Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005225

Physical Location & Seq

Genomic Coordinates Reverse (-)

12855054 .. 12856715

Gene Structure 1662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G128300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGAATTGTATTGATTTTGAGTCTTGTCGTGAGGTGGCCACAAAGTATCCTGGGATCAACTATAAGGAAATAATTGTGGGCAACTGCTGCATGCAACTTGTTTCGAAGCCTGATCAATTTGATGTCATGGTGAATAAAGGGCAACGGAGTTGGTCATCTACAGACGGTGGCAGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0009060 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017144 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0048046 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

60

Amino Acids

6.71

Weight (kDa)

7.63

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17130 AT2G17130 AT4G35260
fragaria_vesca	FvH4_2g16520 FvH4_2g16520 FvH4_2g16520 FvH4_2g16520 FvH4_2g16520 FvH4_2g16520
malus_domestica	MD05G1133600.v1.1 MD10G1138600.v1.1
prunus_persica	Prupe.3G128300_v2.0.a1 Prupe.8G177400_v2.0.a1 Prupe.8G177400_v2.0.a1 Prupe.8G177400_v2.0.a1
pyrus_communis	pycom07g23620
rosa_chinensis	RchiOBHm_Chr6g0280541
rosa_laevigata	RLG00000013056
rosa_multiflora	Rmu_co8141332.1_g000001 Rmu_sc0005585.1_g000001 Rmu_sc0015818.1_g000005
rosa_roxburghii	Rroxscaffold_7G00188000
rosa_rugosa	Rorug06G0131900 Rorug06G0132000
rosa_samantha	Rh6AG244400 Rh6BG246800 Rh6CG248200 Rh6DG239600
rosa_wichuraiana	Rw6G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	36
AjnI	CCWGG	1 cut(s)	49
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	142
AsuII	TTCGAA	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	51
BciVI	GTATCC	1 cut(s)	57
BclI	TGATCA	1 cut(s)	112
BfmI	CTRYAG	1 cut(s)	159
BfuI	GTATCC	1 cut(s)	57
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	74
BshFI	GGCC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	38
Bsp119I	TTCGAA	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	54, 112
BspANI	GGCC	1 cut(s)	38
BspPI	GGATC	1 cut(s)	62
BspT104I	TTCGAA	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	2 cut(s)	54, 112
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	92, 173
BstKTI	GATC	2 cut(s)	57, 115
BstMBI	GATC	2 cut(s)	54, 112
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	92, 173
CviAII	CATG	2 cut(s)	91, 127
CviJI	RGCY	2 cut(s)	38, 109
CviKI_1	RGCY	2 cut(s)	38, 109
DpnI	GATC	2 cut(s)	56, 114
DpnII	GATC	2 cut(s)	54, 112
EaeI	YGGCCR	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	49
FaeI	CATG	2 cut(s)	94, 130
FaiI	YATR	3 cut(s)	63, 92, 128
FatI	CATG	2 cut(s)	90, 126
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	94, 130
HinfI	GANTC	1 cut(s)	20
HphI	GGTGA	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	2 cut(s)	90, 94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	94, 130
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	54, 112
LpnPI	CCDG	4 cut(s)	36, 63, 123, 157
Lsp1109I	GCAGC	1 cut(s)	74
MalI	GATC	2 cut(s)	56, 114
MboI	GATC	2 cut(s)	54, 112
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	3 cut(s)	4, 72, 116
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	1 cut(s)	25
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
Msp20I	TGGCCA	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	87
NdeII	GATC	2 cut(s)	54, 112
NlaIII	CATG	2 cut(s)	94, 130
NspI	RCATGY	1 cut(s)	94
NspV	TTCGAA	1 cut(s)	104
PaeI	GCATGC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	2 cut(s)	54, 112
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	159
SfuI	TTCGAA	1 cut(s)	104
SgeI	CNNG	8 cut(s)	36, 41, 62, 63, 103, 110, 122, 139
SphI	GCATGC	1 cut(s)	94
Sse9I	AATT	3 cut(s)	4, 72, 116
StyD4I	CCNGG	1 cut(s)	49
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	104
TasI	AATT	3 cut(s)	4, 72, 116
TseI	GCWGC	1 cut(s)	87
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	160
XceI	RCATGY	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.