Prupe.8G177400_v2.0.a1

Isocitrate dehydrogenase NAD regulatory subunit 1

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
17902001 .. 17905491
3491 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G177400.3

Sequence Viewer

Length: 1122 bp
ATGGCTCGGCGGACCCTCCCGATCCTCAAAAACCTCACCCACCGCCCCACGCCCGGACCCTTCCTTCCCAAACCCGACCCGAACACAAGATCCGTCACCTACATGCCCCGACCAGGCGACGGAGCCCCGCGGCCCGTCACCCTGATCCCCGGTGACGGCATAGGCCCGCTCGTCACCAACGCCGTCGAGCAAGTCATGGAGGCGATGCACGCTCCGGTGTACTTTGAGCGGTACGACGTCCACGGCGATCTGAAGCGGGTGCCGACGGAGGTGATCGAGTCGATCCGGAAGAACAAGGTCTGCCTGAAAGGCGGCTTAAAGACTCCAGTCGGCGGGGGTGTGAGCTCGCTCAACGTCCAGCTGAGGAAAGAGCTCGACTTGTACGCTTCCTTGGTCAACTGCTTCAACCTCCCCGGTCTCCCTACCCGCCACGAGAACGTGGACATTGTCGTAATTAGAGAGAACACCGAGGGCGAATACTCGGGGCTCGAGCACGAGGTCGTCCCCGGCGTCGTTGAGAGCCTCAAGGTGATCACGAAGTTTTGCTCAGAGCGAATTGCCAAGTATGCGTTTGAGTATGCGTATCTGAACAACAGAAAGAAGGTGACTGCTGTGCACAAAGCCAACATTATGAAGCTGGCAGATGGGTTGTTCTTAGAGTCTTGTAGAGAGATTGCTACCAAGTACCCAAGTATCAAGTACAATGAGATTATTGTGGACAATTGCTGCATGCAACTTGTTTCGAAGCCCGAGCAATTTGACGTTATGGTCACTCCTAATCTTTATGGAAACCTAGTGGCAAATACGGCAGCTGGTATTGCTGGAGGCACTGGGGTCATGCCAGGAGGAAATGTGGGTGCTGATCATGCTGTTTTTGAGCAAGGTGCTTCAGCAGGAAATGTCGGAAACGAAAAATTATGGGAGCAAAAGAAGGCCAACCCAGTGGCTTTGCTACTGTCATCAGCTATGATGTTGAGGCATCTCCAGTTTCCTTCATTTGCTGATCGACTTGAAACAGCCGTGAAACGTGTGATCTCAGAAGGCAAGTACCGGACGAAAGATCTCGGCGGAGTCAGCACCACTCAAGAGGTTGTTGATGCGGTTATTGCTAATCTGGACTGA

Protein Analysis

374

Amino Acids

40.72

Weight (kDa)

