Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8141332.1

Orthogroup ID

OG0005225

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 331

Gene Structure 331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8141332.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 236 bp

aacgcatagcgaagtatgcgtttgagtatgcatacttgaataacagaaagaaagtgactgccgtgcacaaagccaacatcatgaagcttgcggatggtttgttcttggagtcttgccgggaggttgcgacaaagtatcccagtatcaagtataatgagattatcgtggacaattgctgtatgcaacttgtttcaaagcctgaacagtttgatgtgatggtatgcgagcgcaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

77

Amino Acids

8.97

Weight (kDa)

8.73

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17130 AT2G17130 AT4G35260
fragaria_vesca	FvH4_2g16520 FvH4_2g16520 FvH4_2g16520 FvH4_2g16520 FvH4_2g16520 FvH4_2g16520
malus_domestica	MD05G1133600.v1.1 MD10G1138600.v1.1
prunus_persica	Prupe.3G128300_v2.0.a1 Prupe.8G177400_v2.0.a1 Prupe.8G177400_v2.0.a1 Prupe.8G177400_v2.0.a1
pyrus_communis	pycom07g23620
rosa_chinensis	RchiOBHm_Chr6g0280541
rosa_laevigata	RLG00000013056
rosa_multiflora	Rmu_co8141332.1_g000001 Rmu_sc0005585.1_g000001 Rmu_sc0015818.1_g000005
rosa_roxburghii	Rroxscaffold_7G00188000
rosa_rugosa	Rorug06G0131900 Rorug06G0132000
rosa_samantha	Rh6AG244400 Rh6BG246800 Rh6CG248200 Rh6DG239600
rosa_wichuraiana	Rw6G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	39, 194
AloI	GAACNNNNNNTCC	2 cut(s)	85, 117
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
Alw21I	GWGCWC	1 cut(s)	68
Alw44I	GTGCAC	1 cut(s)	64
ApaLI	GTGCAC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	68
BccI	CCATC	2 cut(s)	88, 210
BceAI	ACGGC	1 cut(s)	46
BciVI	GTATCC	1 cut(s)	146
BcnI	CCSGG	1 cut(s)	118
BfuI	GTATCC	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	134
BmuI	ACTGGG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	140
BseGI	GGATG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	68
BspACI	CCGC	1 cut(s)	91
BspHI	TCATGA	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	206
BstC8I	GCNNGC	2 cut(s)	89, 226
BstF5I	GGATG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	116
BstSLI	GKGCMC	1 cut(s)	68
BsuI	GTATCC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	89, 226
CciI	TCATGA	1 cut(s)	80
CfoI	GCGC	1 cut(s)	230
CviAII	CATG	1 cut(s)	81
CviJI	RGCY	3 cut(s)	73, 87, 198
CviKI_1	RGCY	3 cut(s)	73, 87, 198
EcoT22I	ATGCAT	1 cut(s)	33
FaeI	CATG	1 cut(s)	84
FaiI	YATR	8 cut(s)	7, 17, 29, 33, 82, 152, 181, 222
FatI	CATG	1 cut(s)	80
FokI	GGATG	1 cut(s)	106
GlaI	GCGC	1 cut(s)	229
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	1 cut(s)	84
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	117
Hpy166II	GTNNAC	2 cut(s)	66, 168
Hpy188III	TCNNGA	1 cut(s)	81
Hpy8I	GTNNAC	2 cut(s)	66, 168
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	3 cut(s)	31, 66, 183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	84
HspAI	GCGC	1 cut(s)	228
LpnPI	CCDG	3 cut(s)	130, 153, 212
MaeIII	GTNAC	1 cut(s)	54
MfeI	CAATTG	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	2 cut(s)	171, 231
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	1 cut(s)	114
Mph1103I	ATGCAT	1 cut(s)	33
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	118
MunI	CAATTG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	16
NciI	CCSGG	1 cut(s)	118
NlaIII	CATG	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	54
NsiI	ATGCAT	1 cut(s)	33
PagI	TCATGA	1 cut(s)	80
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	2 cut(s)	89, 125
Sse9I	AATT	2 cut(s)	171, 231
SsiI	CCGC	1 cut(s)	91
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	206
TasI	AATT	2 cut(s)	171, 231
TseFI	GTSAC	1 cut(s)	54
Tsp45I	GTSAC	1 cut(s)	54
TspDTI	ATGAA	1 cut(s)	97
VneI	GTGCAC	1 cut(s)	64
Zsp2I	ATGCAT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.