cut(s) 668
PsuI RGATCY 1 cut(s) 1060
PsyI GACNNNGTC 1 cut(s) 446
PvuII CAGCTG 2 cut(s) 361, 812
RsaI GTAC 5 cut(s) 221, 383, 566, 686, 1049
RsaNI GTAC 5 cut(s) 220, 382, 565, 685, 1048
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 2 cut(s) 347, 375
SacII CCGCGG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 696
SatI GCNGC 5 cut(s) 131, 313, 334, 810, 1078
Sau96I GGNCC 5 cut(s) 4, 12, 132, 164, 259
SchI GAGTC 4 cut(s) 287, 316, 668, 1080
ScrFI CCNGG 7 cut(s) 114, 150, 414, 484, 507, 843, 1115
SduI GDGCHC 6 cut(s) 127, 347, 375, 489, 495, 618
SfaNI GCATC 3 cut(s) 195, 988, 1087
SfcI CTRYAG 1 cut(s) 664
Sfr274I CTCGAG 1 cut(s) 488
Sfr303I CCGCGG 1 cut(s) 131
SfuI TTCGAA 1 cut(s) 743
SgrBI CCGCGG 1 cut(s) 131
SinI GGWCC 2 cut(s) 12, 259
SlaI CTCGAG 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 488, 524
SmoI CTYRAG 2 cut(s) 488, 524
Sse9I AATT 2 cut(s) 453, 755
SspMI CTAG 2 cut(s) 392, 794
SstI GAGCTC 2 cut(s) 347, 375
StyD4I CCNGG 7 cut(s) 112, 148, 412, 482, 505, 841, 1113
TaaI ACNGT 2 cut(s) 122, 604
TaiI ACGT 4 cut(s) 240, 357, 441, 1030
TasI AATT 2 cut(s) 453, 755
TatI WGTACW 1 cut(s) 219
TauI GCSGC 3 cut(s) 133, 315, 336
TfiI GAWTC 2 cut(s) 159, 555
Tru1I TTAA 1 cut(s) 696
Tru9I TTAA 1 cut(s) 696
TscAI CASTG 2 cut(s) 835, 948
TseFI GTSAC 4 cut(s) 94, 172, 604, 769
TseI GCWGC 2 cut(s) 809, 1077
Tsp45I GTSAC 4 cut(s) 94, 172, 604, 769
TspDTI ATGAA 3 cut(s) 647, 924, 984
TspGWI ACGGA 2 cut(s) 82, 171
TspRI CASTG 2 cut(s) 835, 948
Tth111I GACNNNGTC 1 cut(s) 446
VneI GTGCAC 1 cut(s) 614
VpaK11BI GGWCC 2 cut(s) 12, 259
XceI RCATGY 1 cut(s) 106
XhoI CTCGAG 1 cut(s) 488
XspI CTAG 2 cut(s) 392, 794
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.