8.4

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 767
AatII GACGTC 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 259
AccBSI CCGCTC 2 cut(s) 169, 229
AccII CGCG 1 cut(s) 130
AccIII TCCGGA 1 cut(s) 285
AclWI GGATC 4 cut(s) 16, 84, 139, 277
AcuI CTGAAG 2 cut(s) 272, 873
AcyI GRCGYC 2 cut(s) 237, 510
AfaI GTAC 6 cut(s) 221, 233, 383, 686, 701, 1049
AfiI CCNNNNNNNGG 5 cut(s) 53, 113, 119, 155, 332
AflIII ACRYGT 1 cut(s) 1027
AgsI TTSAA 2 cut(s) 406, 1013
AjnI CCWGG 2 cut(s) 112, 841
AloI GAACNNNNNNTCC 2 cut(s) 74, 106
AluBI AGCT 6 cut(s) 345, 361, 373, 637, 812, 965
AluI AGCT 6 cut(s) 345, 361, 373, 637, 812, 965
Alw21I GWGCWC 4 cut(s) 347, 375, 495, 618
Alw26I GTCTC 1 cut(s) 422
Alw44I GTGCAC 1 cut(s) 614
AlwI GGATC 4 cut(s) 16, 84, 139, 277
Ama87I CYCGRG 3 cut(s) 481, 488, 749
Aor13HI TCCGGA 1 cut(s) 285
AoxI GGCC 3 cut(s) 131, 163, 933
ApaLI GTGCAC 1 cut(s) 614
ApeKI GCWGC 2 cut(s) 726, 809
AspS9I GGNCC 4 cut(s) 12, 56, 132, 164
AsuC2I CCSGG 4 cut(s) 54, 150, 414, 507
AsuHPI GGTGA 8 cut(s) 28, 88, 130, 164, 166, 283, 541, 616
AsuII TTCGAA 1 cut(s) 743
AvaI CYCGRG 3 cut(s) 481, 488, 749
AvaII GGWCC 2 cut(s) 12, 56
BaeGI GKGCMC 1 cut(s) 618
BaeI ACNNNNGTAYC 2 cut(s) 676, 709
BanI GGYRCC 1 cut(s) 259
BanII GRGCYC 4 cut(s) 127, 347, 375, 489
BauI CACGAG 2 cut(s) 431, 494
Bbv12I GWGCWC 4 cut(s) 347, 375, 495, 618
BbvCI CCTCAGC 1 cut(s) 362
BbvI GCAGC 2 cut(s) 713, 821
BccI CCATC 1 cut(s) 638
BceAI ACGGC 5 cut(s) 167, 172, 259, 822, 1004
BciT130I CCWGG 2 cut(s) 114, 843
BclI TGATCA 2 cut(s) 531, 862
BcnI CCSGG 4 cut(s) 54, 150, 414, 507
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 1 cut(s) 794
BglI GCCNNNNNGGC 1 cut(s) 309
BglII AGATCT 1 cut(s) 1060
BisI GCNGC 4 cut(s) 131, 313, 727, 810
BlsI GCNGC 4 cut(s) 132, 314, 728, 811
Bme1390I CCNGG 6 cut(s) 54, 114, 150, 414, 507, 843
Bme18I GGWCC 2 cut(s) 12, 56
BmeT110I CYCGRG 3 cut(s) 481, 488, 749
BmgT120I GGNCC 4 cut(s) 12, 56, 132, 164
BmiI GGNNCC 4 cut(s) 14, 58, 124, 261
BmrFI CCNGG 6 cut(s) 54, 114, 150, 414, 507, 843
BmrI ACTGGG 2 cut(s) 840, 935
BmsI GCATC 3 cut(s) 195, 988, 1087
BmuI ACTGGG 2 cut(s) 840, 935
BoxI GACNNNNGTC 1 cut(s) 326
BpmI CTGGAG 3 cut(s) 309, 843, 968
Bpu10I CCTNAGC 1 cut(s) 362
Bpu14I TTCGAA 1 cut(s) 743
BpuEI CTTGAG 2 cut(s) 509, 1068
BpuMI CCSGG 4 cut(s) 54, 150, 414, 507
BsaHI GRCGYC 2 cut(s) 237, 510
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 7 cut(s) 128, 148, 241, 390, 412, 468, 505
BsaWI WCCGGW 3 cut(s) 214, 285, 1050
BsaXI ACNNNNNCTCC 2 cut(s) 837, 867
Bsc4I CCNNNNNNNGG 5 cut(s) 53, 113, 119, 155, 332
Bse1I ACTGG 4 cut(s) 326, 835, 941, 985
BseAI TCCGGA 1 cut(s) 285
BseBI CCWGG 2 cut(s) 114, 843
BseDI CCNNGG 7 cut(s) 128, 148, 241, 390, 412, 468, 505
BseLI CCNNNNNNNGG 5 cut(s) 53, 113, 119, 155, 332
BseMII CTCAG 3 cut(s) 353, 561, 1050
BseNI ACTGG 4 cut(s) 326, 835, 941, 985
BseSI GKGCMC 1 cut(s) 618
BseXI GCAGC 2 cut(s) 713, 821
Bsh1236I CGCG 1 cut(s) 130
BshFI GGCC 3 cut(s) 133, 165, 935
BshNI GGYRCC 1 cut(s) 259
BsiHKAI GWGCWC 4 cut(s) 347, 375, 495, 618
BsiHKCI CYCGRG 3 cut(s) 481, 488, 749
BsiSI CCGG 7 cut(s) 54, 150, 215, 286, 414, 507, 1051
BslFI GGGAC 1 cut(s) 488
BslI CCNNNNNNNGG 5 cut(s) 53, 113, 119, 155, 332
BsmAI GTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 488
BsnI GGCC 3 cut(s) 133, 165, 935
Bso31I GGTCTC 1 cut(s) 422
BsoBI CYCGRG 3 cut(s) 481, 488, 749
Bsp119I TTCGAA 1 cut(s) 743
Bsp1286I GDGCHC 6 cut(s) 127, 347, 375, 489, 495, 618
Bsp13I TCCGGA 1 cut(s) 285
BspANI GGCC 3 cut(s) 133, 165, 935
BspCNI CTCAG 3 cut(s) 354, 560, 1049
BspEI TCCGGA 1 cut(s) 285
BspFNI CGCG 1 cut(s) 130
BspLI GGNNCC 4 cut(s) 14, 58, 124, 261
BspPI GGATC 4 cut(s) 16, 84, 139, 277
BspT104I TTCGAA 1 cut(s) 743
BspT107I GGYRCC 1 cut(s) 259
BspTNI GGTCTC 1 cut(s) 422
BsrBI CCGCTC 2 cut(s) 169, 229
BsrI ACTGG 4 cut(s) 326, 835, 941, 985
BssECI CCNNGG 7 cut(s) 128, 148, 241, 390, 412, 468, 505
BssNI GRCGYC 2 cut(s) 237, 510
BssSI CACGAG 2 cut(s) 431, 494
BssT1I CCWWGG 1 cut(s) 390
Bst2BI CACGAG 2 cut(s) 431, 494
Bst2UI CCWGG 2 cut(s) 114, 843
Bst4CI ACNGT 1 cut(s) 957
BstACI GRCGYC 2 cut(s) 237, 510
BstBI TTCGAA 1 cut(s) 743
BstC8I GCNNGC 5 cut(s) 167, 210, 347, 639, 731
BstDEI CTNAG 4 cut(s) 362, 547, 655, 1036
BstDSI CCRYGG 2 cut(s) 128, 241
BstFNI CGCG 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 422
BstMWI GCNNNNNNNGC 8 cut(s) 209, 309, 566, 806, 818, 866, 1074, 1106
BstNI CCWGG 2 cut(s) 114, 843
BstNSI RCATGY 2 cut(s) 106, 733
BstPAI GACNNNNGTC 1 cut(s) 326
BstSCI CCNGG 6 cut(s) 52, 112, 148, 412, 505, 841
BstSLI GKGCMC 1 cut(s) 618
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 713, 821
BstX2I RGATCY 2 cut(s) 89, 1060
BstXI CCANNNNNNTGG 1 cut(s) 943
BstYI RGATCY 2 cut(s) 89, 1060
BsuRI GGCC 3 cut(s) 133, 165, 935
BtgI CCRYGG 2 cut(s) 128, 241
BtgZI GCGATG 1 cut(s) 218
BtsIMutI CAGTG 2 cut(s) 828, 948
Cac8I GCNNGC 5 cut(s) 167, 210, 347, 639, 731
Cfr13I GGNCC 4 cut(s) 12, 56, 132, 164
Cfr42I CCGCGG 1 cut(s) 131
CseI GACGC 1 cut(s) 499
Csp6I GTAC 6 cut(s) 220, 232, 382, 685, 700, 1048
CviAII CATG 5 cut(s) 103, 196, 730, 838, 866
CviQI GTAC 6 cut(s) 220, 232, 382, 685, 700, 1048
DdeI CTNAG 4 cut(s) 362, 547, 655, 1036
DrdI GACNNNNNNGTC 1 cut(s) 767
DseDI GACNNNNNNGTC 1 cut(s) 767
EciI GGCGGA 2 cut(s) 25, 1083
Ecl136II GAGCTC 2 cut(s) 345, 373
Eco130I CCWWGG 1 cut(s) 390
Eco24I GRGCYC 4 cut(s) 127, 347, 375, 489
Eco31I GGTCTC 1 cut(s) 422
Eco47I GGWCC 2 cut(s) 12, 56
Eco53kI GAGCTC 2 cut(s) 345, 373
Eco57I CTGAAG 2 cut(s) 272, 873
Eco88I CYCGRG 3 cut(s) 481, 488, 749
EcoICRI GAGCTC 2 cut(s) 345, 373
EcoRII CCWGG 2 cut(s) 112, 841
EcoT14I CCWWGG 1 cut(s) 390
EcoT38I GRGCYC 4 cut(s) 127, 347, 375, 489
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 5 cut(s) 106, 199, 733, 841, 869
FaqI GGGAC 1 cut(s) 488
FatI CATG 5 cut(s) 102, 195, 729, 837, 865
FauI CCCGC 5 cut(s) 135, 174, 249, 326, 434
FbaI TGATCA 2 cut(s) 531, 862
Fnu4HI GCNGC 4 cut(s) 131, 313, 727, 810
FriOI GRGCYC 4 cut(s) 127, 347, 375, 489
Fsp4HI GCNGC 4 cut(s) 131, 313, 727, 810
FspBI CTAG 1 cut(s) 794
GluI GCNGC 4 cut(s) 131, 313, 727, 810
GsuI CTGGAG 3 cut(s) 309, 843, 968
HaeIII GGCC 3 cut(s) 133, 165, 935
HapII CCGG 7 cut(s) 54, 150, 215, 286, 414, 507, 1051
HgaI GACGC 1 cut(s) 499
Hin1I GRCGYC 2 cut(s) 237, 510
Hin1II CATG 5 cut(s) 106, 199, 733, 841, 869
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 4 cut(s) 278, 322, 659, 1071
HpaII CCGG 7 cut(s) 54, 150, 215, 286, 414, 507, 1051
HphI GGTGA 8 cut(s) 28, 88, 130, 164, 166, 283, 541, 616
Hpy166II GTNNAC 6 cut(s) 220, 241, 397, 442, 616, 718
Hpy188I TCNGA 5 cut(s) 252, 550, 588, 905, 1039
Hpy188III TCNNGA 5 cut(s) 19, 286, 535, 1085, 1115
Hpy8I GTNNAC 6 cut(s) 220, 241, 397, 442, 616, 718
Hpy99I CGWCG 5 cut(s) 122, 188, 239, 268, 515
HpyAV CCTTC 6 cut(s) 70, 74, 595, 925, 1002, 1034
HpyCH4III ACNGT 1 cut(s) 957
HpyCH4IV ACGT 5 cut(s) 237, 354, 438, 762, 1027
HpyCH4V TGCA 4 cut(s) 208, 616, 729, 733
HpyF10VI GCNNNNNNNGC 8 cut(s) 209, 309, 566, 806, 818, 866, 1074, 1106
HpyF3I CTNAG 4 cut(s) 362, 547, 655, 1036
HpySE526I ACGT 5 cut(s) 237, 354, 438, 762, 1027
Hsp92I GRCGYC 2 cut(s) 237, 510
Hsp92II CATG 5 cut(s) 106, 199, 733, 841, 869
Kpn2I TCCGGA 1 cut(s) 285
Ksp22I TGATCA 2 cut(s) 531, 862
KspI CCGCGG 1 cut(s) 131
LmnI GCTCC 3 cut(s) 122, 217, 922
Lsp1109I GCAGC 2 cut(s) 713, 821
LweI GCATC 3 cut(s) 195, 988, 1087
MaeI CTAG 1 cut(s) 794
MaeII ACGT 5 cut(s) 237, 354, 438, 762, 1027
MaeIII GTNAC 6 cut(s) 94, 136, 152, 172, 604, 769
MbiI CCGCTC 2 cut(s) 169, 229
MboII GAAGA 1 cut(s) 301
MfeI CAATTG 1 cut(s) 721
MflI RGATCY 2 cut(s) 89, 1060
MhlI GDGCHC 6 cut(s) 127, 347, 375, 489, 495, 618
MluCI AATT 5 cut(s) 453, 555, 721, 755, 914
MlyI GAGTC 4 cut(s) 287, 316, 668, 1080
MmeI TCCRAC 1 cut(s) 883
MroI TCCGGA 1 cut(s) 285
MseI TTAA 1 cut(s) 317
MslI CAYNNNNRTG 1 cut(s) 101
MspA1I CMGCKG 3 cut(s) 130, 361, 812
MspI CCGG 7 cut(s) 54, 150, 215, 286, 414, 507, 1051
MspR9I CCNGG 6 cut(s) 54, 114, 150, 414, 507, 843
MunI CAATTG 1 cut(s) 721
MvaI CCWGG 2 cut(s) 114, 843
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 8 cut(s) 209, 309, 566, 806, 818, 866, 1074, 1106
NciI CCSGG 4 cut(s) 54, 150, 414, 507
NlaIII CATG 5 cut(s) 106, 199, 733, 841, 869
NlaIV GGNNCC 4 cut(s) 14, 58, 124, 261
NmeAIII GCCGAG 1 cut(s) 1044
NmuCI GTSAC 6 cut(s) 94, 136, 152, 172, 604, 769
NspI RCATGY 2 cut(s) 106, 733
NspV TTCGAA 1 cut(s) 743
PaeI GCATGC 1 cut(s) 733
PaeR7I CTCGAG 1 cut(s) 488
PcsI WCGNNNNNNNCGW 2 cut(s) 243, 507
PflFI GACNNNGTC 1 cut(s) 446
PkrI GCNGC 4 cut(s) 132, 314, 728, 811
PleI GAGTC 4 cut(s) 286, 316, 667, 1079
PpsI GAGTC 4 cut(s) 286, 316, 667, 1079
PshAI GACNNNNGTC 1 cut(s) 326
Psp124BI GAGCTC 2 cut(s) 347, 375
Psp6I CCWGG 2 cut(s) 112, 841
PspGI CCWGG 2 cut(s) 112, 841
PspN4I GGNNCC 4 cut(s) 14, 58, 124, 261
PspPI GGNCC 4 cut(s) 12, 56, 132, 164
PspXI VCTCGAGB 1 cut(s) 488
PsuI RGATCY 2 cut(s) 89, 1060
PsyI GACNNNGTC 1 cut(s) 446
PvuII CAGCTG 2 cut(s) 361, 812
RsaI GTAC 6 cut(s) 221, 233, 383, 686, 701, 1049
RsaNI GTAC 6 cut(s) 220, 232, 382, 685, 700, 1048
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 2 cut(s) 347, 375
SacII CCGCGG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 4 cut(s) 131, 313, 727, 810
Sau96I GGNCC 4 cut(s) 12, 56, 132, 164
SchI GAGTC 4 cut(s) 287, 316, 668, 1080
ScrFI CCNGG 6 cut(s) 54, 114, 150, 414, 507, 843
SduI GDGCHC 6 cut(s) 127, 347, 375, 489, 495, 618
SfaNI GCATC 3 cut(s) 195, 988, 1087
Sfr274I CTCGAG 1 cut(s) 488
Sfr303I CCGCGG 1 cut(s) 131
SfuI TTCGAA 1 cut(s) 743
SgrBI CCGCGG 1 cut(s) 131
SinI GGWCC 2 cut(s) 12, 56
SlaI CTCGAG 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 3 cut(s) 488, 524, 1083
SmoI CTYRAG 3 cut(s) 488, 524, 1083
SphI GCATGC 1 cut(s) 733
Sse9I AATT 5 cut(s) 453, 555, 721, 755, 914
SspMI CTAG 1 cut(s) 794
SstI GAGCTC 2 cut(s) 347, 375
StyD4I CCNGG 6 cut(s) 52, 112, 148, 412, 505, 841
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 1 cut(s) 957
TaiI ACGT 5 cut(s) 240, 357, 441, 765, 1030
TaqI TCGA 7 cut(s) 186, 276, 281, 375, 489, 743, 1006
TasI AATT 5 cut(s) 453, 555, 721, 755, 914
TatI WGTACW 2 cut(s) 219, 699
TauI GCSGC 2 cut(s) 133, 315
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 2 cut(s) 835, 948
TseFI GTSAC 6 cut(s) 94, 136, 152, 172, 604, 769
TseI GCWGC 2 cut(s) 726, 809
Tsp45I GTSAC 6 cut(s) 94, 136, 152, 172, 604, 769
TspDTI ATGAA 2 cut(s) 647, 984
TspGWI ACGGA 3 cut(s) 82, 135, 281
TspRI CASTG 2 cut(s) 835, 948
Tth111I GACNNNGTC 1 cut(s) 446
VneI GTGCAC 1 cut(s) 614
VpaK11BI GGWCC 2 cut(s) 12, 56
XceI RCATGY 2 cut(s) 106, 733
XhoI CTCGAG 1 cut(s) 488
XspI CTAG 1 cut(s) 794
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.